Wall clock time and date at job start Tue Mar 31 2020 09:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46779 * 2 1 4 4 C 1.52997 * 109.46784 * 119.99717 * 2 1 3 5 5 C 1.50694 * 109.47460 * 300.00248 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52995 * 109.47410 * 240.00272 * 2 1 3 14 14 N 1.46896 * 109.47208 * 59.99631 * 13 2 1 15 15 C 1.46907 * 110.99733 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46848 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.34096 * 304.67198 * 16 15 14 18 18 O 1.42718 * 109.33997 * 64.19135 * 16 15 14 19 19 C 1.43211 * 113.14678 * 171.99918 * 18 16 15 20 20 C 1.52970 * 108.47929 * 289.33971 * 19 18 16 21 21 C 1.50748 * 109.76344 * 49.22086 * 20 19 18 22 22 C 1.38593 * 118.76478 * 163.21152 * 21 20 19 23 23 C 1.38065 * 120.27475 * 179.53147 * 22 21 20 24 24 C 1.38260 * 119.86442 * 0.02562 * 23 22 21 25 25 C 1.38055 * 119.89637 * 0.09880 * 24 23 22 26 26 C 1.37910 * 121.34674 * 342.92337 * 21 20 19 27 27 H 1.08993 * 109.47049 * 299.99824 * 1 2 3 28 28 H 1.09001 * 109.46762 * 60.00206 * 1 2 3 29 29 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46630 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46852 * 299.99745 * 3 2 1 32 32 H 1.08998 * 109.46963 * 59.99562 * 3 2 1 33 33 H 1.09005 * 109.46800 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47382 * 60.00518 * 4 2 1 35 35 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47128 * 180.02562 * 13 2 1 37 37 H 1.09006 * 109.46661 * 299.99799 * 13 2 1 38 38 H 1.00896 * 110.99809 * 56.05270 * 14 13 2 39 39 H 1.08992 * 109.47248 * 300.00172 * 15 14 13 40 40 H 1.09001 * 109.47119 * 60.00189 * 15 14 13 41 41 H 1.08994 * 109.63425 * 169.64111 * 19 18 16 42 42 H 1.09000 * 109.62990 * 49.03770 * 19 18 16 43 43 H 1.08996 * 109.42506 * 289.13483 * 20 19 18 44 44 H 1.08997 * 109.37014 * 169.28111 * 20 19 18 45 45 H 1.08004 * 119.86256 * 359.52510 * 22 21 20 46 46 H 1.08004 * 120.06776 * 180.02562 * 23 22 21 47 47 H 1.08002 * 120.05547 * 180.02562 * 24 23 22 48 48 H 1.07994 * 119.84854 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8710 -0.4815 3.7320 8 7 2.6271 -1.5508 3.8527 9 14 1.2489 0.3994 5.2572 10 1 1.7437 -0.3006 6.4697 11 1 1.7439 1.7994 5.2567 12 1 -0.2361 0.3994 5.2576 13 6 2.0401 -0.7212 -1.2492 14 7 1.5505 -0.0287 -2.4486 15 6 2.0211 -0.6952 -3.6703 16 6 1.4926 0.0534 -4.8955 17 1 0.4066 0.1248 -4.8342 18 8 2.0488 1.3674 -4.9228 19 6 1.7538 2.0786 -6.1304 20 6 2.5496 1.4451 -7.2729 21 6 2.3616 -0.0505 -7.2571 22 6 2.6956 -0.7767 -8.3893 23 6 2.5450 -2.1490 -8.4056 24 6 2.0585 -2.8015 -7.2880 25 6 1.7231 -2.0786 -6.1607 26 6 1.8731 -0.7005 -6.1432 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 2.8621 -1.8818 4.7337 36 1 3.1302 -0.7215 -1.2489 37 1 1.6768 -1.7489 -1.2492 38 1 1.8199 0.9436 -2.4401 39 1 3.1109 -0.6954 -3.6872 40 1 1.6573 -1.7226 -3.6868 41 1 2.0413 3.1240 -6.0193 42 1 0.6873 2.0098 -6.3446 43 1 3.6073 1.6787 -7.1510 44 1 2.1974 1.8447 -8.2238 45 1 3.0752 -0.2669 -9.2626 46 1 2.8067 -2.7116 -9.2896 47 1 1.9398 -3.8750 -7.2973 48 1 1.3427 -2.5891 -5.2883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362907350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:31 Heat of formation + Delta-G solvation = -40.543384 kcal Electronic energy + Delta-G solvation = -24795.539329 eV Core-core repulsion = 21428.232230 eV Total energy + Delta-G solvation = -3367.307100 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61893 -37.93446 -37.38612 -34.80803 -33.02716 -32.32921 -31.63792 -29.69385 -27.52546 -26.67268 -26.25521 -24.88604 -24.05706 -23.42950 -22.17909 -21.28331 -20.27056 -17.87772 -17.37598 -16.53565 -16.29360 -16.14275 -15.68450 -15.03592 -14.77742 -14.66316 -14.30989 -13.97885 -13.78576 -13.67285 -13.16194 -13.08573 -12.89002 -12.54745 -12.24752 -12.19130 -11.95952 -11.85668 -11.83491 -11.51119 -11.01708 -10.90656 -10.85546 -10.77965 -10.74235 -10.42737 -10.19873 -10.08733 -9.80160 -9.61681 -9.03191 -8.96091 -8.85038 -8.75940 -8.27341 -8.02827 -5.92119 -3.91971 1.06732 1.11686 3.37678 3.42040 3.44398 3.44858 3.61220 4.23697 4.37942 4.51675 4.53829 4.69139 4.76729 4.84249 4.92588 5.08722 5.18176 5.21767 5.29387 5.34261 5.43115 5.43642 5.59426 5.66085 5.75172 5.77214 5.82353 5.86237 5.92734 6.06352 6.19400 6.26133 6.30764 6.34060 6.40847 6.58933 6.73009 6.73242 6.85977 6.89396 6.99008 7.27411 7.28493 7.32125 7.45688 7.74351 7.79388 7.91599 8.08528 8.53280 9.13258 9.70462 11.19607 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.002628 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.033317 B =10650.340370 C =11250.623546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.058 4.058 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.289 1.289 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.685 5.685 15 C 0.070 3.930 16 C 0.132 3.868 17 H 0.081 0.919 18 O -0.369 6.369 19 C 0.060 3.940 20 C -0.116 4.116 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.109 4.109 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.347 0.653 39 H 0.035 0.965 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 2.552 -26.311 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.215 1.215 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.317 5.317 15 C -0.060 4.060 16 C 0.074 3.926 17 H 0.099 0.901 18 O -0.287 6.287 19 C -0.017 4.017 20 C -0.153 4.153 21 C -0.074 4.074 22 C -0.139 4.139 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.126 4.126 26 C -0.110 4.110 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.167 0.833 39 H 0.053 0.947 40 H 0.103 0.897 41 H 0.117 0.883 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.139 0.861 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.481 2.193 -26.012 26.146 hybrid contribution 0.646 0.377 0.576 0.944 sum -0.835 2.570 -25.436 25.579 Atomic orbital electron populations 1.21597 0.95045 1.00497 1.00158 1.20619 0.95817 0.95049 0.94321 1.21769 0.99712 0.96727 1.00435 1.19121 0.95892 0.95172 0.90193 1.21210 1.30708 1.11884 0.90626 0.92341 1.25018 0.95443 0.95141 0.99031 1.69962 1.37311 1.23235 1.23337 0.86723 0.79184 0.79777 0.82701 1.21481 1.20367 1.20328 1.22109 0.96410 0.98012 0.89374 1.60584 1.63318 1.07118 1.00722 1.22002 0.97881 0.97584 0.88522 1.20998 0.97918 0.82152 0.91504 0.90107 1.88080 1.76491 1.26246 1.37918 1.22584 0.98517 0.96283 0.84268 1.21149 1.02292 0.91700 1.00154 1.19509 0.98960 0.95581 0.93358 1.21047 1.00883 0.94260 0.97704 1.21112 0.99700 0.94484 0.98460 1.21127 0.99550 0.99990 0.93357 1.21159 0.99679 0.93140 0.98625 1.20238 1.00322 0.94597 0.95827 0.92732 0.93878 0.94238 0.94136 0.94641 0.91796 0.96933 0.96708 0.93151 0.95859 0.91680 0.83295 0.94694 0.89726 0.88268 0.92641 0.89713 0.89869 0.86127 0.86073 0.85863 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.06 37.16 0.30 -1.99 16 2 C -0.06 -1.18 0.60 -154.50 -0.09 -1.27 16 3 C -0.13 -2.50 7.89 37.16 0.29 -2.20 16 4 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -14.03 7.65 -34.44 -0.26 -14.29 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 C 0.07 1.24 4.65 -3.83 -0.02 1.23 16 14 N -0.68 -10.50 5.71 -113.78 -0.65 -11.15 16 15 C 0.07 0.92 5.07 -3.82 -0.02 0.90 16 16 C 0.13 1.58 2.96 -27.90 -0.08 1.50 16 17 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 18 O -0.37 -4.56 9.92 -35.23 -0.35 -4.91 16 19 C 0.06 0.54 6.85 37.14 0.25 0.80 16 20 C -0.12 -0.95 6.00 -27.87 -0.17 -1.12 16 21 C -0.07 -0.75 5.78 -104.59 -0.60 -1.35 16 22 C -0.12 -1.07 9.67 -39.51 -0.38 -1.46 16 23 C -0.12 -1.02 10.05 -39.64 -0.40 -1.42 16 24 C -0.12 -1.11 10.05 -39.64 -0.40 -1.51 16 25 C -0.11 -1.11 9.08 -39.50 -0.36 -1.47 16 26 C -0.11 -1.21 5.47 -104.61 -0.57 -1.79 16 27 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 28 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.59 6.57 -51.93 -0.34 0.25 16 32 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.35 5.42 6.30 -39.29 -0.25 5.17 16 39 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.04 6.33 -51.93 -0.33 0.71 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.47 8.07 -51.93 -0.42 0.05 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 46 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.13 1.20 6.45 -52.49 -0.34 0.86 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -30.70 371.39 -10.52 -41.22 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -8.11 Total: 2.10 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.72 Total: -23.24 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.09 Total: -37.58 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.35 Total: -4.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.70 -10.52 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362907350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.673 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds