Wall clock time and date at job start Tue Mar 31 2020 08:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 C 1.53004 * 109.46761 * 240.00277 * 2 1 3 5 5 C 1.50699 * 109.47181 * 120.00663 * 2 1 3 6 6 C 1.38238 * 119.99939 * 59.99332 * 5 2 1 7 7 C 1.38236 * 119.99608 * 180.02562 * 6 5 2 8 8 C 1.38241 * 120.00092 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99728 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47401 * 90.00020 * 9 8 7 11 11 N 1.46897 * 109.47109 * 180.02562 * 10 9 8 12 12 C 1.47479 * 110.99965 * 169.99973 * 11 10 9 13 13 C 1.53517 * 87.99753 * 138.66774 * 12 11 10 14 14 O 1.42906 * 114.16678 * 87.65378 * 13 12 11 15 15 C 1.50698 * 114.17065 * 220.35504 * 13 12 11 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99831 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00191 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99974 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47158 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47414 * 119.99897 * 19 17 15 22 22 H 1.48501 * 109.47275 * 239.99918 * 19 17 15 23 23 C 1.47487 * 110.99585 * 265.96938 * 11 10 9 24 24 C 1.38229 * 119.99792 * 0.25070 * 8 7 6 25 25 C 1.38234 * 119.99571 * 240.02497 * 5 2 1 26 26 H 1.08997 * 109.47465 * 299.99678 * 1 2 3 27 27 H 1.09007 * 109.47079 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46972 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47522 * 300.00239 * 3 2 1 31 31 H 1.09007 * 109.46523 * 60.00404 * 3 2 1 32 32 H 1.08993 * 109.47524 * 299.99608 * 4 2 1 33 33 H 1.09003 * 109.47260 * 60.00837 * 4 2 1 34 34 H 1.09005 * 109.46490 * 179.97438 * 4 2 1 35 35 H 1.07991 * 119.99965 * 0.02562 * 6 5 2 36 36 H 1.08001 * 119.99495 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.46944 * 329.99411 * 9 8 7 38 38 H 1.08996 * 109.46710 * 209.99935 * 9 8 7 39 39 H 1.08993 * 109.47213 * 59.99403 * 10 9 8 40 40 H 1.09000 * 109.46643 * 299.99814 * 10 9 8 41 41 H 1.09002 * 113.47562 * 253.46722 * 12 11 10 42 42 H 1.09003 * 113.47677 * 23.87325 * 12 11 10 43 43 H 0.96696 * 113.99578 * 180.02562 * 14 13 12 44 44 H 0.96998 * 120.00131 * 180.02562 * 18 17 15 45 45 H 1.09004 * 113.47787 * 336.06095 * 23 11 10 46 46 H 1.09001 * 113.47615 * 106.47267 * 23 11 10 47 47 H 1.08010 * 119.99873 * 179.72843 * 24 8 7 48 48 H 1.07993 * 120.00420 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6983 -2.0340 1.4490 7 6 2.1587 -2.6856 2.5779 8 6 2.9527 -2.0135 3.4884 9 6 3.4541 -2.7237 4.7194 10 6 4.8021 -3.3805 4.4158 11 7 5.2905 -4.0733 5.6155 12 6 6.4614 -4.9131 5.3011 13 6 7.0918 -4.4321 6.6155 14 8 6.7405 -5.2192 7.7554 15 6 8.5674 -4.1407 6.5218 16 1 9.0860 -4.2759 5.5842 17 6 9.2553 -3.7014 7.6330 18 7 8.6238 -3.5371 8.7749 19 14 11.0842 -3.3395 7.5166 20 1 11.5538 -3.6026 6.1326 21 1 11.3301 -1.9160 7.8610 22 1 11.8229 -4.2126 8.4639 23 6 6.1924 -3.2060 6.3962 24 6 3.2819 -0.6885 3.2725 25 6 2.8266 -0.0386 2.1406 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 1.6767 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.0777 -2.5588 0.7380 36 1 1.8973 -3.7194 2.7490 37 1 2.7358 -3.4882 5.0156 38 1 3.5745 -2.0049 5.5298 39 1 5.5203 -2.6160 4.1195 40 1 4.6816 -4.0994 3.6053 41 1 6.2400 -5.9804 5.2906 42 1 7.0043 -4.5866 4.4140 43 1 7.1386 -4.9138 8.5820 44 1 9.1077 -3.2277 9.5566 45 1 6.6642 -2.4233 5.8021 46 1 5.7428 -2.8257 7.3134 47 1 3.8987 -0.1621 3.9861 48 1 3.0875 0.9953 1.9698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428288273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:23 Heat of formation + Delta-G solvation = -10.059213 kcal Electronic energy + Delta-G solvation = -24395.833365 eV Core-core repulsion = 21029.848158 eV Total energy + Delta-G solvation = -3365.985207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.03998 -39.09701 -36.87912 -34.51110 -32.51670 -32.01772 -31.11401 -29.00428 -27.60598 -27.50525 -26.61718 -24.88854 -24.44498 -22.34578 -22.10105 -20.72924 -19.28054 -18.60194 -17.23110 -16.60340 -15.57697 -15.20972 -15.10471 -14.74096 -14.52243 -14.40794 -14.12778 -13.93796 -13.79958 -13.47096 -13.36969 -12.91488 -12.77960 -12.30713 -12.18293 -12.03982 -11.95155 -11.84958 -11.59990 -11.49913 -11.38017 -11.26460 -11.11041 -10.99901 -10.80409 -10.64887 -10.48309 -10.44834 -10.20893 -9.88260 -9.24615 -8.87796 -8.64765 -8.44429 -8.16545 -7.85991 -6.26834 -4.36354 1.37145 1.44219 3.18242 3.27087 3.31079 3.75855 4.25015 4.38552 4.51877 4.74297 4.77523 4.95783 4.96800 5.02960 5.06458 5.24129 5.28730 5.34674 5.38253 5.48576 5.49210 5.55926 5.60536 5.62804 5.66197 5.75752 5.80193 5.90457 5.95180 6.00327 6.00725 6.04221 6.09413 6.15852 6.17622 6.31825 6.43771 6.48949 6.52546 6.61333 6.71843 6.77866 7.05404 7.06524 7.20928 7.37456 7.77131 7.97043 8.06276 8.66204 9.33791 9.69994 10.79193 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.002561 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.843485 B =10930.125311 C =11463.106446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.075 4.075 9 C -0.072 4.072 10 C 0.027 3.973 11 N -0.473 5.473 12 C 0.004 3.996 13 C 0.247 3.753 14 O -0.570 6.570 15 C -0.533 4.533 16 H 0.066 0.934 17 C 0.070 3.930 18 N -0.898 5.898 19 Si 0.904 3.096 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.281 1.281 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.120 4.120 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.390 0.610 44 H 0.271 0.729 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.120 0.880 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 8.114 -15.911 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.195 4.195 5 C -0.082 4.082 6 C -0.133 4.133 7 C -0.133 4.133 8 C -0.075 4.075 9 C -0.109 4.109 10 C -0.102 4.102 11 N -0.195 5.195 12 C -0.125 4.125 13 C 0.205 3.795 14 O -0.383 6.383 15 C -0.571 4.571 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.731 3.269 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.206 1.206 23 C -0.151 4.151 24 C -0.133 4.133 25 C -0.138 4.138 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.245 0.755 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.138 0.862 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.768 7.554 -15.876 22.961 hybrid contribution 1.912 1.051 -0.080 2.183 sum -12.856 8.605 -15.956 22.225 Atomic orbital electron populations 1.21883 0.93865 1.02003 1.01716 1.19475 0.95555 0.94985 0.92867 1.21960 1.01294 0.95053 1.01796 1.21889 1.01350 1.00178 0.96118 1.19727 0.98411 0.94172 0.95894 1.20898 1.00539 0.94293 0.97573 1.21052 0.98181 0.99783 0.94298 1.20024 0.96793 0.94069 0.96652 1.20485 0.97204 0.99228 0.94020 1.22598 0.95568 0.97359 0.94715 1.68857 1.23841 1.13515 1.13307 1.24038 0.90893 0.98584 0.98965 1.19389 0.90775 0.85949 0.83400 1.86029 1.75249 1.56892 1.20086 1.21625 0.93818 1.44713 0.96956 0.91544 1.25073 0.99183 0.93904 0.95050 1.69305 1.36606 1.46969 1.01028 0.86349 0.84159 0.77989 0.78398 1.19585 1.20756 1.20635 1.24768 0.94240 0.98420 0.97639 1.21110 0.99991 0.94510 0.97683 1.21132 0.98324 1.00015 0.94304 0.92522 0.92526 0.92467 0.92218 0.92524 0.92277 0.92450 0.92522 0.92453 0.86530 0.86153 0.90557 0.91099 0.94237 0.92010 0.91165 0.91959 0.75453 0.91888 0.92393 0.91433 0.86157 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 3 C -0.14 -1.09 7.13 37.16 0.27 -0.82 16 4 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 5 C -0.08 -0.88 4.76 -104.62 -0.50 -1.37 16 6 C -0.12 -1.27 8.71 -39.58 -0.34 -1.61 16 7 C -0.12 -1.42 9.70 -39.58 -0.38 -1.81 16 8 C -0.07 -1.02 5.13 -104.62 -0.54 -1.55 16 9 C -0.07 -1.09 5.67 -27.88 -0.16 -1.25 16 10 C 0.03 0.47 4.80 -3.83 -0.02 0.45 16 11 N -0.47 -10.05 6.33 -244.40 -1.55 -11.59 16 12 C 0.00 0.09 7.09 -7.54 -0.05 0.04 16 13 C 0.25 6.34 1.57 -91.18 -0.14 6.20 16 14 O -0.57 -15.72 13.54 -35.23 -0.48 -16.19 16 15 C -0.53 -14.32 8.69 -34.44 -0.30 -14.62 16 16 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.07 1.84 5.40 -17.82 -0.10 1.75 16 18 N -0.90 -24.21 11.02 55.43 0.61 -23.60 16 19 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 C -0.02 -0.50 7.13 -7.47 -0.05 -0.55 16 24 C -0.11 -1.48 9.70 -39.58 -0.38 -1.86 16 25 C -0.12 -1.37 8.98 -39.58 -0.36 -1.72 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 29 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 7.51 -51.93 -0.39 0.05 16 32 H 0.06 0.44 7.39 -51.93 -0.38 0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.12 1.07 7.10 -52.49 -0.37 0.70 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.08 1.15 8.09 -51.93 -0.42 0.73 16 38 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.04 0.70 7.30 -51.93 -0.38 0.33 16 40 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 41 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 42 H 0.06 1.32 7.87 -51.93 -0.41 0.91 16 43 H 0.39 10.87 6.33 45.56 0.29 11.16 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 46 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 47 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 48 H 0.12 1.19 5.89 -52.49 -0.31 0.88 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -28.03 378.80 -11.03 -39.05 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.72 Total: 11.84 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -2.58 Total: -20.61 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: -0.94 Total: -35.19 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.48 Total: -16.19 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.03 -11.03 -39.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428288273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.994 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds