Wall clock time and date at job start Tue Mar 31 2020 08:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47187 * 2 1 4 4 C 1.53000 * 109.50098 * 305.09664 * 3 2 1 5 5 O 1.42900 * 109.47189 * 305.15058 * 4 3 2 6 6 C 1.53117 * 109.50104 * 185.02440 * 3 2 1 7 7 C 1.53117 * 109.15892 * 297.67005 * 6 3 2 8 8 C 1.53044 * 109.27957 * 302.34602 * 7 6 3 9 9 N 1.46852 * 109.51859 * 59.17926 * 8 7 6 10 10 C 1.46898 * 110.99464 * 174.16268 * 9 8 7 11 11 C 1.50701 * 109.47532 * 66.04614 * 10 9 8 12 12 C 1.38640 * 119.74881 * 269.72772 * 11 10 9 13 13 C 1.37617 * 120.24456 * 179.72054 * 12 11 10 14 14 C 1.40712 * 119.74797 * 0.52322 * 13 12 11 15 15 C 1.41388 * 120.24592 * 179.72840 * 14 13 12 16 16 H 1.08006 * 119.99951 * 205.11108 * 15 14 13 17 17 C 1.39942 * 120.00195 * 25.10925 * 15 14 13 18 18 N 1.30822 * 119.99687 * 15.24235 * 17 15 14 19 19 Si 1.86805 * 120.00237 * 195.23639 * 17 15 14 20 20 H 1.48505 * 109.46618 * 90.00537 * 19 17 15 21 21 H 1.48499 * 109.47252 * 209.99762 * 19 17 15 22 22 H 1.48490 * 109.47289 * 330.00640 * 19 17 15 23 23 C 1.40721 * 119.50830 * 359.74916 * 14 13 12 24 24 C 1.37618 * 119.74940 * 359.97438 * 23 14 13 25 25 C 1.46843 * 111.20009 * 298.25519 * 9 8 7 26 26 H 1.09003 * 109.46998 * 65.87448 * 1 2 3 27 27 H 1.08995 * 109.47803 * 185.87873 * 1 2 3 28 28 H 1.09003 * 109.47065 * 305.87801 * 1 2 3 29 29 H 1.08994 * 109.46828 * 239.99147 * 2 1 3 30 30 H 1.08999 * 109.46565 * 119.99867 * 2 1 3 31 31 H 1.09005 * 109.47020 * 65.14944 * 4 3 2 32 32 H 1.08994 * 109.47514 * 185.14876 * 4 3 2 33 33 H 0.96700 * 113.99782 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.52388 * 177.76599 * 6 3 2 35 35 H 1.08994 * 109.52853 * 57.57409 * 6 3 2 36 36 H 1.09003 * 109.50585 * 182.40989 * 7 6 3 37 37 H 1.08995 * 109.50764 * 62.28748 * 7 6 3 38 38 H 1.08993 * 109.46243 * 299.16509 * 8 7 6 39 39 H 1.09004 * 109.46178 * 179.19459 * 8 7 6 40 40 H 1.09002 * 109.47096 * 306.04488 * 10 9 8 41 41 H 1.09004 * 109.47047 * 186.04607 * 10 9 8 42 42 H 1.08001 * 119.87377 * 359.97362 * 12 11 10 43 43 H 1.07995 * 120.12378 * 180.28014 * 13 12 11 44 44 H 0.97005 * 119.99888 * 179.97438 * 18 17 15 45 45 H 1.08005 * 120.12664 * 179.97438 * 23 14 13 46 46 H 1.07993 * 119.87901 * 180.02562 * 24 23 14 47 47 H 1.08999 * 109.46261 * 181.75816 * 25 9 8 48 48 H 1.08997 * 109.46742 * 301.73318 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4285 2.2005 -1.1800 5 8 1.7038 1.4963 -2.3926 6 6 3.5660 1.4451 -0.1264 7 6 4.1721 0.7372 1.0885 8 6 3.7105 1.4419 2.3662 9 7 2.2442 1.4119 2.4408 10 6 1.7710 1.9564 3.7204 11 6 2.1039 3.4243 3.7957 12 6 3.3130 3.8285 4.3403 13 6 3.6299 5.1659 4.4088 14 6 2.7166 6.1251 3.9335 15 6 3.0289 7.5022 4.0040 16 1 2.2359 8.2349 4.0349 17 6 4.3654 7.9160 4.0338 18 7 5.3161 7.0813 3.7008 19 14 4.7919 9.6602 4.5490 20 1 5.0047 9.7043 6.0180 21 1 6.0324 10.0917 3.8561 22 1 3.6778 10.5710 4.1827 23 6 1.4898 5.7034 3.3880 24 6 1.1964 4.3604 3.3243 25 6 1.6402 2.1267 1.3092 26 1 -0.3633 0.4201 -0.9379 27 1 -0.3634 -1.0222 0.1052 28 1 -0.3633 0.6023 0.8327 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 0.3500 2.2786 -1.0420 32 1 1.8612 3.1994 -1.2338 33 1 1.3445 1.9204 -3.1839 34 1 3.9264 2.4730 -0.1664 35 1 3.8571 0.9205 -1.0363 36 1 5.2597 0.7734 1.0257 37 1 3.8423 -0.3015 1.1065 38 1 4.0524 2.4768 2.3540 39 1 4.1288 0.9316 3.2338 40 1 2.2586 1.4308 4.5415 41 1 0.6915 1.8244 3.7945 42 1 4.0106 3.0907 4.7084 43 1 4.5743 5.4783 4.8293 44 1 6.2425 7.3683 3.7211 45 1 0.7812 6.4311 3.0207 46 1 0.2558 4.0345 2.9057 47 1 0.5549 2.1138 1.4090 48 1 1.9918 3.1584 1.3018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426455297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:42 Heat of formation + Delta-G solvation = -64.158903 kcal Electronic energy + Delta-G solvation = -26078.010691 eV Core-core repulsion = 22709.679546 eV Total energy + Delta-G solvation = -3368.331145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.16756 -39.43013 -37.64899 -35.98378 -34.91605 -33.55393 -31.65893 -31.17186 -30.55740 -28.43076 -26.73825 -26.06196 -24.61322 -23.53076 -22.95726 -22.08674 -21.34856 -19.29497 -18.95486 -18.19523 -17.23137 -16.92144 -16.32884 -16.15250 -15.85525 -15.79440 -15.37907 -15.28797 -14.98067 -14.69282 -14.37427 -13.93688 -13.87351 -13.77812 -13.47138 -13.41529 -13.03135 -12.95276 -12.78730 -12.73060 -12.57712 -12.49710 -12.19668 -12.04209 -11.88955 -11.61667 -11.56336 -11.26383 -11.25524 -11.07221 -11.00338 -10.95866 -10.72363 -9.36867 -9.24810 -9.09087 -8.64134 -6.36774 0.92954 1.13096 1.34512 1.47413 1.48543 2.17688 2.68280 3.03752 3.54980 3.71033 3.81146 3.89780 3.98842 4.23930 4.29560 4.37540 4.40793 4.46715 4.49871 4.55396 4.58874 4.62575 4.65688 4.73755 4.81449 4.90319 4.92605 4.98706 5.00951 5.04082 5.06525 5.12908 5.15427 5.21308 5.31779 5.35396 5.37415 5.45589 5.48916 5.59723 5.68450 5.69816 5.94471 6.08677 6.12887 6.23902 6.34218 6.38197 6.69596 6.92682 6.93846 7.02471 8.31501 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019348 B = 0.003845 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.797200 B = 7281.348170 C = 7516.273200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.049 4.049 4 C 0.088 3.912 5 O -0.576 6.576 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.054 3.946 9 N -0.512 5.512 10 C 0.116 3.884 11 C -0.229 4.229 12 C -0.091 4.091 13 C -0.190 4.190 14 C 0.079 3.921 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.034 3.966 18 N -0.829 5.829 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.244 4.244 24 C -0.077 4.077 25 C 0.073 3.927 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.393 0.607 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.011 0.989 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.286 0.714 45 H 0.092 0.908 46 H 0.113 0.887 47 H 0.079 0.921 48 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.095 -11.455 -7.256 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.049 4.049 4 C 0.010 3.990 5 O -0.384 6.384 6 C -0.141 4.141 7 C -0.147 4.147 8 C -0.074 4.074 9 N -0.233 5.233 10 C -0.011 4.011 11 C -0.231 4.231 12 C -0.110 4.110 13 C -0.209 4.209 14 C 0.077 3.923 15 C -0.533 4.533 16 H 0.090 0.910 17 C -0.180 4.180 18 N -0.455 5.455 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.264 4.264 24 C -0.096 4.096 25 C -0.056 4.056 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.242 0.758 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.029 0.971 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.097 0.903 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.097 0.903 48 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -4.696 -12.398 -6.917 14.953 hybrid contribution 0.546 2.643 -0.049 2.699 sum -4.149 -9.755 -6.965 12.684 Atomic orbital electron populations 1.21778 0.95652 1.01616 1.01207 1.21269 0.95964 0.93975 1.01468 1.20562 0.95040 0.97053 0.92286 1.22085 0.98890 0.93335 0.84716 1.86413 1.81350 1.53601 1.16987 1.21526 0.94788 0.99263 0.98543 1.21586 0.99780 1.00276 0.93107 1.22071 0.88440 0.98135 0.98798 1.62448 1.06603 1.52487 1.01798 1.20928 1.00569 0.88237 0.91390 1.20118 0.96231 0.96747 1.10021 1.20756 0.96208 0.94729 0.99335 1.21302 1.00949 0.92913 1.05779 1.17952 0.91804 0.93956 0.88626 1.19845 0.93143 0.93017 1.47278 0.90994 1.26729 0.95567 1.03937 0.91728 1.69877 1.02004 1.38774 1.34876 0.85216 0.78549 0.76713 0.79311 1.18659 1.19230 1.18263 1.21171 0.99736 0.95716 1.09773 1.20648 0.97954 0.92344 0.98610 1.21944 0.99251 0.94357 0.90030 0.92896 0.92449 0.93010 0.92573 0.91217 0.92325 0.95216 0.75846 0.94862 0.91093 0.91411 0.90016 0.97112 0.90708 0.90471 0.89925 0.88241 0.88434 0.90332 0.89007 0.86946 0.90307 0.96913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.11 71.98 0.66 -2.31 16 2 C -0.09 -2.07 4.19 30.59 0.13 -1.94 16 3 C -0.05 -1.27 0.38 -52.13 -0.02 -1.29 16 4 C 0.09 2.08 5.26 71.98 0.38 2.46 16 5 O -0.58 -12.14 12.47 -148.98 -1.86 -14.00 16 6 C -0.10 -2.90 4.66 30.67 0.14 -2.75 16 7 C -0.11 -2.92 5.74 30.65 0.18 -2.74 16 8 C 0.05 1.67 4.83 86.33 0.42 2.09 16 9 N -0.51 -15.23 4.06 -900.92 -3.65 -18.89 16 10 C 0.12 3.68 5.55 85.56 0.47 4.15 16 11 C -0.23 -9.24 4.06 -19.67 -0.08 -9.32 16 12 C -0.09 -4.17 8.09 22.22 0.18 -3.99 16 13 C -0.19 -10.12 8.69 22.73 0.20 -9.92 16 14 C 0.08 4.33 5.58 -21.29 -0.12 4.21 16 15 C -0.50 -27.79 9.06 23.46 0.21 -27.58 16 16 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 17 C 0.03 1.78 5.19 85.26 0.44 2.22 16 18 N -0.83 -44.36 10.84 21.83 0.24 -44.12 16 19 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 20 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 23 C -0.24 -12.07 9.80 22.73 0.22 -11.84 16 24 C -0.08 -3.26 7.97 22.22 0.18 -3.08 16 25 C 0.07 2.17 3.03 86.33 0.26 2.43 16 26 H 0.05 1.03 6.82 -2.39 -0.02 1.01 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.10 6.31 -2.39 -0.02 1.08 16 29 H 0.06 1.34 7.73 -2.39 -0.02 1.32 16 30 H 0.07 1.70 6.14 -2.39 -0.01 1.69 16 31 H 0.06 1.24 6.80 -2.38 -0.02 1.22 16 32 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.39 4.78 9.12 -74.06 -0.68 4.11 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.89 7.90 -2.39 -0.02 1.87 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 1.97 6.70 -2.39 -0.02 1.95 16 38 H 0.01 0.41 6.56 -2.39 -0.02 0.40 16 39 H 0.07 2.17 8.06 -2.38 -0.02 2.15 16 40 H 0.08 2.31 8.00 -2.39 -0.02 2.29 16 41 H 0.08 2.37 8.08 -2.38 -0.02 2.35 16 42 H 0.10 4.14 8.04 -2.91 -0.02 4.11 16 43 H 0.10 5.52 6.11 -2.91 -0.02 5.50 16 44 H 0.29 13.89 8.30 -92.70 -0.77 13.12 16 45 H 0.09 4.35 8.06 -2.91 -0.02 4.32 16 46 H 0.11 4.07 8.01 -2.91 -0.02 4.05 16 47 H 0.08 2.19 6.40 -2.39 -0.02 2.18 16 48 H 0.01 0.48 6.46 -2.39 -0.02 0.46 16 Total: -1.00 -60.59 359.52 0.87 -59.72 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.27 Total: 35.43 kcal Atomic # 6 Polarization: -63.06 SS G_CDS: 3.85 Total: -59.21 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -3.42 Total: -63.01 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -1.86 Total: -14.00 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -60.59 0.87 -59.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426455297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.436 kcal (2) G-P(sol) polarization free energy of solvation -60.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds