Wall clock time and date at job start Tue Mar 31 2020 09:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 C 1.53008 * 109.47174 * 119.99664 * 2 1 3 5 5 C 1.50699 * 109.46923 * 300.00294 * 4 2 1 6 6 H 1.07998 * 120.00292 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99894 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99889 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00140 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47103 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47064 * 119.99977 * 9 7 5 12 12 H 1.48497 * 109.47381 * 239.99758 * 9 7 5 13 13 C 1.52999 * 109.47410 * 239.99447 * 2 1 3 14 14 N 1.46907 * 109.47021 * 81.95673 * 13 2 1 15 15 C 1.47899 * 110.99670 * 77.21789 * 14 13 2 16 16 C 1.54000 * 107.05890 * 214.15632 * 15 14 13 17 17 C 1.54594 * 105.13784 * 1.22888 * 16 15 14 18 18 H 1.08997 * 110.72497 * 263.42189 * 17 16 15 19 19 O 1.42896 * 110.72361 * 140.31373 * 17 16 15 20 20 C 1.35903 * 117.00185 * 96.27107 * 19 17 16 21 21 C 1.38728 * 120.05844 * 184.64045 * 20 19 17 22 22 C 1.38146 * 119.94405 * 179.74306 * 21 20 19 23 23 C 1.38269 * 120.05223 * 0.50983 * 22 21 20 24 24 C 1.38256 * 120.11305 * 359.77011 * 23 22 21 25 25 C 1.38148 * 120.06002 * 359.97178 * 24 23 22 26 26 C 1.48533 * 110.99636 * 319.82496 * 14 13 2 27 27 H 1.09000 * 109.46931 * 39.03672 * 1 2 3 28 28 H 1.08994 * 109.47085 * 279.03490 * 1 2 3 29 29 H 1.09003 * 109.47201 * 159.03820 * 1 2 3 30 30 H 1.09001 * 109.47305 * 52.42998 * 3 2 1 31 31 H 1.08994 * 109.47423 * 172.43951 * 3 2 1 32 32 H 1.09003 * 109.46571 * 292.43534 * 3 2 1 33 33 H 1.09007 * 109.46875 * 60.00206 * 4 2 1 34 34 H 1.09000 * 109.47084 * 179.97438 * 4 2 1 35 35 H 0.96998 * 120.00203 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47496 * 201.95473 * 13 2 1 37 37 H 1.09002 * 109.47223 * 321.95914 * 13 2 1 38 38 H 1.08997 * 109.92152 * 333.51669 * 15 14 13 39 39 H 1.09006 * 109.91388 * 94.61209 * 15 14 13 40 40 H 1.08993 * 110.30524 * 120.14613 * 16 15 14 41 41 H 1.08998 * 110.30551 * 242.31827 * 16 15 14 42 42 H 1.07998 * 120.02605 * 359.97438 * 21 20 19 43 43 H 1.07998 * 119.97100 * 180.28154 * 22 21 20 44 44 H 1.08007 * 119.93910 * 179.74780 * 23 22 21 45 45 H 1.08006 * 119.97399 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.02920 * 179.97438 * 25 24 23 47 47 H 1.08997 * 110.67229 * 278.15403 * 26 14 13 48 48 H 1.09000 * 110.66864 * 41.29188 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0107 2.4797 6 1 0.9170 0.8675 2.3806 7 6 1.8711 -0.4814 3.7320 8 7 2.6273 -1.5507 3.8527 9 14 1.2490 0.3996 5.2571 10 1 0.4233 1.5658 4.8529 11 1 0.4243 -0.5336 6.0661 12 1 2.4042 0.8665 6.0650 13 6 2.0400 -0.7214 -1.2491 14 7 2.0206 0.2031 -2.3907 15 6 3.1612 1.1428 -2.3312 16 6 2.6721 2.4840 -2.9087 17 6 1.1859 2.2521 -3.2654 18 1 1.0768 2.0029 -4.3209 19 8 0.4015 3.3999 -2.9350 20 6 0.1482 4.2831 -3.9363 21 6 -0.5241 5.4661 -3.6659 22 6 -0.7756 6.3647 -4.6846 23 6 -0.3673 6.0809 -5.9747 24 6 0.2977 4.9000 -6.2479 25 6 0.5564 4.0005 -5.2318 26 6 0.7988 1.0475 -2.3709 27 1 -0.3633 0.7982 -0.6472 28 1 -0.3633 0.1614 1.0149 29 1 -0.3634 -0.9597 -0.3677 30 1 1.5704 1.9939 0.8145 31 1 3.1215 1.4455 0.1352 32 1 1.7913 1.9157 -0.9499 33 1 1.6767 -1.7489 1.2494 34 1 3.1300 -0.7216 1.2491 35 1 2.8616 -1.8820 4.7337 36 1 3.0598 -1.0665 -1.0785 37 1 1.3981 -1.5760 -1.4628 38 1 3.4780 1.2772 -1.2970 39 1 3.9898 0.7590 -2.9263 40 1 2.7634 3.2730 -2.1623 41 1 3.2402 2.7404 -3.8029 42 1 -0.8471 5.6861 -2.6591 43 1 -1.2949 7.2879 -4.4737 44 1 -0.5686 6.7829 -6.7705 45 1 0.6153 4.6804 -7.2566 46 1 1.0756 3.0780 -5.4458 47 1 -0.0481 0.5090 -2.7963 48 1 0.5758 1.3778 -1.3564 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374258881.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:31 Heat of formation + Delta-G solvation = 29.700559 kcal Electronic energy + Delta-G solvation = -25695.671969 eV Core-core repulsion = 22331.410875 eV Total energy + Delta-G solvation = -3364.261094 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20401 -40.70206 -38.34831 -36.61704 -34.42474 -32.24800 -31.70323 -30.88207 -30.01839 -29.03985 -27.93326 -27.02119 -24.69493 -23.87722 -23.32005 -21.82882 -21.45474 -19.91293 -19.32734 -18.36019 -17.40246 -17.16839 -16.70533 -16.52545 -16.16065 -15.78014 -15.64441 -15.44894 -15.27324 -14.76046 -14.37750 -14.31679 -13.92348 -13.83322 -13.44797 -13.33881 -13.10290 -12.85217 -12.76836 -12.56299 -12.54597 -12.46674 -12.38487 -12.17524 -12.00585 -11.86938 -11.78741 -11.59335 -11.34343 -11.26422 -11.06176 -10.67672 -10.54178 -9.91881 -9.11912 -9.08319 -8.16724 -6.24143 0.42733 0.52977 1.36450 1.37957 1.49619 2.11900 2.40493 2.87737 3.16365 3.21398 3.53215 3.63181 3.80710 3.95685 4.04727 4.08912 4.10079 4.18028 4.26106 4.37103 4.42503 4.50452 4.53952 4.57711 4.65239 4.75725 4.78396 4.82618 4.85796 4.94641 4.97015 5.02455 5.08142 5.10450 5.12814 5.21477 5.43161 5.44946 5.46293 5.52273 5.53136 5.55064 5.63960 5.74973 5.87815 5.88411 5.98032 6.03569 6.31396 6.52291 6.90532 7.43092 8.94838 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021783 B = 0.003290 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.094772 B = 8508.847342 C = 9315.273194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.154 4.154 4 C 0.044 3.956 5 C -0.514 4.514 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.935 5.935 9 Si 0.953 3.047 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.061 3.939 14 N -0.502 5.502 15 C 0.006 3.994 16 C -0.143 4.143 17 C 0.078 3.922 18 H 0.103 0.897 19 O -0.321 6.321 20 C 0.111 3.889 21 C -0.175 4.175 22 C -0.084 4.084 23 C -0.165 4.165 24 C -0.084 4.084 25 C -0.221 4.221 26 C -0.010 4.010 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.095 0.905 33 H -0.012 1.012 34 H -0.014 1.014 35 H 0.260 0.740 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.128 0.872 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.147 0.853 46 H 0.139 0.861 47 H 0.090 0.910 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 13.656 -21.510 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.210 4.210 4 C 0.007 3.993 5 C -0.552 4.552 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.779 3.221 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.208 1.208 13 C -0.068 4.068 14 N -0.225 5.225 15 C -0.121 4.121 16 C -0.181 4.181 17 C 0.022 3.978 18 H 0.121 0.879 19 O -0.235 6.235 20 C 0.066 3.934 21 C -0.194 4.194 22 C -0.102 4.102 23 C -0.183 4.183 24 C -0.102 4.102 25 C -0.240 4.240 26 C -0.137 4.137 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.113 0.887 33 H 0.006 0.994 34 H 0.004 0.996 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.146 0.854 43 H 0.168 0.832 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.108 0.892 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.275 13.219 -21.666 25.738 hybrid contribution 0.129 0.108 2.123 2.129 sum -4.146 13.327 -19.543 24.015 Atomic orbital electron populations 1.22415 0.94621 1.01492 1.01843 1.21032 0.96180 0.95763 0.95589 1.22766 0.99657 0.96262 1.02316 1.18981 0.93940 0.94156 0.92234 1.21618 1.30186 1.11805 0.91606 0.92057 1.25882 0.95716 0.95897 1.02451 1.70101 1.38744 1.24822 1.24005 0.85567 0.78166 0.78807 0.79565 1.18755 1.20694 1.20763 1.22396 1.01241 0.95521 0.87632 1.65045 1.01902 1.15705 1.39861 1.23468 0.95001 0.91405 1.02263 1.22843 0.95263 0.97568 1.02411 1.23461 0.89938 0.83669 1.00765 0.87911 1.86112 1.68632 1.33055 1.35670 1.19348 0.95996 0.90372 0.87674 1.20715 1.03976 0.93350 1.01340 1.21295 0.97727 0.98884 0.92252 1.21432 1.01077 0.98399 0.97399 1.21302 0.96238 0.93270 0.99391 1.21499 1.07303 1.02780 0.92397 1.24449 0.94572 0.92502 1.02152 0.90370 0.93638 0.93016 0.94292 0.93667 0.88747 0.99355 0.99583 0.93108 0.91877 0.90505 0.91489 0.89562 0.90878 0.88778 0.85437 0.83222 0.83488 0.83543 0.84385 0.89217 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 7.94 71.98 0.57 -4.87 16 2 C -0.08 -3.31 0.52 -52.18 -0.03 -3.34 16 3 C -0.15 -5.73 5.90 71.98 0.42 -5.31 16 4 C 0.04 2.29 3.93 29.85 0.12 2.41 16 5 C -0.51 -28.55 7.43 25.60 0.19 -28.36 16 6 H 0.06 3.32 5.91 -2.91 -0.02 3.30 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 8 N -0.94 -57.18 13.29 21.45 0.28 -56.89 16 9 Si 0.95 44.83 29.54 68.60 2.03 46.86 16 10 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.06 2.06 5.20 86.30 0.45 2.51 16 14 N -0.50 -14.30 5.54 -882.98 -4.89 -19.19 16 15 C 0.01 0.15 5.74 86.45 0.50 0.65 16 16 C -0.14 -3.24 5.94 31.47 0.19 -3.05 16 17 C 0.08 1.84 3.07 31.80 0.10 1.94 16 18 H 0.10 2.10 5.43 -2.39 -0.01 2.09 16 19 O -0.32 -8.42 9.88 -92.45 -0.91 -9.33 16 20 C 0.11 2.58 6.68 22.51 0.15 2.73 16 21 C -0.18 -3.69 9.99 22.37 0.22 -3.47 16 22 C -0.08 -1.35 10.04 22.26 0.22 -1.12 16 23 C -0.17 -2.36 10.04 22.28 0.22 -2.14 16 24 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 25 C -0.22 -4.26 9.09 22.37 0.20 -4.05 16 26 C -0.01 -0.27 4.11 86.65 0.36 0.08 16 27 H 0.08 2.51 4.84 -2.39 -0.01 2.50 16 28 H 0.04 1.91 6.23 -2.39 -0.01 1.89 16 29 H 0.05 1.79 7.64 -2.39 -0.02 1.78 16 30 H 0.04 1.58 6.88 -2.39 -0.02 1.56 16 31 H 0.04 1.73 6.40 -2.39 -0.02 1.72 16 32 H 0.09 3.00 1.96 -2.39 0.00 3.00 16 33 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 34 H -0.01 -0.80 8.12 -2.39 -0.02 -0.82 16 35 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.06 2.25 7.78 -2.39 -0.02 2.23 16 37 H 0.08 2.56 7.63 -2.39 -0.02 2.54 16 38 H 0.07 2.02 4.04 -2.39 -0.01 2.01 16 39 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.07 1.79 7.75 -2.39 -0.02 1.78 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 44 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 45 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 46 H 0.14 2.34 5.67 -2.91 -0.02 2.32 16 47 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.11 3.27 1.96 -2.39 0.00 3.26 16 Total: -1.00 -64.91 352.05 2.04 -62.87 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.96 Total: 21.84 kcal Atomic # 6 Polarization: -50.72 SS G_CDS: 4.57 Total: -46.15 kcal Atomic # 7 Polarization: -71.48 SS G_CDS: -4.60 Total: -76.08 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.91 Total: -9.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -64.91 2.04 -62.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374258881.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.567 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds