Wall clock time and date at job start Tue Mar 31 2020 07:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34511 * 125.79072 * 2 1 4 4 C 1.41378 * 106.84136 * 179.74521 * 3 2 1 5 5 C 1.34518 * 106.84045 * 0.37419 * 4 3 2 6 6 C 1.50701 * 125.78835 * 179.88256 * 5 4 3 7 7 H 1.08999 * 109.47157 * 19.72176 * 6 5 4 8 8 N 1.46903 * 109.46830 * 139.71829 * 6 5 4 9 9 C 1.46905 * 111.00006 * 238.16416 * 8 6 5 10 10 C 1.52995 * 109.47158 * 185.89247 * 9 8 6 11 11 C 1.50701 * 115.55040 * 322.27575 * 10 9 8 12 12 H 1.08004 * 120.00029 * 99.44039 * 11 10 9 13 13 C 1.37875 * 120.00450 * 279.44236 * 11 10 9 14 14 N 1.31525 * 119.99522 * 5.10255 * 13 11 10 15 15 Si 1.86800 * 120.00518 * 185.09650 * 13 11 10 16 16 H 1.48504 * 109.46868 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46739 * 120.00103 * 15 13 11 18 18 H 1.48497 * 109.47365 * 240.00050 * 15 13 11 19 19 C 1.53004 * 117.49968 * 176.60978 * 10 9 8 20 20 C 1.53007 * 60.03057 * 252.49345 * 19 10 9 21 21 C 1.52992 * 109.47416 * 259.71764 * 6 5 4 22 22 C 1.54268 * 110.03427 * 179.04711 * 21 6 5 23 23 C 1.54887 * 104.19946 * 217.10537 * 22 21 6 24 24 C 1.54895 * 102.74555 * 37.93883 * 23 22 21 25 25 C 1.53876 * 110.03318 * 61.87794 * 21 6 5 26 26 O 1.34295 * 108.41860 * 359.62257 * 5 4 3 27 27 H 1.08998 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47515 * 300.00098 * 1 2 3 29 29 H 1.08997 * 109.47117 * 59.99935 * 1 2 3 30 30 H 1.08000 * 126.58118 * 0.02562 * 3 2 1 31 31 H 1.08001 * 126.58031 * 180.23064 * 4 3 2 32 32 H 1.00904 * 111.00004 * 2.11390 * 8 6 5 33 33 H 1.09002 * 109.47459 * 65.88919 * 9 8 6 34 34 H 1.08997 * 109.46909 * 305.89053 * 9 8 6 35 35 H 0.96999 * 119.99448 * 185.01143 * 14 13 11 36 36 H 1.08996 * 117.49375 * 359.97438 * 19 10 9 37 37 H 1.08996 * 117.49791 * 145.00069 * 19 10 9 38 38 H 1.09000 * 117.49615 * 107.49694 * 20 19 10 39 39 H 1.08999 * 117.50158 * 252.52093 * 20 19 10 40 40 H 1.09004 * 110.01838 * 300.48563 * 21 6 5 41 41 H 1.08998 * 110.48606 * 335.78786 * 22 21 6 42 42 H 1.09004 * 110.48642 * 98.42291 * 22 21 6 43 43 H 1.09002 * 110.75440 * 279.62831 * 23 22 21 44 44 H 1.08992 * 110.91547 * 156.32965 * 23 22 21 45 45 H 1.09003 * 110.48366 * 203.38248 * 24 23 22 46 46 H 1.09001 * 110.59532 * 80.79436 * 24 23 22 47 47 H 1.08997 * 110.03194 * 238.56763 * 25 21 6 48 48 H 1.08993 * 110.02930 * 359.95533 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0060 5 6 3.5813 -0.7123 0.0009 6 6 4.7705 -1.6379 0.0019 7 1 5.6502 -1.0990 0.3539 8 7 4.5046 -2.7757 0.8923 9 6 5.5205 -2.8655 1.9496 10 6 5.2967 -4.1405 2.7651 11 6 3.8566 -4.5112 3.0096 12 1 3.3815 -5.2643 2.3983 13 6 3.1454 -3.8890 4.0136 14 7 3.6907 -2.9027 4.6916 15 14 1.4074 -4.4465 4.4108 16 1 1.0288 -5.5657 3.5111 17 1 1.3447 -4.9038 5.8223 18 1 0.4672 -3.3138 4.2153 19 6 6.3054 -4.4582 3.8707 20 6 6.2994 -5.2825 2.5817 21 6 5.0201 -2.1492 -1.4183 22 6 6.2502 -3.0799 -1.4364 23 6 6.9492 -2.7598 -2.7810 24 6 6.7635 -1.2271 -2.9062 25 6 5.3464 -0.9711 -2.3529 26 8 2.2924 -1.0894 0.0006 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9666 2.1204 0.0004 31 1 4.5212 1.2433 0.0111 32 1 3.5773 -2.7179 1.2859 33 1 5.4418 -1.9972 2.6039 34 1 6.5126 -2.8920 1.4989 35 1 3.2196 -2.5134 5.4449 36 1 7.1287 -3.7591 4.0168 37 1 5.9274 -4.9354 4.7748 38 1 7.1186 -5.1254 1.8800 39 1 5.9171 -6.3017 2.6377 40 1 4.1421 -2.6826 -1.7825 41 1 6.9114 -2.8547 -0.5996 42 1 5.9390 -4.1242 -1.4073 43 1 6.4573 -3.2771 -3.6048 44 1 8.0071 -3.0188 -2.7409 45 1 6.8269 -0.9192 -3.9499 46 1 7.5075 -0.7007 -2.3082 47 1 4.6273 -0.9334 -3.1711 48 1 5.3262 -0.0352 -1.7948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430746760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:48 Heat of formation + Delta-G solvation = 18.981731 kcal Electronic energy + Delta-G solvation = -26066.865281 eV Core-core repulsion = 22702.139384 eV Total energy + Delta-G solvation = -3364.725897 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30487 -38.46178 -36.71777 -34.41998 -32.86783 -31.89687 -31.57433 -29.46970 -28.36669 -26.63548 -25.51629 -24.48601 -22.18695 -21.47171 -20.99186 -20.48740 -19.92250 -19.30796 -18.82681 -16.49246 -15.94439 -15.85393 -15.59399 -14.85711 -14.62589 -14.53589 -13.94683 -13.66671 -13.37817 -13.08269 -13.06370 -12.88882 -12.56206 -12.53310 -12.39883 -12.25313 -11.68856 -11.45475 -11.16146 -10.98629 -10.96052 -10.84803 -10.78054 -10.68974 -10.62107 -10.42729 -10.38950 -10.16020 -10.08734 -9.55378 -9.35102 -8.74120 -8.41934 -8.09657 -7.91130 -7.36511 -5.99763 -4.03111 2.04733 2.89700 3.20643 3.30027 3.38949 3.43768 4.44476 4.72201 4.75808 4.88893 4.98219 5.09974 5.23785 5.30059 5.32138 5.43278 5.49813 5.52351 5.62495 5.65961 5.71912 5.79263 5.83772 5.87502 5.94885 6.02610 6.06077 6.08425 6.19014 6.22589 6.28298 6.34715 6.42545 6.45482 6.49014 6.56783 6.68546 6.76570 6.78999 6.81621 6.85008 7.01180 7.15373 7.41257 7.51269 7.55319 7.93124 8.08732 8.41302 8.56790 8.99979 9.61241 11.08898 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.006524 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.087122 B = 4290.794880 C = 6355.358038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.214 4.214 4 C -0.217 4.217 5 C -0.004 4.004 6 C 0.172 3.828 7 H 0.079 0.921 8 N -0.662 5.662 9 C 0.107 3.893 10 C 0.054 3.946 11 C -0.477 4.477 12 H 0.061 0.939 13 C 0.068 3.932 14 N -0.881 5.881 15 Si 0.882 3.118 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.286 1.286 19 C -0.168 4.168 20 C -0.205 4.205 21 C -0.073 4.073 22 C -0.101 4.101 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.123 4.123 26 O -0.161 6.161 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.362 0.638 33 H 0.029 0.971 34 H 0.039 0.961 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.980 6.912 -12.489 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.072 4.072 3 C -0.233 4.233 4 C -0.236 4.236 5 C -0.056 4.056 6 C 0.061 3.939 7 H 0.097 0.903 8 N -0.295 5.295 9 C -0.022 4.022 10 C 0.053 3.947 11 C -0.516 4.516 12 H 0.079 0.921 13 C -0.134 4.134 14 N -0.519 5.519 15 Si 0.710 3.290 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.206 4.206 20 C -0.242 4.242 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.166 4.166 24 C -0.161 4.161 25 C -0.162 4.162 26 O -0.056 6.056 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.102 6.318 -12.762 14.283 hybrid contribution -1.120 0.863 1.114 1.800 sum -0.018 7.181 -11.649 13.684 Atomic orbital electron populations 1.20250 0.85659 1.03980 1.02963 1.22354 0.93921 0.84423 1.06497 1.21421 0.92831 0.98962 1.10125 1.21469 0.97834 0.93884 1.10456 1.23132 0.83623 0.94778 1.04048 1.20447 0.89520 0.88647 0.95295 0.90340 1.60523 1.08363 1.38354 1.22275 1.21499 0.91751 0.98331 0.90616 1.18769 0.91261 0.90101 0.94520 1.20448 0.93826 1.20988 1.16300 0.92058 1.24968 0.97570 0.94336 0.96573 1.70028 1.38568 1.23396 1.19900 0.86679 0.85374 0.78727 0.78186 1.19609 1.21162 1.21195 1.22570 1.02253 1.02785 0.93024 1.22973 1.03261 0.97464 1.00546 1.21766 0.99059 0.95369 0.93037 1.22202 0.95729 0.99854 0.96084 1.22547 1.00057 0.95597 0.98356 1.22348 0.97060 0.96561 1.00103 1.22260 0.96363 0.98813 0.98717 1.83994 1.16212 1.34653 1.70782 0.90579 0.90025 0.90131 0.84093 0.84083 0.81599 0.95269 0.94262 0.93308 0.92221 0.90401 0.91821 0.90781 0.90762 0.91690 0.91068 0.91944 0.92069 0.92374 0.91967 0.92325 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.42 36.01 0.38 -0.47 16 2 C -0.02 -0.34 7.32 -35.63 -0.26 -0.60 16 3 C -0.21 -3.24 10.81 -39.71 -0.43 -3.66 16 4 C -0.22 -3.47 9.69 -39.70 -0.38 -3.85 16 5 C 0.00 -0.07 5.28 -35.62 -0.19 -0.26 16 6 C 0.17 2.96 1.93 -68.87 -0.13 2.82 16 7 H 0.08 1.33 7.52 -51.93 -0.39 0.94 16 8 N -0.66 -13.68 5.79 -107.95 -0.63 -14.31 16 9 C 0.11 2.37 5.49 -3.82 -0.02 2.35 16 10 C 0.05 1.31 1.71 -155.62 -0.27 1.05 16 11 C -0.48 -12.75 7.42 -34.44 -0.26 -13.00 16 12 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 13 C 0.07 1.84 5.42 -17.82 -0.10 1.74 16 14 N -0.88 -24.76 13.09 55.43 0.73 -24.04 16 15 Si 0.88 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 C -0.17 -3.95 9.69 -26.73 -0.26 -4.21 16 20 C -0.21 -4.50 9.89 -26.69 -0.26 -4.77 16 21 C -0.07 -1.09 2.69 -89.50 -0.24 -1.33 16 22 C -0.10 -1.44 6.02 -25.07 -0.15 -1.60 16 23 C -0.13 -1.49 6.91 -24.74 -0.17 -1.67 16 24 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 25 C -0.12 -1.57 6.04 -25.61 -0.15 -1.73 16 26 O -0.16 -3.01 10.09 5.73 0.06 -2.95 16 27 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.14 1.97 8.04 -52.49 -0.42 1.55 16 32 H 0.36 8.52 6.65 -39.29 -0.26 8.25 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.04 0.79 6.90 -51.93 -0.36 0.44 16 35 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.06 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 0.98 6.86 -51.93 -0.36 0.63 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.06 0.83 6.29 -51.93 -0.33 0.51 16 LS Contribution 381.89 15.07 5.76 5.76 Total: -1.00 -28.28 381.89 -10.60 -38.88 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -8.42 Total: 11.23 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: -3.07 Total: -30.74 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.10 Total: -38.34 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: 0.06 Total: -2.95 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.28 -10.60 -38.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430746760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.860 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds