Wall clock time and date at job start Tue Mar 31 2020 09:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 C 1.53001 * 109.47238 * 240.00504 * 2 1 3 5 5 C 1.50703 * 109.47124 * 59.99932 * 4 2 1 6 6 H 1.08004 * 119.99783 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99924 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00014 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47164 * 90.00527 * 9 7 5 11 11 H 1.48499 * 109.47472 * 210.00582 * 9 7 5 12 12 H 1.48501 * 109.47118 * 330.00629 * 9 7 5 13 13 C 1.52994 * 109.47547 * 120.00385 * 2 1 3 14 14 N 1.46904 * 109.47007 * 294.72735 * 13 2 1 15 15 C 1.46427 * 110.99967 * 86.61528 * 14 13 2 16 16 C 1.53389 * 108.64559 * 178.88397 * 15 14 13 17 17 H 1.09007 * 109.81828 * 51.34116 * 16 15 14 18 18 C 1.52994 * 109.77300 * 172.10472 * 16 15 14 19 19 O 1.42898 * 109.47331 * 183.46364 * 18 16 15 20 20 C 1.53048 * 107.91671 * 291.71313 * 16 15 14 21 21 C 1.50804 * 109.65669 * 47.27937 * 20 16 15 22 22 C 1.38613 * 118.11925 * 164.60089 * 21 20 16 23 23 C 1.38054 * 120.48914 * 179.74051 * 22 21 20 24 24 C 1.38315 * 119.88638 * 359.97438 * 23 22 21 25 25 C 1.37806 * 119.94987 * 0.12395 * 24 23 22 26 26 C 1.38370 * 122.01636 * 344.52758 * 21 20 16 27 27 H 1.09000 * 109.47213 * 311.85956 * 1 2 3 28 28 H 1.09007 * 109.47329 * 71.86119 * 1 2 3 29 29 H 1.09000 * 109.47071 * 191.86174 * 1 2 3 30 30 H 1.08997 * 109.47369 * 176.04274 * 3 2 1 31 31 H 1.08997 * 109.47511 * 296.04918 * 3 2 1 32 32 H 1.09008 * 109.46497 * 56.04228 * 3 2 1 33 33 H 1.08998 * 109.47320 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47001 * 299.99881 * 4 2 1 35 35 H 0.97000 * 119.99597 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47421 * 174.72608 * 13 2 1 37 37 H 1.09000 * 109.47324 * 54.72404 * 13 2 1 38 38 H 1.08996 * 109.60764 * 59.13881 * 15 14 13 39 39 H 1.09002 * 109.74649 * 298.70971 * 15 14 13 40 40 H 1.08995 * 109.47282 * 303.46749 * 18 16 15 41 41 H 1.09010 * 109.47012 * 63.46981 * 18 16 15 42 42 H 0.96695 * 114.00660 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.43498 * 167.32977 * 20 16 15 44 44 H 1.08998 * 109.43928 * 287.21648 * 20 16 15 45 45 H 1.08003 * 119.75858 * 359.74814 * 22 21 20 46 46 H 1.07992 * 120.05957 * 179.97438 * 23 22 21 47 47 H 1.07995 * 120.02390 * 180.09187 * 24 23 22 48 48 H 1.08005 * 119.78773 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0106 -2.4797 6 1 0.9163 0.8672 -2.3805 7 6 1.8703 -0.4819 -3.7320 8 7 1.4323 0.1385 -4.8058 9 14 2.9443 -2.0006 -3.9036 10 1 2.0857 -3.2115 -3.9486 11 1 3.7359 -1.9082 -5.1566 12 1 3.8650 -2.0896 -2.7418 13 6 2.0400 -0.7213 1.2491 14 7 1.6571 0.0407 2.4453 15 6 0.3157 -0.3329 2.8983 16 6 -0.0172 0.4715 4.1612 17 1 0.1604 1.5319 3.9815 18 6 -1.4815 0.2499 4.5450 19 8 -1.8066 1.0638 5.6737 20 6 0.8937 -0.0223 5.2876 21 6 2.3153 -0.1050 4.7911 22 6 3.3297 -0.2148 5.7293 23 6 4.6481 -0.2992 5.3288 24 6 4.9622 -0.2749 3.9820 25 6 3.9592 -0.1639 3.0435 26 6 2.6242 -0.0757 3.4426 27 1 -0.3633 0.6858 0.7654 28 1 -0.3634 0.3199 -0.9766 29 1 -0.3633 -1.0057 0.2112 30 1 3.1276 1.4434 0.0709 31 1 1.7356 1.9356 -0.9232 32 1 1.6198 1.9764 0.8525 33 1 3.1299 -0.7207 -1.2495 34 1 1.6767 -1.7488 -1.2494 35 1 1.6667 -0.1929 -5.6868 36 1 3.1259 -0.8038 1.2031 37 1 1.6016 -1.7181 1.2976 38 1 0.2902 -1.3985 3.1261 39 1 -0.4123 -0.1078 2.1188 40 1 -2.1220 0.5203 3.7056 41 1 -1.6363 -0.7993 4.7970 42 1 -2.7216 0.9740 5.9730 43 1 0.8423 0.6720 6.1264 44 1 0.5652 -1.0091 5.6136 45 1 3.0869 -0.2345 6.7815 46 1 5.4330 -0.3841 6.0657 47 1 5.9927 -0.3423 3.6661 48 1 4.2074 -0.1447 1.9926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367797590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:37 Heat of formation + Delta-G solvation = -23.677885 kcal Electronic energy + Delta-G solvation = -25893.356145 eV Core-core repulsion = 22526.780388 eV Total energy + Delta-G solvation = -3366.575757 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76942 -37.68980 -37.49119 -35.57167 -33.89324 -32.17635 -30.89761 -29.71423 -27.71221 -26.99293 -26.25629 -25.97310 -23.95370 -22.81957 -21.87722 -21.12483 -19.48880 -17.85538 -17.68752 -16.88006 -16.81099 -16.12328 -15.84470 -14.83390 -14.52934 -14.48781 -14.14751 -14.07872 -13.63641 -13.52541 -13.35511 -13.02805 -12.81938 -12.69920 -12.50053 -12.19137 -12.00787 -11.79816 -11.54570 -11.24181 -11.12730 -10.91095 -10.79618 -10.65811 -10.55245 -10.44200 -10.31028 -10.15527 -9.87861 -9.73381 -9.65889 -9.22513 -8.90007 -8.65159 -8.51716 -7.46919 -6.02037 -3.98443 1.46099 1.53115 3.30236 3.38581 3.41372 3.60293 3.89265 4.18701 4.46239 4.54362 4.67914 4.91672 4.94835 5.07415 5.18610 5.25593 5.29505 5.31407 5.38443 5.44150 5.46412 5.54220 5.58775 5.65017 5.70906 5.80027 5.89329 5.99708 6.03689 6.08671 6.16768 6.22093 6.34961 6.37073 6.53250 6.57102 6.65666 6.67097 6.76539 6.89660 7.04160 7.13551 7.17749 7.25817 7.31513 7.39148 7.43333 7.51608 7.82499 8.57108 9.03520 9.60830 11.10951 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.004269 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.955890 B = 6557.606325 C = 7896.896796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.118 4.118 4 C -0.004 4.004 5 C -0.507 4.507 6 H 0.079 0.921 7 C 0.066 3.934 8 N -0.905 5.905 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.267 1.267 13 C 0.053 3.947 14 N -0.479 5.479 15 C 0.049 3.951 16 C -0.090 4.090 17 H 0.091 0.909 18 C 0.084 3.916 19 O -0.572 6.572 20 C -0.063 4.063 21 C -0.134 4.134 22 C -0.093 4.093 23 C -0.161 4.161 24 C -0.095 4.095 25 C -0.166 4.166 26 C 0.140 3.860 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.015 0.985 34 H 0.009 0.991 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.046 0.954 42 H 0.378 0.622 43 H 0.078 0.922 44 H 0.067 0.933 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.119 0.881 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 -2.075 21.884 22.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 C -0.176 4.176 4 C -0.042 4.042 5 C -0.545 4.545 6 H 0.097 0.903 7 C -0.135 4.135 8 N -0.544 5.544 9 Si 0.702 3.298 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.072 4.072 14 N -0.190 5.190 15 C -0.077 4.077 16 C -0.109 4.109 17 H 0.109 0.891 18 C 0.006 3.994 19 O -0.377 6.377 20 C -0.100 4.100 21 C -0.138 4.138 22 C -0.111 4.111 23 C -0.180 4.180 24 C -0.113 4.113 25 C -0.187 4.187 26 C 0.040 3.960 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.225 0.775 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.134 0.866 46 H 0.134 0.866 47 H 0.137 0.863 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.944 -1.437 21.404 21.473 hybrid contribution 0.114 -1.724 -0.058 1.729 sum -0.830 -3.162 21.345 21.594 Atomic orbital electron populations 1.22047 0.95622 0.99430 1.02329 1.20405 0.95287 0.96147 0.92609 1.21629 0.99356 0.95477 1.01111 1.19623 0.96037 0.95321 0.93226 1.21109 1.31567 1.13238 0.88608 0.90340 1.25005 0.95751 0.96716 0.96015 1.69908 1.46083 1.40567 0.97846 0.86864 0.81328 0.83995 0.77566 1.20501 1.21534 1.19129 1.22875 1.01632 0.94384 0.88299 1.57932 1.01442 1.54223 1.05425 1.22531 0.90522 0.97291 0.97320 1.21263 0.93065 1.02042 0.94550 0.89090 1.22134 0.95553 0.93558 0.88200 1.86475 1.33943 1.67959 1.49296 1.20441 0.90402 1.01209 0.97935 1.19499 0.95771 1.06759 0.91759 1.20867 0.92422 0.99307 0.98535 1.20890 0.96112 1.05141 0.95850 1.20913 0.98757 0.98661 0.92995 1.21281 0.91512 1.05521 1.00336 1.18750 0.91568 0.95482 0.90213 0.93684 0.90705 0.94392 0.94415 0.91751 0.93720 0.96697 0.97311 0.92862 0.89672 0.93596 0.93874 0.87562 0.93082 0.93610 0.77528 0.90369 0.91430 0.86581 0.86640 0.86316 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 6.89 37.15 0.26 -2.18 16 2 C -0.04 -0.82 0.61 -154.51 -0.09 -0.92 16 3 C -0.12 -2.25 7.98 37.16 0.30 -1.96 16 4 C 0.00 -0.10 3.11 -27.88 -0.09 -0.18 16 5 C -0.51 -13.70 7.99 -34.44 -0.28 -13.97 16 6 H 0.08 2.27 6.01 -52.48 -0.32 1.95 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 9 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 13 C 0.05 0.85 4.02 -3.82 -0.02 0.83 16 14 N -0.48 -7.05 3.45 -171.28 -0.59 -7.64 16 15 C 0.05 0.63 4.27 -3.88 -0.02 0.61 16 16 C -0.09 -1.05 2.65 -90.40 -0.24 -1.29 16 17 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 18 C 0.08 0.78 6.44 37.15 0.24 1.01 16 19 O -0.57 -5.35 13.43 -35.23 -0.47 -5.82 16 20 C -0.06 -0.72 4.94 -27.81 -0.14 -0.86 16 21 C -0.13 -1.77 5.74 -104.38 -0.60 -2.37 16 22 C -0.09 -1.10 9.63 -39.51 -0.38 -1.48 16 23 C -0.16 -1.86 10.05 -39.62 -0.40 -2.26 16 24 C -0.09 -1.18 10.04 -39.71 -0.40 -1.58 16 25 C -0.17 -2.36 8.83 -39.23 -0.35 -2.71 16 26 C 0.14 2.03 5.83 -83.85 -0.49 1.54 16 27 H 0.04 0.71 6.00 -51.93 -0.31 0.40 16 28 H 0.07 1.53 6.32 -51.93 -0.33 1.21 16 29 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.37 6.50 -51.93 -0.34 1.03 16 32 H 0.04 0.79 7.58 -51.92 -0.39 0.40 16 33 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 34 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.09 1.37 4.80 -51.93 -0.25 1.12 16 37 H 0.05 0.73 7.71 -51.93 -0.40 0.33 16 38 H 0.04 0.53 8.00 -51.93 -0.42 0.12 16 39 H 0.11 1.35 4.34 -51.93 -0.23 1.13 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.37 8.10 -51.92 -0.42 -0.05 16 42 H 0.38 1.78 9.12 45.56 0.42 2.19 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.71 8.05 -51.93 -0.42 0.30 16 45 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 46 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 48 H 0.13 1.91 5.83 -52.48 -0.31 1.61 16 LS Contribution 359.62 15.07 5.42 5.42 Total: -1.00 -30.91 359.62 -9.33 -40.25 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.01 Total: 3.61 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -2.78 Total: -25.97 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.18 Total: -34.26 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.47 Total: -5.82 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.91 -9.33 -40.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367797590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.567 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds