Wall clock time and date at job start Tue Mar 31 2020 08:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.53000 * 109.50098 * 305.09664 * 3 2 1 5 5 O 1.42900 * 109.47189 * 305.15058 * 4 3 2 6 6 C 1.53117 * 109.50104 * 185.02440 * 3 2 1 7 7 C 1.53117 * 109.15892 * 297.67005 * 6 3 2 8 8 C 1.53044 * 109.27957 * 302.34602 * 7 6 3 9 9 N 1.46852 * 109.51859 * 59.17926 * 8 7 6 10 10 C 1.46898 * 110.99464 * 174.16268 * 9 8 7 11 11 C 1.50701 * 109.47532 * 66.04614 * 10 9 8 12 12 C 1.38640 * 119.74881 * 269.72772 * 11 10 9 13 13 C 1.37617 * 120.24456 * 179.72054 * 12 11 10 14 14 C 1.40712 * 119.74797 * 0.52322 * 13 12 11 15 15 C 1.41388 * 120.24592 * 179.72840 * 14 13 12 16 16 H 1.08006 * 119.99951 * 205.11108 * 15 14 13 17 17 C 1.39942 * 120.00195 * 25.10925 * 15 14 13 18 18 N 1.30822 * 119.99687 * 15.24235 * 17 15 14 19 19 Si 1.86805 * 120.00237 * 195.23639 * 17 15 14 20 20 H 1.48505 * 109.46618 * 90.00537 * 19 17 15 21 21 H 1.48499 * 109.47252 * 209.99762 * 19 17 15 22 22 H 1.48490 * 109.47289 * 330.00640 * 19 17 15 23 23 C 1.40721 * 119.50830 * 359.74916 * 14 13 12 24 24 C 1.37618 * 119.74940 * 359.97438 * 23 14 13 25 25 C 1.46843 * 111.20009 * 298.25519 * 9 8 7 26 26 H 1.09003 * 109.46998 * 65.87448 * 1 2 3 27 27 H 1.08995 * 109.47803 * 185.87873 * 1 2 3 28 28 H 1.09003 * 109.47065 * 305.87801 * 1 2 3 29 29 H 1.08994 * 109.46828 * 239.99147 * 2 1 3 30 30 H 1.08999 * 109.46565 * 119.99867 * 2 1 3 31 31 H 1.09005 * 109.47020 * 65.14944 * 4 3 2 32 32 H 1.08994 * 109.47514 * 185.14876 * 4 3 2 33 33 H 0.96700 * 113.99782 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.52388 * 177.76599 * 6 3 2 35 35 H 1.08994 * 109.52853 * 57.57409 * 6 3 2 36 36 H 1.09003 * 109.50585 * 182.40989 * 7 6 3 37 37 H 1.08995 * 109.50764 * 62.28748 * 7 6 3 38 38 H 1.08993 * 109.46243 * 299.16509 * 8 7 6 39 39 H 1.09004 * 109.46178 * 179.19459 * 8 7 6 40 40 H 1.09002 * 109.47096 * 306.04488 * 10 9 8 41 41 H 1.09004 * 109.47047 * 186.04607 * 10 9 8 42 42 H 1.08001 * 119.87377 * 359.97362 * 12 11 10 43 43 H 1.07995 * 120.12378 * 180.28014 * 13 12 11 44 44 H 0.97005 * 119.99888 * 179.97438 * 18 17 15 45 45 H 1.08005 * 120.12664 * 179.97438 * 23 14 13 46 46 H 1.07993 * 119.87901 * 180.02562 * 24 23 14 47 47 H 1.08999 * 109.46261 * 181.75816 * 25 9 8 48 48 H 1.08997 * 109.46742 * 301.73318 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4285 2.2005 -1.1800 5 8 1.7038 1.4963 -2.3926 6 6 3.5660 1.4451 -0.1264 7 6 4.1721 0.7372 1.0885 8 6 3.7105 1.4419 2.3662 9 7 2.2442 1.4119 2.4408 10 6 1.7710 1.9564 3.7204 11 6 2.1039 3.4243 3.7957 12 6 3.3130 3.8285 4.3403 13 6 3.6299 5.1659 4.4088 14 6 2.7166 6.1251 3.9335 15 6 3.0289 7.5022 4.0040 16 1 2.2359 8.2349 4.0349 17 6 4.3654 7.9160 4.0338 18 7 5.3161 7.0813 3.7008 19 14 4.7919 9.6602 4.5490 20 1 5.0047 9.7043 6.0180 21 1 6.0324 10.0917 3.8561 22 1 3.6778 10.5710 4.1827 23 6 1.4898 5.7034 3.3880 24 6 1.1964 4.3604 3.3243 25 6 1.6402 2.1267 1.3092 26 1 -0.3633 0.4201 -0.9379 27 1 -0.3634 -1.0222 0.1052 28 1 -0.3633 0.6023 0.8327 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 0.3500 2.2786 -1.0420 32 1 1.8612 3.1994 -1.2338 33 1 1.3445 1.9204 -3.1839 34 1 3.9264 2.4730 -0.1664 35 1 3.8571 0.9205 -1.0363 36 1 5.2597 0.7734 1.0257 37 1 3.8423 -0.3015 1.1065 38 1 4.0524 2.4768 2.3540 39 1 4.1288 0.9316 3.2338 40 1 2.2586 1.4308 4.5415 41 1 0.6915 1.8244 3.7945 42 1 4.0106 3.0907 4.7084 43 1 4.5743 5.4783 4.8293 44 1 6.2425 7.3683 3.7211 45 1 0.7812 6.4311 3.0207 46 1 0.2558 4.0345 2.9057 47 1 0.5549 2.1138 1.4090 48 1 1.9918 3.1584 1.3018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426455297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:43 Heat of formation + Delta-G solvation = -48.765237 kcal Electronic energy + Delta-G solvation = -26077.343172 eV Core-core repulsion = 22709.679546 eV Total energy + Delta-G solvation = -3367.663626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.90314 -37.81092 -36.42966 -34.52580 -33.39102 -32.28605 -29.91692 -29.65345 -29.16555 -26.79872 -25.61647 -24.43992 -23.50007 -22.18747 -21.26237 -20.56112 -19.75510 -17.84126 -17.33414 -17.22300 -15.71648 -15.37235 -15.13809 -14.84164 -14.51797 -14.25056 -13.95543 -13.82388 -13.56172 -13.28079 -12.90990 -12.74350 -12.50638 -12.30887 -11.98752 -11.94022 -11.70212 -11.60691 -11.46780 -11.21150 -11.05352 -10.88969 -10.78095 -10.59583 -10.50818 -10.35355 -10.13114 -9.93463 -9.90284 -9.73648 -9.66872 -9.42285 -9.18995 -7.74346 -7.48783 -7.31978 -6.78304 -4.40377 2.70597 3.01406 3.04222 3.07165 3.14843 3.89415 4.13385 4.54815 4.72446 4.91351 5.01686 5.08372 5.41157 5.45278 5.53970 5.60136 5.64610 5.66021 5.69856 5.75429 5.83610 5.92255 6.01961 6.05158 6.12707 6.16949 6.22800 6.26580 6.32664 6.34044 6.38642 6.40836 6.43132 6.49433 6.60653 6.71411 6.76027 6.89983 7.03029 7.23172 7.31652 7.53304 7.57276 7.60817 7.67406 7.82568 8.01413 8.09016 8.26067 8.60452 8.85667 8.93294 10.15183 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003845 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.797200 B = 7281.348170 C = 7516.273200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.050 4.050 4 C 0.084 3.916 5 O -0.568 6.568 6 C -0.105 4.105 7 C -0.116 4.116 8 C 0.052 3.948 9 N -0.525 5.525 10 C 0.114 3.886 11 C -0.247 4.247 12 C -0.090 4.090 13 C -0.164 4.164 14 C 0.112 3.888 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.795 5.795 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.228 4.228 24 C -0.080 4.080 25 C 0.067 3.933 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.373 0.627 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.280 0.720 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.068 0.932 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.048 -9.735 -6.697 12.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.135 4.135 3 C -0.051 4.051 4 C 0.006 3.994 5 O -0.372 6.372 6 C -0.143 4.143 7 C -0.154 4.154 8 C -0.076 4.076 9 N -0.248 5.248 10 C -0.013 4.013 11 C -0.250 4.250 12 C -0.109 4.109 13 C -0.184 4.184 14 C 0.109 3.891 15 C -0.492 4.492 16 H 0.094 0.906 17 C -0.142 4.142 18 N -0.421 5.421 19 Si 0.733 3.267 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.247 4.247 24 C -0.099 4.099 25 C -0.061 4.061 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.218 0.782 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.091 0.909 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.086 0.914 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.634 -10.664 -6.336 12.926 hybrid contribution 0.272 2.262 -0.146 2.283 sum -3.362 -8.402 -6.482 11.131 Atomic orbital electron populations 1.21813 0.96780 1.00893 1.01114 1.21359 0.95056 0.95264 1.01826 1.20587 0.95506 0.96223 0.92736 1.22224 0.98451 0.94231 0.84532 1.86468 1.80936 1.53371 1.16471 1.21553 0.94091 1.00621 0.98020 1.21616 0.99248 0.99964 0.94535 1.22066 0.88391 1.00001 0.97149 1.62386 1.06764 1.53417 1.02207 1.20830 0.99133 0.91012 0.90310 1.19683 0.97704 0.94529 1.13038 1.20544 0.95125 0.95593 0.99640 1.21359 1.01363 0.91509 1.04152 1.17624 0.90578 0.93415 0.87472 1.19615 0.92173 0.92705 1.44748 0.90565 1.25900 0.96246 0.99652 0.92414 1.69811 1.01505 1.36704 1.34059 0.86307 0.78636 0.82131 0.79626 1.19276 1.20289 1.18649 1.20973 1.00158 0.94202 1.09405 1.20351 0.96737 0.93310 0.99477 1.21978 0.98843 0.96224 0.89081 0.93399 0.93563 0.92611 0.92503 0.90680 0.93587 0.93847 0.78154 0.92433 0.91749 0.92191 0.91522 0.93367 0.91690 0.91734 0.91841 0.89786 0.86376 0.90922 0.89268 0.89845 0.91381 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.11 37.16 0.34 -1.43 16 2 C -0.10 -1.27 4.19 -26.73 -0.11 -1.38 16 3 C -0.05 -0.69 0.38 -154.43 -0.06 -0.75 16 4 C 0.08 1.06 5.26 37.16 0.20 1.25 16 5 O -0.57 -6.61 12.47 -35.23 -0.44 -7.05 16 6 C -0.11 -1.52 4.66 -26.61 -0.12 -1.64 16 7 C -0.12 -1.63 5.74 -26.65 -0.15 -1.78 16 8 C 0.05 0.84 4.83 -3.83 -0.02 0.82 16 9 N -0.53 -8.37 4.06 -236.11 -0.96 -9.33 16 10 C 0.11 1.95 5.55 -4.98 -0.03 1.93 16 11 C -0.25 -5.09 4.06 -104.33 -0.42 -5.51 16 12 C -0.09 -2.03 8.09 -39.66 -0.32 -2.35 16 13 C -0.16 -4.19 8.69 -38.87 -0.34 -4.53 16 14 C 0.11 2.93 5.58 -106.83 -0.60 2.34 16 15 C -0.46 -12.20 9.06 -37.75 -0.34 -12.54 16 16 H 0.08 1.94 7.89 -52.48 -0.41 1.53 16 17 C 0.08 1.88 5.19 -17.34 -0.09 1.79 16 18 N -0.80 -20.41 10.84 55.55 0.60 -19.80 16 19 Si 0.91 18.60 29.59 -169.99 -5.03 13.57 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 23 C -0.23 -5.49 9.80 -38.87 -0.38 -5.87 16 24 C -0.08 -1.71 7.97 -39.66 -0.32 -2.03 16 25 C 0.07 1.05 3.03 -3.84 -0.01 1.04 16 26 H 0.05 0.54 6.82 -51.93 -0.35 0.19 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.69 6.31 -51.93 -0.33 0.36 16 29 H 0.06 0.76 7.73 -51.93 -0.40 0.36 16 30 H 0.07 1.04 6.14 -51.93 -0.32 0.72 16 31 H 0.05 0.54 6.80 -51.93 -0.35 0.19 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.37 2.71 9.12 45.56 0.42 3.12 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.89 6.70 -51.93 -0.35 0.55 16 38 H 0.05 0.93 6.56 -51.93 -0.34 0.59 16 39 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 40 H 0.06 1.07 8.00 -51.93 -0.42 0.65 16 41 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 42 H 0.08 1.75 8.04 -52.49 -0.42 1.32 16 43 H 0.12 3.15 6.11 -52.49 -0.32 2.83 16 44 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 45 H 0.09 2.05 8.06 -52.48 -0.42 1.63 16 46 H 0.08 1.60 8.01 -52.49 -0.42 1.18 16 47 H 0.07 1.04 6.40 -51.93 -0.33 0.71 16 48 H 0.05 0.92 6.46 -51.93 -0.34 0.59 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -27.06 359.52 -10.37 -37.43 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -7.19 Total: 10.42 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -2.78 Total: -30.65 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: -0.36 Total: -29.13 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.44 Total: -7.05 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.06 -10.37 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.336 kcal (2) G-P(sol) polarization free energy of solvation -27.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds