Wall clock time and date at job start Tue Mar 31 2020 08:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 C 1.53004 * 109.46761 * 240.00277 * 2 1 3 5 5 C 1.50699 * 109.47181 * 120.00663 * 2 1 3 6 6 C 1.38238 * 119.99939 * 59.99332 * 5 2 1 7 7 C 1.38236 * 119.99608 * 180.02562 * 6 5 2 8 8 C 1.38241 * 120.00092 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99728 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47401 * 90.00020 * 9 8 7 11 11 N 1.46897 * 109.47109 * 180.02562 * 10 9 8 12 12 C 1.47479 * 110.99965 * 169.99973 * 11 10 9 13 13 C 1.53517 * 87.99753 * 138.66774 * 12 11 10 14 14 O 1.42906 * 114.16678 * 87.65378 * 13 12 11 15 15 C 1.50698 * 114.17065 * 220.35504 * 13 12 11 16 16 H 1.07995 * 120.00122 * 0.02562 * 15 13 12 17 17 C 1.37875 * 119.99831 * 180.02562 * 15 13 12 18 18 N 1.31519 * 120.00191 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99974 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47158 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47414 * 119.99897 * 19 17 15 22 22 H 1.48501 * 109.47275 * 239.99918 * 19 17 15 23 23 C 1.47487 * 110.99585 * 265.96938 * 11 10 9 24 24 C 1.38229 * 119.99792 * 0.25070 * 8 7 6 25 25 C 1.38234 * 119.99571 * 240.02497 * 5 2 1 26 26 H 1.08997 * 109.47465 * 299.99678 * 1 2 3 27 27 H 1.09007 * 109.47079 * 59.99837 * 1 2 3 28 28 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46972 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47522 * 300.00239 * 3 2 1 31 31 H 1.09007 * 109.46523 * 60.00404 * 3 2 1 32 32 H 1.08993 * 109.47524 * 299.99608 * 4 2 1 33 33 H 1.09003 * 109.47260 * 60.00837 * 4 2 1 34 34 H 1.09005 * 109.46490 * 179.97438 * 4 2 1 35 35 H 1.07991 * 119.99965 * 0.02562 * 6 5 2 36 36 H 1.08001 * 119.99495 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.46944 * 329.99411 * 9 8 7 38 38 H 1.08996 * 109.46710 * 209.99935 * 9 8 7 39 39 H 1.08993 * 109.47213 * 59.99403 * 10 9 8 40 40 H 1.09000 * 109.46643 * 299.99814 * 10 9 8 41 41 H 1.09002 * 113.47562 * 253.46722 * 12 11 10 42 42 H 1.09003 * 113.47677 * 23.87325 * 12 11 10 43 43 H 0.96696 * 113.99578 * 180.02562 * 14 13 12 44 44 H 0.96998 * 120.00131 * 180.02562 * 18 17 15 45 45 H 1.09004 * 113.47787 * 336.06095 * 23 11 10 46 46 H 1.09001 * 113.47615 * 106.47267 * 23 11 10 47 47 H 1.08010 * 119.99873 * 179.72843 * 24 8 7 48 48 H 1.07993 * 120.00420 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6983 -2.0340 1.4490 7 6 2.1587 -2.6856 2.5779 8 6 2.9527 -2.0135 3.4884 9 6 3.4541 -2.7237 4.7194 10 6 4.8021 -3.3805 4.4158 11 7 5.2905 -4.0733 5.6155 12 6 6.4614 -4.9131 5.3011 13 6 7.0918 -4.4321 6.6155 14 8 6.7405 -5.2192 7.7554 15 6 8.5674 -4.1407 6.5218 16 1 9.0860 -4.2759 5.5842 17 6 9.2553 -3.7014 7.6330 18 7 8.6238 -3.5371 8.7749 19 14 11.0842 -3.3395 7.5166 20 1 11.5538 -3.6026 6.1326 21 1 11.3301 -1.9160 7.8610 22 1 11.8229 -4.2126 8.4639 23 6 6.1924 -3.2060 6.3962 24 6 3.2819 -0.6885 3.2725 25 6 2.8266 -0.0386 2.1406 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6766 1.9562 0.8901 32 1 1.6767 -1.7488 -1.2494 33 1 1.6767 -0.2073 -2.1393 34 1 3.1300 -0.7208 -1.2495 35 1 1.0777 -2.5588 0.7380 36 1 1.8973 -3.7194 2.7490 37 1 2.7358 -3.4882 5.0156 38 1 3.5745 -2.0049 5.5298 39 1 5.5203 -2.6160 4.1195 40 1 4.6816 -4.0994 3.6053 41 1 6.2400 -5.9804 5.2906 42 1 7.0043 -4.5866 4.4140 43 1 7.1386 -4.9138 8.5820 44 1 9.1077 -3.2277 9.5566 45 1 6.6642 -2.4233 5.8021 46 1 5.7428 -2.8257 7.3134 47 1 3.8987 -0.1621 3.9861 48 1 3.0875 0.9953 1.9698 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428288273.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:22 Heat of formation + Delta-G solvation = -26.398179 kcal Electronic energy + Delta-G solvation = -24396.541875 eV Core-core repulsion = 21029.848158 eV Total energy + Delta-G solvation = -3366.693717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.11813 -40.67280 -37.75295 -36.34334 -34.13521 -33.74229 -31.99995 -30.37323 -28.31165 -28.20381 -28.07957 -26.73170 -25.99194 -23.38118 -23.23707 -22.00728 -20.52877 -20.04042 -19.23935 -17.49257 -17.16370 -16.73399 -16.60625 -15.98758 -15.86243 -15.66929 -15.23884 -15.08924 -14.87179 -14.55107 -14.46792 -14.20743 -13.84899 -13.71832 -13.47361 -13.31907 -13.12455 -12.98988 -12.82099 -12.75425 -12.55774 -12.48850 -12.34839 -12.27232 -12.14541 -12.10050 -11.77174 -11.60383 -11.44541 -11.32143 -11.13963 -10.65434 -10.10068 -9.79992 -9.71177 -9.36974 -8.26871 -6.44702 0.43538 0.52361 1.40336 1.43324 1.54798 2.36039 2.81762 2.93834 3.21596 3.67922 3.79733 3.87563 3.94824 4.08296 4.13821 4.15886 4.17371 4.27020 4.37353 4.40868 4.45509 4.55210 4.58684 4.60341 4.64531 4.79464 4.80210 4.88191 4.90648 4.91300 5.01801 5.02883 5.04726 5.12007 5.14784 5.19510 5.22476 5.28299 5.38233 5.38352 5.45710 5.47571 5.61143 5.74025 5.76032 5.78884 5.95081 6.14543 6.31645 6.61433 7.28465 7.54778 8.78680 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.024537 B = 0.002561 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.843485 B =10930.125311 C =11463.106446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.137 4.137 5 C -0.080 4.080 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.092 4.092 9 C -0.061 4.061 10 C 0.031 3.969 11 N -0.475 5.475 12 C 0.012 3.988 13 C 0.218 3.782 14 O -0.583 6.583 15 C -0.556 4.556 16 H 0.066 0.934 17 C 0.025 3.975 18 N -0.920 5.920 19 Si 0.970 3.030 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.009 4.009 24 C -0.128 4.128 25 C -0.126 4.126 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.075 0.925 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.384 0.616 44 H 0.275 0.725 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.118 0.882 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.263 8.868 -18.043 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.029 4.029 3 C -0.201 4.201 4 C -0.194 4.194 5 C -0.080 4.080 6 C -0.135 4.135 7 C -0.140 4.140 8 C -0.093 4.093 9 C -0.099 4.099 10 C -0.098 4.098 11 N -0.197 5.197 12 C -0.116 4.116 13 C 0.177 3.823 14 O -0.395 6.395 15 C -0.594 4.594 16 H 0.084 0.916 17 C -0.175 4.175 18 N -0.561 5.561 19 Si 0.795 3.205 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.143 4.143 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.155 0.845 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.239 0.761 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.136 0.864 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.210 8.307 -18.021 25.002 hybrid contribution 1.977 0.831 0.539 2.212 sum -13.233 9.138 -17.482 23.753 Atomic orbital electron populations 1.21875 0.92971 1.02290 1.02178 1.19547 0.96211 0.95240 0.91950 1.21965 1.01069 0.94630 1.02469 1.21885 1.00771 1.00427 0.96350 1.20074 0.97322 0.94198 0.96364 1.21149 1.00364 0.94547 0.97397 1.21211 0.97979 1.00304 0.94491 1.19888 0.98344 0.94477 0.96546 1.20320 0.95918 0.98875 0.94738 1.22624 0.96476 0.97353 0.93353 1.68792 1.22887 1.13110 1.14949 1.23957 0.91082 0.98863 0.97737 1.19761 0.91128 0.87344 0.84034 1.86009 1.75396 1.57665 1.20451 1.21861 0.94717 1.45532 0.97307 0.91619 1.25855 1.03426 0.93536 0.94651 1.69378 1.38154 1.47038 1.01553 0.85322 0.78870 0.77864 0.78446 1.19134 1.20204 1.20275 1.24526 0.94166 0.97826 0.97378 1.21213 1.00469 0.94534 0.98426 1.21348 0.98281 1.00803 0.93917 0.93122 0.91043 0.92295 0.92610 0.91134 0.92384 0.92300 0.91011 0.93358 0.84524 0.85333 0.90594 0.92257 0.94566 0.90749 0.91064 0.90664 0.76139 0.91526 0.92313 0.93177 0.86424 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.29 71.98 0.60 -1.09 16 2 C -0.03 -0.43 0.85 -52.93 -0.05 -0.47 16 3 C -0.14 -1.86 7.13 71.98 0.51 -1.34 16 4 C -0.14 -1.80 8.29 71.98 0.60 -1.20 16 5 C -0.08 -1.56 4.76 -19.87 -0.09 -1.65 16 6 C -0.12 -2.35 8.71 22.27 0.19 -2.16 16 7 C -0.12 -2.85 9.70 22.27 0.22 -2.64 16 8 C -0.09 -2.45 5.13 -19.87 -0.10 -2.55 16 9 C -0.06 -1.84 5.67 29.85 0.17 -1.67 16 10 C 0.03 1.05 4.80 86.30 0.41 1.47 16 11 N -0.48 -20.18 6.33 -927.48 -5.87 -26.06 16 12 C 0.01 0.55 7.09 83.58 0.59 1.15 16 13 C 0.22 11.39 1.57 -11.15 -0.02 11.37 16 14 O -0.58 -32.88 13.54 -148.98 -2.02 -34.89 16 15 C -0.56 -30.07 8.69 25.60 0.22 -29.85 16 16 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 17 C 0.02 1.31 5.40 84.65 0.46 1.77 16 18 N -0.92 -50.10 11.02 21.45 0.24 -49.86 16 19 Si 0.97 41.71 29.54 68.60 2.03 43.73 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 23 C -0.01 -0.44 7.13 83.62 0.60 0.15 16 24 C -0.13 -3.26 9.70 22.27 0.22 -3.04 16 25 C -0.13 -2.72 8.98 22.27 0.20 -2.52 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.71 7.39 -2.38 -0.02 0.69 16 29 H 0.05 0.76 7.51 -2.39 -0.02 0.74 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.76 7.51 -2.38 -0.02 0.74 16 32 H 0.06 0.75 7.39 -2.39 -0.02 0.73 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.14 2.16 7.10 -2.92 -0.02 2.13 16 36 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.08 2.27 8.09 -2.39 -0.02 2.25 16 38 H 0.06 1.90 8.08 -2.39 -0.02 1.88 16 39 H 0.04 1.28 7.30 -2.39 -0.02 1.26 16 40 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 41 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.08 3.12 7.87 -2.39 -0.02 3.10 16 43 H 0.38 22.06 6.33 -74.06 -0.47 21.59 16 44 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 45 H 0.06 2.74 7.38 -2.39 -0.02 2.73 16 46 H 0.05 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.12 2.94 8.06 -2.91 -0.02 2.92 16 48 H 0.14 2.48 5.89 -2.91 -0.02 2.47 16 Total: -1.00 -59.22 378.80 -0.45 -59.67 By element: Atomic # 1 Polarization: 41.24 SS G_CDS: 0.45 Total: 41.70 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 4.72 Total: -34.28 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -5.64 Total: -75.92 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -2.02 Total: -34.89 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.73 kcal Total: -59.22 -0.45 -59.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428288273.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.269 kcal (2) G-P(sol) polarization free energy of solvation -59.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds