Wall clock time and date at job start Tue Mar 31 2020 09:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53007 * 109.46779 * 2 1 4 4 C 1.52997 * 109.46784 * 119.99717 * 2 1 3 5 5 C 1.50694 * 109.47460 * 300.00248 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48490 * 109.47339 * 179.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 300.00306 * 9 7 5 12 12 H 1.48504 * 109.46636 * 59.99865 * 9 7 5 13 13 C 1.52995 * 109.47410 * 240.00272 * 2 1 3 14 14 N 1.46896 * 109.47208 * 59.99631 * 13 2 1 15 15 C 1.46907 * 110.99733 * 180.02562 * 14 13 2 16 16 C 1.53000 * 109.46848 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.34096 * 304.67198 * 16 15 14 18 18 O 1.42718 * 109.33997 * 64.19135 * 16 15 14 19 19 C 1.43211 * 113.14678 * 171.99918 * 18 16 15 20 20 C 1.52970 * 108.47929 * 289.33971 * 19 18 16 21 21 C 1.50748 * 109.76344 * 49.22086 * 20 19 18 22 22 C 1.38593 * 118.76478 * 163.21152 * 21 20 19 23 23 C 1.38065 * 120.27475 * 179.53147 * 22 21 20 24 24 C 1.38260 * 119.86442 * 0.02562 * 23 22 21 25 25 C 1.38055 * 119.89637 * 0.09880 * 24 23 22 26 26 C 1.37910 * 121.34674 * 342.92337 * 21 20 19 27 27 H 1.08993 * 109.47049 * 299.99824 * 1 2 3 28 28 H 1.09001 * 109.46762 * 60.00206 * 1 2 3 29 29 H 1.08999 * 109.46696 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46630 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46852 * 299.99745 * 3 2 1 32 32 H 1.08998 * 109.46963 * 59.99562 * 3 2 1 33 33 H 1.09005 * 109.46800 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.47382 * 60.00518 * 4 2 1 35 35 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.47128 * 180.02562 * 13 2 1 37 37 H 1.09006 * 109.46661 * 299.99799 * 13 2 1 38 38 H 1.00896 * 110.99809 * 56.05270 * 14 13 2 39 39 H 1.08992 * 109.47248 * 300.00172 * 15 14 13 40 40 H 1.09001 * 109.47119 * 60.00189 * 15 14 13 41 41 H 1.08994 * 109.63425 * 169.64111 * 19 18 16 42 42 H 1.09000 * 109.62990 * 49.03770 * 19 18 16 43 43 H 1.08996 * 109.42506 * 289.13483 * 20 19 18 44 44 H 1.08997 * 109.37014 * 169.28111 * 20 19 18 45 45 H 1.08004 * 119.86256 * 359.52510 * 22 21 20 46 46 H 1.08004 * 120.06776 * 180.02562 * 23 22 21 47 47 H 1.08002 * 120.05547 * 180.02562 * 24 23 22 48 48 H 1.07994 * 119.84854 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8710 -0.4815 3.7320 8 7 2.6271 -1.5508 3.8527 9 14 1.2489 0.3994 5.2572 10 1 1.7437 -0.3006 6.4697 11 1 1.7439 1.7994 5.2567 12 1 -0.2361 0.3994 5.2576 13 6 2.0401 -0.7212 -1.2492 14 7 1.5505 -0.0287 -2.4486 15 6 2.0211 -0.6952 -3.6703 16 6 1.4926 0.0534 -4.8955 17 1 0.4066 0.1248 -4.8342 18 8 2.0488 1.3674 -4.9228 19 6 1.7538 2.0786 -6.1304 20 6 2.5496 1.4451 -7.2729 21 6 2.3616 -0.0505 -7.2571 22 6 2.6956 -0.7767 -8.3893 23 6 2.5450 -2.1490 -8.4056 24 6 2.0585 -2.8015 -7.2880 25 6 1.7231 -2.0786 -6.1607 26 6 1.8731 -0.7005 -6.1432 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2493 35 1 2.8621 -1.8818 4.7337 36 1 3.1302 -0.7215 -1.2489 37 1 1.6768 -1.7489 -1.2492 38 1 1.8199 0.9436 -2.4401 39 1 3.1109 -0.6954 -3.6872 40 1 1.6573 -1.7226 -3.6868 41 1 2.0413 3.1240 -6.0193 42 1 0.6873 2.0098 -6.3446 43 1 3.6073 1.6787 -7.1510 44 1 2.1974 1.8447 -8.2238 45 1 3.0752 -0.2669 -9.2626 46 1 2.8067 -2.7116 -9.2896 47 1 1.9398 -3.8750 -7.2973 48 1 1.3427 -2.5891 -5.2883 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362907350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:31 Heat of formation + Delta-G solvation = -57.499816 kcal Electronic energy + Delta-G solvation = -24796.274615 eV Core-core repulsion = 21428.232230 eV Total energy + Delta-G solvation = -3368.042386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37731 -39.21197 -38.45065 -36.09744 -34.48824 -33.58262 -32.69452 -30.46266 -29.13428 -28.12758 -27.88054 -26.33382 -24.86375 -24.55448 -23.70333 -22.20974 -20.98773 -19.53041 -18.32997 -18.16732 -17.39525 -17.19094 -16.57001 -16.47042 -15.99684 -15.66590 -15.64403 -15.05769 -14.93913 -14.64631 -14.53518 -14.25926 -13.99860 -13.88037 -13.61549 -13.40973 -13.32828 -12.92231 -12.79038 -12.70342 -12.68310 -12.50031 -12.31498 -12.23264 -12.12319 -11.91978 -11.78890 -11.52206 -11.36848 -10.85460 -10.75758 -10.57531 -10.48930 -9.71948 -9.54906 -9.33668 -8.12838 -6.19876 0.35499 0.42638 1.41533 1.44081 1.51318 2.44755 2.71833 2.83577 3.18065 3.20888 3.70527 3.78096 3.88825 3.97912 4.14786 4.17597 4.22200 4.24786 4.30045 4.35359 4.39463 4.51211 4.59981 4.64257 4.67268 4.77418 4.81702 4.86085 4.92774 4.97009 4.99715 5.07433 5.09582 5.17246 5.21784 5.23153 5.50981 5.52551 5.54531 5.58534 5.59300 5.61017 5.66698 5.88051 5.93488 6.04009 6.06648 6.19688 6.37828 6.50793 6.94868 7.47225 8.99465 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.029435 B = 0.002628 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.033317 B =10650.340370 C =11250.623546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.288 1.288 11 H -0.268 1.268 12 H -0.268 1.268 13 C 0.081 3.919 14 N -0.678 5.678 15 C 0.072 3.928 16 C 0.141 3.859 17 H 0.077 0.923 18 O -0.391 6.391 19 C 0.054 3.946 20 C -0.112 4.112 21 C -0.088 4.088 22 C -0.126 4.126 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.130 4.130 27 H 0.039 0.961 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.048 0.952 33 H -0.018 1.018 34 H -0.014 1.014 35 H 0.260 0.740 36 H 0.014 0.986 37 H 0.061 0.939 38 H 0.348 0.652 39 H 0.024 0.976 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.144 0.856 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 3.798 -28.219 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.055 4.055 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.084 0.916 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.213 1.213 11 H -0.193 1.193 12 H -0.193 1.193 13 C -0.048 4.048 14 N -0.310 5.310 15 C -0.057 4.057 16 C 0.083 3.917 17 H 0.095 0.905 18 O -0.310 6.310 19 C -0.023 4.023 20 C -0.149 4.149 21 C -0.088 4.088 22 C -0.144 4.144 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.141 4.141 26 C -0.131 4.131 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.001 0.999 34 H 0.004 0.996 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.168 0.832 39 H 0.042 0.958 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.125 0.875 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.191 3.454 -27.942 28.240 hybrid contribution 0.894 -0.046 1.074 1.398 sum -1.297 3.408 -26.867 27.114 Atomic orbital electron populations 1.21496 0.94109 1.00200 1.00535 1.20486 0.96440 0.95479 0.93061 1.21680 0.99308 0.95786 1.01132 1.19002 0.93884 0.94172 0.92679 1.21589 1.30272 1.11961 0.91428 0.91575 1.25934 0.95709 0.95924 1.02600 1.70109 1.38836 1.24965 1.24084 0.85618 0.78957 0.78769 0.78435 1.21347 1.19291 1.19267 1.21838 0.95692 0.97706 0.89557 1.60531 1.63015 1.06998 1.00454 1.22032 0.97238 0.98195 0.88222 1.20789 0.97443 0.82268 0.91195 0.90516 1.88033 1.76807 1.26422 1.39751 1.22824 0.99086 0.96866 0.83478 1.21171 1.02190 0.90620 1.00947 1.19816 0.98831 0.96738 0.93442 1.21369 1.00377 0.94599 0.98043 1.21477 0.98681 0.94730 0.99041 1.21410 0.99267 1.00992 0.93188 1.21303 1.00270 0.93177 0.99358 1.20259 1.01881 0.94972 0.95959 0.94169 0.91479 0.94901 0.94736 0.91646 0.93264 0.99929 0.99602 0.93167 0.96819 0.92091 0.83249 0.95776 0.89002 0.86583 0.92179 0.89758 0.87483 0.83859 0.83648 0.84153 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 2 C -0.05 -2.23 0.60 -52.18 -0.03 -2.27 16 3 C -0.12 -4.63 7.89 71.98 0.57 -4.07 16 4 C 0.04 2.13 4.04 29.85 0.12 2.26 16 5 C -0.51 -28.95 7.65 25.60 0.20 -28.76 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.54 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16 9 Si 0.96 45.00 29.54 68.60 2.03 47.02 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 C 0.08 2.93 4.65 86.30 0.40 3.33 16 14 N -0.68 -20.28 5.71 -513.89 -2.94 -23.22 16 15 C 0.07 1.90 5.07 86.30 0.44 2.33 16 16 C 0.14 3.28 2.96 29.83 0.09 3.37 16 17 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 18 O -0.39 -9.26 9.92 -148.98 -1.48 -10.74 16 19 C 0.05 0.87 6.85 71.97 0.49 1.37 16 20 C -0.11 -1.62 6.00 29.85 0.18 -1.44 16 21 C -0.09 -1.64 5.78 -19.84 -0.11 -1.76 16 22 C -0.13 -1.95 9.67 22.31 0.22 -1.73 16 23 C -0.12 -1.80 10.05 22.23 0.22 -1.57 16 24 C -0.13 -2.18 10.05 22.23 0.22 -1.96 16 25 C -0.12 -2.45 9.08 22.32 0.20 -2.25 16 26 C -0.13 -2.79 5.47 -19.86 -0.11 -2.90 16 27 H 0.04 1.66 6.62 -2.39 -0.02 1.64 16 28 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 2.09 6.57 -2.39 -0.02 2.07 16 32 H 0.05 2.00 6.62 -2.39 -0.02 1.99 16 33 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 34 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 35 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 38 H 0.35 10.41 6.30 -89.70 -0.56 9.84 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 2.25 6.33 -2.39 -0.02 2.23 16 41 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 0.91 8.07 -2.39 -0.02 0.89 16 43 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 48 H 0.13 2.39 6.45 -2.91 -0.02 2.38 16 Total: -1.00 -66.83 371.39 2.40 -64.43 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.37 Total: 19.84 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 4.14 Total: -39.43 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -2.65 Total: -81.13 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: -1.48 Total: -10.74 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.83 2.40 -64.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362907350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.929 kcal (2) G-P(sol) polarization free energy of solvation -66.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds