Wall clock time and date at job start Tue Mar 31 2020 09:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53008 * 109.47174 * 119.99664 * 2 1 3 5 5 C 1.50699 * 109.46923 * 300.00294 * 4 2 1 6 6 H 1.07998 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99894 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47103 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47064 * 119.99977 * 9 7 5 12 12 H 1.48497 * 109.47381 * 239.99758 * 9 7 5 13 13 C 1.52999 * 109.47410 * 239.99447 * 2 1 3 14 14 N 1.46907 * 109.47021 * 81.95673 * 13 2 1 15 15 C 1.47899 * 110.99670 * 77.21789 * 14 13 2 16 16 C 1.54000 * 107.05890 * 214.15632 * 15 14 13 17 17 C 1.54594 * 105.13784 * 1.22888 * 16 15 14 18 18 H 1.08997 * 110.72497 * 263.42189 * 17 16 15 19 19 O 1.42896 * 110.72361 * 140.31373 * 17 16 15 20 20 C 1.35903 * 117.00185 * 96.27107 * 19 17 16 21 21 C 1.38728 * 120.05844 * 184.64045 * 20 19 17 22 22 C 1.38146 * 119.94405 * 179.74306 * 21 20 19 23 23 C 1.38269 * 120.05223 * 0.50983 * 22 21 20 24 24 C 1.38256 * 120.11305 * 359.77011 * 23 22 21 25 25 C 1.38148 * 120.06002 * 359.97178 * 24 23 22 26 26 C 1.48533 * 110.99636 * 319.82496 * 14 13 2 27 27 H 1.09000 * 109.46931 * 39.03672 * 1 2 3 28 28 H 1.08994 * 109.47085 * 279.03490 * 1 2 3 29 29 H 1.09003 * 109.47201 * 159.03820 * 1 2 3 30 30 H 1.09001 * 109.47305 * 52.42998 * 3 2 1 31 31 H 1.08994 * 109.47423 * 172.43951 * 3 2 1 32 32 H 1.09003 * 109.46571 * 292.43534 * 3 2 1 33 33 H 1.09007 * 109.46875 * 60.00206 * 4 2 1 34 34 H 1.09000 * 109.47084 * 179.97438 * 4 2 1 35 35 H 0.96998 * 120.00203 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47496 * 201.95473 * 13 2 1 37 37 H 1.09002 * 109.47223 * 321.95914 * 13 2 1 38 38 H 1.08997 * 109.92152 * 333.51669 * 15 14 13 39 39 H 1.09006 * 109.91388 * 94.61209 * 15 14 13 40 40 H 1.08993 * 110.30524 * 120.14613 * 16 15 14 41 41 H 1.08998 * 110.30551 * 242.31827 * 16 15 14 42 42 H 1.07998 * 120.02605 * 359.97438 * 21 20 19 43 43 H 1.07998 * 119.97100 * 180.28154 * 22 21 20 44 44 H 1.08007 * 119.93910 * 179.74780 * 23 22 21 45 45 H 1.08006 * 119.97399 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.02920 * 179.97438 * 25 24 23 47 47 H 1.08997 * 110.67229 * 278.15403 * 26 14 13 48 48 H 1.09000 * 110.66864 * 41.29188 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8711 -0.4814 3.7320 8 7 2.6273 -1.5507 3.8527 9 14 1.2490 0.3996 5.2571 10 1 0.4233 1.5658 4.8529 11 1 0.4243 -0.5336 6.0661 12 1 2.4042 0.8665 6.0650 13 6 2.0400 -0.7214 -1.2491 14 7 2.0206 0.2031 -2.3907 15 6 3.1612 1.1428 -2.3312 16 6 2.6721 2.4840 -2.9087 17 6 1.1859 2.2521 -3.2654 18 1 1.0768 2.0029 -4.3209 19 8 0.4015 3.3999 -2.9350 20 6 0.1482 4.2831 -3.9363 21 6 -0.5241 5.4661 -3.6659 22 6 -0.7756 6.3647 -4.6846 23 6 -0.3673 6.0809 -5.9747 24 6 0.2977 4.9000 -6.2479 25 6 0.5564 4.0005 -5.2318 26 6 0.7988 1.0475 -2.3709 27 1 -0.3633 0.7982 -0.6472 28 1 -0.3633 0.1614 1.0149 29 1 -0.3634 -0.9597 -0.3677 30 1 1.5704 1.9939 0.8145 31 1 3.1215 1.4455 0.1352 32 1 1.7913 1.9157 -0.9499 33 1 1.6767 -1.7489 1.2494 34 1 3.1300 -0.7216 1.2491 35 1 2.8616 -1.8820 4.7337 36 1 3.0598 -1.0665 -1.0785 37 1 1.3981 -1.5760 -1.4628 38 1 3.4780 1.2772 -1.2970 39 1 3.9898 0.7590 -2.9263 40 1 2.7634 3.2730 -2.1623 41 1 3.2402 2.7404 -3.8029 42 1 -0.8471 5.6861 -2.6591 43 1 -1.2949 7.2879 -4.4737 44 1 -0.5686 6.7829 -6.7705 45 1 0.6153 4.6804 -7.2566 46 1 1.0756 3.0780 -5.4458 47 1 -0.0481 0.5090 -2.7963 48 1 0.5758 1.3778 -1.3564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374258881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:32 Heat of formation + Delta-G solvation = 46.426413 kcal Electronic energy + Delta-G solvation = -25694.946681 eV Core-core repulsion = 22331.410875 eV Total energy + Delta-G solvation = -3363.535806 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03431 -39.73894 -37.42692 -35.14307 -32.45973 -31.29454 -30.68837 -29.90723 -28.89903 -27.22141 -26.42757 -25.61623 -23.15415 -22.69795 -22.51624 -20.61787 -20.49371 -18.65786 -18.08609 -16.49348 -16.33583 -15.99850 -15.79680 -14.98971 -14.82333 -14.70026 -14.47395 -14.41691 -13.86198 -13.61437 -13.30944 -12.97217 -12.61054 -12.46653 -12.10943 -11.99111 -11.79082 -11.73166 -11.39257 -11.32418 -11.12674 -10.99380 -10.83864 -10.76637 -10.61613 -10.48442 -10.39656 -10.24961 -9.76056 -9.70139 -9.30859 -9.19372 -8.95327 -8.35712 -8.31401 -7.73790 -5.99630 -4.00272 1.15112 1.28378 3.04688 3.29884 3.38094 3.41428 3.61478 4.37305 4.45703 4.57037 4.62465 4.68756 4.71935 4.86280 5.03807 5.17593 5.21281 5.35290 5.37012 5.39920 5.55770 5.59689 5.61364 5.75182 5.78612 5.82465 5.88707 5.97378 6.06045 6.08118 6.19110 6.22768 6.24312 6.34245 6.35195 6.37736 6.45995 6.60782 6.63087 6.69744 7.02245 7.03565 7.18257 7.21379 7.36295 7.42706 7.65344 7.78775 7.99478 8.43538 9.05128 9.62945 11.11628 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.003290 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.094772 B = 8508.847342 C = 9315.273194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.091 4.091 3 C -0.163 4.163 4 C 0.037 3.963 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.052 3.948 14 N -0.509 5.509 15 C 0.009 3.991 16 C -0.148 4.148 17 C 0.072 3.928 18 H 0.087 0.913 19 O -0.303 6.303 20 C 0.138 3.862 21 C -0.156 4.156 22 C -0.082 4.082 23 C -0.166 4.166 24 C -0.080 4.080 25 C -0.214 4.214 26 C -0.006 4.006 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.016 0.984 34 H 0.014 0.986 35 H 0.259 0.741 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.081 0.919 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 11.711 -19.237 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.092 4.092 3 C -0.219 4.219 4 C 0.000 4.000 5 C -0.547 4.547 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.076 4.076 14 N -0.233 5.233 15 C -0.118 4.118 16 C -0.186 4.186 17 C 0.015 3.985 18 H 0.105 0.895 19 O -0.215 6.215 20 C 0.092 3.908 21 C -0.175 4.175 22 C -0.100 4.100 23 C -0.184 4.184 24 C -0.098 4.098 25 C -0.232 4.232 26 C -0.133 4.133 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.149 0.851 47 H 0.099 0.901 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.472 11.257 -19.378 22.678 hybrid contribution -0.109 0.663 1.507 1.650 sum -3.581 11.919 -17.871 21.778 Atomic orbital electron populations 1.22462 0.95558 1.00029 1.02881 1.21155 0.95477 0.95602 0.96979 1.22795 1.00429 0.97039 1.01662 1.19114 0.95842 0.95159 0.89899 1.21269 1.30828 1.11926 0.90667 0.92333 1.25015 0.95371 0.95094 0.99071 1.69971 1.37218 1.23165 1.23243 0.86621 0.78637 0.79759 0.83513 1.19781 1.21122 1.21150 1.22578 1.01877 0.95105 0.88035 1.65014 1.01106 1.15422 1.41757 1.23430 0.94922 0.90639 1.02838 1.22872 0.95085 0.98930 1.01748 1.23550 0.90108 0.84363 1.00447 0.89493 1.86155 1.68150 1.32615 1.34603 1.19092 0.94446 0.89991 0.87228 1.20505 1.03388 0.92935 1.00673 1.20965 0.98102 0.98487 0.92404 1.21036 1.02285 0.98178 0.96931 1.20940 0.96790 0.93521 0.98579 1.21341 1.07145 1.02055 0.92669 1.24507 0.94551 0.91576 1.02640 0.92871 0.91002 0.93787 0.92201 0.92886 0.91502 0.96580 0.96776 0.93171 0.90992 0.90872 0.89745 0.91051 0.90093 0.91053 0.85168 0.85533 0.86140 0.85984 0.85098 0.90090 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 7.94 37.16 0.29 -2.52 16 2 C -0.09 -1.75 0.52 -154.51 -0.08 -1.83 16 3 C -0.16 -2.99 5.90 37.16 0.22 -2.77 16 4 C 0.04 0.92 3.93 -27.88 -0.11 0.81 16 5 C -0.51 -13.72 7.43 -34.44 -0.26 -13.98 16 6 H 0.06 1.55 5.91 -52.49 -0.31 1.24 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.05 0.88 5.20 -3.82 -0.02 0.86 16 14 N -0.51 -7.58 5.54 -230.44 -1.28 -8.86 16 15 C 0.01 0.12 5.74 -2.75 -0.02 0.11 16 16 C -0.15 -1.82 5.94 -25.37 -0.15 -1.97 16 17 C 0.07 0.91 3.07 -24.87 -0.08 0.84 16 18 H 0.09 1.01 5.43 -51.93 -0.28 0.72 16 19 O -0.30 -4.14 9.88 -19.43 -0.19 -4.33 16 20 C 0.14 1.70 6.68 -39.22 -0.26 1.44 16 21 C -0.16 -1.74 9.99 -39.43 -0.39 -2.13 16 22 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 23 C -0.17 -1.46 10.04 -39.56 -0.40 -1.86 16 24 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 25 C -0.21 -2.30 9.09 -39.43 -0.36 -2.66 16 26 C -0.01 -0.09 4.11 -1.89 -0.01 -0.10 16 27 H 0.05 0.87 4.84 -51.93 -0.25 0.62 16 28 H 0.07 1.49 6.23 -51.93 -0.32 1.16 16 29 H 0.04 0.77 7.64 -51.93 -0.40 0.37 16 30 H 0.06 1.20 6.88 -51.93 -0.36 0.84 16 31 H 0.05 0.99 6.40 -51.93 -0.33 0.66 16 32 H 0.07 1.07 1.96 -51.93 -0.10 0.97 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.07 1.26 7.78 -51.93 -0.40 0.86 16 37 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 38 H 0.08 1.28 4.04 -51.93 -0.21 1.07 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.04 7.75 -51.93 -0.40 0.64 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 46 H 0.13 1.29 5.67 -52.49 -0.30 0.99 16 47 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.13 1.97 1.96 -51.93 -0.10 1.86 16 LS Contribution 352.05 15.07 5.31 5.31 Total: -1.00 -29.46 352.05 -10.06 -39.52 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.11 Total: 4.31 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -2.51 Total: -26.59 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.54 Total: -34.72 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.19 Total: -4.33 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.46 -10.06 -39.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374258881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.950 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds