Wall clock time and date at job start Tue Mar 31 2020 09:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 C 1.53001 * 109.47238 * 240.00504 * 2 1 3 5 5 C 1.50703 * 109.47124 * 59.99932 * 4 2 1 6 6 H 1.08004 * 119.99783 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00025 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99924 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00014 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47164 * 90.00527 * 9 7 5 11 11 H 1.48499 * 109.47472 * 210.00582 * 9 7 5 12 12 H 1.48501 * 109.47118 * 330.00629 * 9 7 5 13 13 C 1.52994 * 109.47547 * 120.00385 * 2 1 3 14 14 N 1.46904 * 109.47007 * 294.72735 * 13 2 1 15 15 C 1.46427 * 110.99967 * 86.61528 * 14 13 2 16 16 C 1.53389 * 108.64559 * 178.88397 * 15 14 13 17 17 H 1.09007 * 109.81828 * 51.34116 * 16 15 14 18 18 C 1.52994 * 109.77300 * 172.10472 * 16 15 14 19 19 O 1.42898 * 109.47331 * 183.46364 * 18 16 15 20 20 C 1.53048 * 107.91671 * 291.71313 * 16 15 14 21 21 C 1.50804 * 109.65669 * 47.27937 * 20 16 15 22 22 C 1.38613 * 118.11925 * 164.60089 * 21 20 16 23 23 C 1.38054 * 120.48914 * 179.74051 * 22 21 20 24 24 C 1.38315 * 119.88638 * 359.97438 * 23 22 21 25 25 C 1.37806 * 119.94987 * 0.12395 * 24 23 22 26 26 C 1.38370 * 122.01636 * 344.52758 * 21 20 16 27 27 H 1.09000 * 109.47213 * 311.85956 * 1 2 3 28 28 H 1.09007 * 109.47329 * 71.86119 * 1 2 3 29 29 H 1.09000 * 109.47071 * 191.86174 * 1 2 3 30 30 H 1.08997 * 109.47369 * 176.04274 * 3 2 1 31 31 H 1.08997 * 109.47511 * 296.04918 * 3 2 1 32 32 H 1.09008 * 109.46497 * 56.04228 * 3 2 1 33 33 H 1.08998 * 109.47320 * 179.97438 * 4 2 1 34 34 H 1.08997 * 109.47001 * 299.99881 * 4 2 1 35 35 H 0.97000 * 119.99597 * 179.97438 * 8 7 5 36 36 H 1.08997 * 109.47421 * 174.72608 * 13 2 1 37 37 H 1.09000 * 109.47324 * 54.72404 * 13 2 1 38 38 H 1.08996 * 109.60764 * 59.13881 * 15 14 13 39 39 H 1.09002 * 109.74649 * 298.70971 * 15 14 13 40 40 H 1.08995 * 109.47282 * 303.46749 * 18 16 15 41 41 H 1.09010 * 109.47012 * 63.46981 * 18 16 15 42 42 H 0.96695 * 114.00660 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.43498 * 167.32977 * 20 16 15 44 44 H 1.08998 * 109.43928 * 287.21648 * 20 16 15 45 45 H 1.08003 * 119.75858 * 359.74814 * 22 21 20 46 46 H 1.07992 * 120.05957 * 179.97438 * 23 22 21 47 47 H 1.07995 * 120.02390 * 180.09187 * 24 23 22 48 48 H 1.08005 * 119.78773 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.5376 -0.0106 -2.4797 6 1 0.9163 0.8672 -2.3805 7 6 1.8703 -0.4819 -3.7320 8 7 1.4323 0.1385 -4.8058 9 14 2.9443 -2.0006 -3.9036 10 1 2.0857 -3.2115 -3.9486 11 1 3.7359 -1.9082 -5.1566 12 1 3.8650 -2.0896 -2.7418 13 6 2.0400 -0.7213 1.2491 14 7 1.6571 0.0407 2.4453 15 6 0.3157 -0.3329 2.8983 16 6 -0.0172 0.4715 4.1612 17 1 0.1604 1.5319 3.9815 18 6 -1.4815 0.2499 4.5450 19 8 -1.8066 1.0638 5.6737 20 6 0.8937 -0.0223 5.2876 21 6 2.3153 -0.1050 4.7911 22 6 3.3297 -0.2148 5.7293 23 6 4.6481 -0.2992 5.3288 24 6 4.9622 -0.2749 3.9820 25 6 3.9592 -0.1639 3.0435 26 6 2.6242 -0.0757 3.4426 27 1 -0.3633 0.6858 0.7654 28 1 -0.3634 0.3199 -0.9766 29 1 -0.3633 -1.0057 0.2112 30 1 3.1276 1.4434 0.0709 31 1 1.7356 1.9356 -0.9232 32 1 1.6198 1.9764 0.8525 33 1 3.1299 -0.7207 -1.2495 34 1 1.6767 -1.7488 -1.2494 35 1 1.6667 -0.1929 -5.6868 36 1 3.1259 -0.8038 1.2031 37 1 1.6016 -1.7181 1.2976 38 1 0.2902 -1.3985 3.1261 39 1 -0.4123 -0.1078 2.1188 40 1 -2.1220 0.5203 3.7056 41 1 -1.6363 -0.7993 4.7970 42 1 -2.7216 0.9740 5.9730 43 1 0.8423 0.6720 6.1264 44 1 0.5652 -1.0091 5.6136 45 1 3.0869 -0.2345 6.7815 46 1 5.4330 -0.3841 6.0657 47 1 5.9927 -0.3423 3.6661 48 1 4.2074 -0.1447 1.9926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367797590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:36 Heat of formation + Delta-G solvation = -42.491896 kcal Electronic energy + Delta-G solvation = -25894.171982 eV Core-core repulsion = 22526.780388 eV Total energy + Delta-G solvation = -3367.391593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79922 -38.93147 -38.32426 -36.68230 -35.07306 -34.12594 -31.80794 -30.79182 -29.55019 -28.29163 -27.70250 -26.80137 -25.12130 -24.43470 -22.76879 -22.36833 -20.41804 -19.37997 -18.88008 -18.47754 -17.80046 -17.08789 -16.83324 -16.26914 -15.84562 -15.64457 -15.44704 -15.09619 -14.89801 -14.71179 -14.38537 -14.36778 -14.15324 -13.95236 -13.81234 -13.60194 -13.40130 -12.83351 -12.78284 -12.66198 -12.45846 -12.32335 -12.24778 -12.06817 -11.90081 -11.72336 -11.65771 -11.40437 -11.24873 -11.15760 -10.89972 -10.81418 -10.69130 -10.47723 -9.59789 -8.50453 -8.21043 -6.21252 0.50838 0.56126 1.35928 1.38407 1.48827 2.39902 2.61213 2.96923 3.14163 3.37074 3.65828 3.79897 3.89823 4.06588 4.14916 4.21827 4.22723 4.30497 4.37039 4.41556 4.46050 4.56108 4.57586 4.61835 4.68243 4.74345 4.77688 4.83780 4.87135 4.94794 4.99785 5.05350 5.09765 5.17039 5.22999 5.26815 5.36011 5.39056 5.44133 5.50554 5.60130 5.64005 5.71117 5.73818 5.80847 5.95840 6.17316 6.41484 6.47646 6.85686 6.95134 7.41012 8.95141 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015657 B = 0.004269 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.955890 B = 6557.606325 C = 7896.896796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.041 4.041 3 C -0.108 4.108 4 C -0.002 4.002 5 C -0.502 4.502 6 H 0.045 0.955 7 C 0.003 3.997 8 N -0.954 5.954 9 Si 0.939 3.061 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.249 1.249 13 C 0.064 3.936 14 N -0.488 5.488 15 C 0.049 3.951 16 C -0.087 4.087 17 H 0.067 0.933 18 C 0.088 3.912 19 O -0.589 6.589 20 C -0.057 4.057 21 C -0.144 4.144 22 C -0.096 4.096 23 C -0.159 4.159 24 C -0.101 4.101 25 C -0.185 4.185 26 C 0.119 3.881 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.031 0.969 32 H 0.056 0.944 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.398 0.602 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.136 0.864 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 -3.731 24.915 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.042 4.042 3 C -0.165 4.165 4 C -0.040 4.040 5 C -0.540 4.540 6 H 0.063 0.937 7 C -0.193 4.193 8 N -0.596 5.596 9 Si 0.763 3.237 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.173 1.173 13 C -0.061 4.061 14 N -0.199 5.199 15 C -0.076 4.076 16 C -0.105 4.105 17 H 0.086 0.914 18 C 0.010 3.990 19 O -0.397 6.397 20 C -0.094 4.094 21 C -0.147 4.147 22 C -0.115 4.115 23 C -0.178 4.178 24 C -0.119 4.119 25 C -0.206 4.206 26 C 0.020 3.980 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.121 0.879 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.248 0.752 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.154 0.846 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.413 -3.094 24.475 24.673 hybrid contribution -0.073 -1.109 -0.909 1.436 sum -0.486 -4.202 23.565 23.942 Atomic orbital electron populations 1.21955 0.94906 1.00797 1.00943 1.20303 0.95866 0.95546 0.92493 1.21499 0.99331 0.95833 0.99829 1.19569 0.95762 0.95437 0.93192 1.21390 1.30125 1.12096 0.90392 0.93723 1.25889 0.97512 1.00144 0.95737 1.70064 1.48303 1.42806 0.98453 0.85831 0.79780 0.80117 0.77935 1.19488 1.21615 1.17258 1.22599 1.01563 0.94243 0.87736 1.57863 1.02391 1.54388 1.05272 1.22551 0.89414 0.97928 0.97754 1.21188 0.94889 1.00311 0.94157 0.91434 1.22058 0.93913 0.94490 0.88550 1.86418 1.35917 1.68172 1.49239 1.20425 0.89467 1.01862 0.97679 1.19777 0.97051 1.06449 0.91449 1.21208 0.92322 0.98396 0.99563 1.21247 0.96847 1.03685 0.95998 1.21181 0.99290 0.98147 0.93302 1.21351 0.92127 1.06800 1.00318 1.18881 0.91508 0.96893 0.90737 0.91627 0.94273 0.92823 0.94427 0.94961 0.92485 0.96833 0.96704 0.92915 0.89694 0.92969 0.93105 0.87867 0.92574 0.91894 0.75211 0.90271 0.90135 0.84259 0.84023 0.84612 0.86016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 6.89 71.98 0.50 -4.07 16 2 C -0.04 -1.55 0.61 -52.18 -0.03 -1.58 16 3 C -0.11 -4.18 7.98 71.98 0.57 -3.60 16 4 C 0.00 -0.08 3.11 29.85 0.09 0.01 16 5 C -0.50 -27.91 7.99 25.60 0.20 -27.70 16 6 H 0.04 2.73 6.01 -2.91 -0.02 2.71 16 7 C 0.00 0.17 5.47 84.65 0.46 0.63 16 8 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 9 Si 0.94 44.28 27.47 68.60 1.88 46.16 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 13 C 0.06 1.98 4.02 86.30 0.35 2.33 16 14 N -0.49 -13.76 3.45 -695.81 -2.40 -16.16 16 15 C 0.05 1.16 4.27 86.52 0.37 1.53 16 16 C -0.09 -1.85 2.65 -10.65 -0.03 -1.88 16 17 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 18 C 0.09 1.41 6.44 71.98 0.46 1.88 16 19 O -0.59 -9.63 13.43 -148.98 -2.00 -11.63 16 20 C -0.06 -1.17 4.94 29.90 0.15 -1.03 16 21 C -0.14 -3.47 5.74 -19.71 -0.11 -3.59 16 22 C -0.10 -2.01 9.63 22.32 0.21 -1.80 16 23 C -0.16 -3.21 10.05 22.24 0.22 -2.98 16 24 C -0.10 -2.30 10.04 22.19 0.22 -2.08 16 25 C -0.19 -5.06 8.83 22.50 0.20 -4.86 16 26 C 0.12 3.29 5.83 38.30 0.22 3.52 16 27 H 0.07 2.03 6.00 -2.39 -0.01 2.01 16 28 H 0.04 1.65 6.32 -2.38 -0.02 1.63 16 29 H 0.05 1.70 7.91 -2.39 -0.02 1.68 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 1.43 6.50 -2.39 -0.02 1.41 16 32 H 0.06 2.04 7.58 -2.38 -0.02 2.02 16 33 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 34 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.09 2.66 4.80 -2.39 -0.01 2.65 16 37 H 0.05 1.55 7.71 -2.39 -0.02 1.53 16 38 H 0.05 1.13 8.00 -2.39 -0.02 1.11 16 39 H 0.10 2.45 4.34 -2.39 -0.01 2.44 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 0.81 8.10 -2.38 -0.02 0.79 16 42 H 0.40 2.73 9.12 -74.06 -0.68 2.06 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.44 8.05 -2.39 -0.02 1.42 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 46 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 48 H 0.12 3.48 5.83 -2.91 -0.02 3.46 16 Total: -1.00 -68.03 359.62 2.07 -65.95 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.22 Total: 20.39 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 4.07 Total: -45.26 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.10 Total: -75.62 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -2.00 Total: -11.63 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -68.03 2.07 -65.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367797590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.462 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds