Wall clock time and date at job start Tue Mar 31 2020 07:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34511 * 125.79072 * 2 1 4 4 C 1.41378 * 106.84136 * 179.74521 * 3 2 1 5 5 C 1.34518 * 106.84045 * 0.37419 * 4 3 2 6 6 C 1.50701 * 125.78835 * 179.88256 * 5 4 3 7 7 H 1.08999 * 109.47157 * 19.72176 * 6 5 4 8 8 N 1.46903 * 109.46830 * 139.71829 * 6 5 4 9 9 C 1.46905 * 111.00006 * 238.16416 * 8 6 5 10 10 C 1.52995 * 109.47158 * 185.89247 * 9 8 6 11 11 C 1.50701 * 115.55040 * 322.27575 * 10 9 8 12 12 H 1.08004 * 120.00029 * 99.44039 * 11 10 9 13 13 C 1.37875 * 120.00450 * 279.44236 * 11 10 9 14 14 N 1.31525 * 119.99522 * 5.10255 * 13 11 10 15 15 Si 1.86800 * 120.00518 * 185.09650 * 13 11 10 16 16 H 1.48504 * 109.46868 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46739 * 120.00103 * 15 13 11 18 18 H 1.48497 * 109.47365 * 240.00050 * 15 13 11 19 19 C 1.53004 * 117.49968 * 176.60978 * 10 9 8 20 20 C 1.53007 * 60.03057 * 252.49345 * 19 10 9 21 21 C 1.52992 * 109.47416 * 259.71764 * 6 5 4 22 22 C 1.54268 * 110.03427 * 179.04711 * 21 6 5 23 23 C 1.54887 * 104.19946 * 217.10537 * 22 21 6 24 24 C 1.54895 * 102.74555 * 37.93883 * 23 22 21 25 25 C 1.53876 * 110.03318 * 61.87794 * 21 6 5 26 26 O 1.34295 * 108.41860 * 359.62257 * 5 4 3 27 27 H 1.08998 * 109.47426 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47515 * 300.00098 * 1 2 3 29 29 H 1.08997 * 109.47117 * 59.99935 * 1 2 3 30 30 H 1.08000 * 126.58118 * 0.02562 * 3 2 1 31 31 H 1.08001 * 126.58031 * 180.23064 * 4 3 2 32 32 H 1.00904 * 111.00004 * 2.11390 * 8 6 5 33 33 H 1.09002 * 109.47459 * 65.88919 * 9 8 6 34 34 H 1.08997 * 109.46909 * 305.89053 * 9 8 6 35 35 H 0.96999 * 119.99448 * 185.01143 * 14 13 11 36 36 H 1.08996 * 117.49375 * 359.97438 * 19 10 9 37 37 H 1.08996 * 117.49791 * 145.00069 * 19 10 9 38 38 H 1.09000 * 117.49615 * 107.49694 * 20 19 10 39 39 H 1.08999 * 117.50158 * 252.52093 * 20 19 10 40 40 H 1.09004 * 110.01838 * 300.48563 * 21 6 5 41 41 H 1.08998 * 110.48606 * 335.78786 * 22 21 6 42 42 H 1.09004 * 110.48642 * 98.42291 * 22 21 6 43 43 H 1.09002 * 110.75440 * 279.62831 * 23 22 21 44 44 H 1.08992 * 110.91547 * 156.32965 * 23 22 21 45 45 H 1.09003 * 110.48366 * 203.38248 * 24 23 22 46 46 H 1.09001 * 110.59532 * 80.79436 * 24 23 22 47 47 H 1.08997 * 110.03194 * 238.56763 * 25 21 6 48 48 H 1.08993 * 110.02930 * 359.95533 * 25 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 0.0060 5 6 3.5813 -0.7123 0.0009 6 6 4.7705 -1.6379 0.0019 7 1 5.6502 -1.0990 0.3539 8 7 4.5046 -2.7757 0.8923 9 6 5.5205 -2.8655 1.9496 10 6 5.2967 -4.1405 2.7651 11 6 3.8566 -4.5112 3.0096 12 1 3.3815 -5.2643 2.3983 13 6 3.1454 -3.8890 4.0136 14 7 3.6907 -2.9027 4.6916 15 14 1.4074 -4.4465 4.4108 16 1 1.0288 -5.5657 3.5111 17 1 1.3447 -4.9038 5.8223 18 1 0.4672 -3.3138 4.2153 19 6 6.3054 -4.4582 3.8707 20 6 6.2994 -5.2825 2.5817 21 6 5.0201 -2.1492 -1.4183 22 6 6.2502 -3.0799 -1.4364 23 6 6.9492 -2.7598 -2.7810 24 6 6.7635 -1.2271 -2.9062 25 6 5.3464 -0.9711 -2.3529 26 8 2.2924 -1.0894 0.0006 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9666 2.1204 0.0004 31 1 4.5212 1.2433 0.0111 32 1 3.5773 -2.7179 1.2859 33 1 5.4418 -1.9972 2.6039 34 1 6.5126 -2.8920 1.4989 35 1 3.2196 -2.5134 5.4449 36 1 7.1287 -3.7591 4.0168 37 1 5.9274 -4.9354 4.7748 38 1 7.1186 -5.1254 1.8800 39 1 5.9171 -6.3017 2.6377 40 1 4.1421 -2.6826 -1.7825 41 1 6.9114 -2.8547 -0.5996 42 1 5.9390 -4.1242 -1.4073 43 1 6.4573 -3.2771 -3.6048 44 1 8.0071 -3.0188 -2.7409 45 1 6.8269 -0.9192 -3.9499 46 1 7.5075 -0.7007 -2.3082 47 1 4.6273 -0.9334 -3.1711 48 1 5.3262 -0.0352 -1.7948 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430746760.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:47 Heat of formation + Delta-G solvation = 5.754779 kcal Electronic energy + Delta-G solvation = -26067.438845 eV Core-core repulsion = 22702.139384 eV Total energy + Delta-G solvation = -3365.299461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.57022 -39.71145 -38.44007 -35.85050 -34.10253 -33.97613 -32.80658 -30.70301 -29.42322 -27.86108 -27.45428 -26.05003 -23.55947 -22.84086 -22.74520 -21.51265 -21.14126 -20.97536 -20.22704 -18.06634 -17.57520 -17.21915 -16.76902 -16.58670 -16.09104 -15.88683 -15.58749 -15.18679 -14.79844 -14.38323 -14.11314 -14.06232 -13.86001 -13.74788 -13.73449 -13.65387 -13.25204 -13.00394 -12.86103 -12.74872 -12.62172 -12.35540 -11.99110 -11.96502 -11.89918 -11.80289 -11.77117 -11.42883 -11.33449 -11.17381 -10.76950 -10.72142 -10.41390 -9.94511 -9.17072 -9.04068 -8.08616 -6.15964 0.79125 1.36074 1.40157 1.50168 1.68260 2.00436 2.43251 3.19301 3.31577 3.58377 3.61426 3.84302 3.92299 4.01415 4.08308 4.15136 4.27606 4.36747 4.51329 4.53804 4.62137 4.64588 4.68569 4.72850 4.79055 4.82624 4.83270 4.86797 4.91391 4.95547 4.96687 5.03020 5.06882 5.13010 5.17384 5.20990 5.28251 5.29125 5.33803 5.50600 5.53998 5.56840 5.63336 5.66150 5.67888 5.80644 6.21793 6.38728 6.56485 6.64290 6.90907 7.50287 8.99293 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.006524 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.087122 B = 4290.794880 C = 6355.358038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.037 4.037 3 C -0.219 4.219 4 C -0.214 4.214 5 C -0.034 4.034 6 C 0.174 3.826 7 H 0.080 0.920 8 N -0.664 5.664 9 C 0.124 3.876 10 C 0.025 3.975 11 C -0.482 4.482 12 H 0.047 0.953 13 C 0.028 3.972 14 N -0.907 5.907 15 Si 0.935 3.065 16 H -0.269 1.269 17 H -0.283 1.283 18 H -0.285 1.285 19 C -0.171 4.171 20 C -0.182 4.182 21 C -0.068 4.068 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.118 4.118 26 O -0.191 6.191 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.170 0.830 31 H 0.159 0.841 32 H 0.342 0.658 33 H -0.003 1.003 34 H 0.059 0.941 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 7.870 -14.088 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.238 4.238 4 C -0.234 4.234 5 C -0.085 4.085 6 C 0.064 3.936 7 H 0.098 0.902 8 N -0.294 5.294 9 C -0.006 4.006 10 C 0.024 3.976 11 C -0.520 4.520 12 H 0.065 0.935 13 C -0.171 4.171 14 N -0.546 5.546 15 Si 0.762 3.238 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.212 1.212 19 C -0.210 4.210 20 C -0.219 4.219 21 C -0.087 4.087 22 C -0.139 4.139 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.156 4.156 26 O -0.088 6.088 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.128 0.872 30 H 0.188 0.812 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.015 0.985 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.406 7.270 -14.381 16.175 hybrid contribution -1.243 0.571 1.596 2.102 sum 0.163 7.840 -12.785 14.999 Atomic orbital electron populations 1.20450 0.83043 1.04297 1.05004 1.23236 0.95621 0.84059 1.05735 1.21801 0.92211 1.00196 1.09584 1.21801 0.99138 0.93428 1.09035 1.23211 0.83526 0.95537 1.06191 1.20498 0.89739 0.87760 0.95588 0.90204 1.60528 1.06777 1.40517 1.21607 1.21276 0.93066 0.95913 0.90307 1.18941 0.90626 0.92091 0.95905 1.20577 0.95259 1.20296 1.15882 0.93521 1.25518 1.00476 0.94472 0.96674 1.70123 1.39784 1.24347 1.20338 0.85850 0.81802 0.78242 0.77902 1.19386 1.20853 1.21157 1.22483 1.02387 1.03493 0.92596 1.22969 1.02711 0.96526 0.99649 1.21700 0.98625 0.96364 0.92018 1.22169 0.95459 0.98680 0.97601 1.22516 1.00583 0.96096 0.96666 1.22338 0.95785 0.96090 1.01283 1.22205 0.97700 0.97523 0.98165 1.83969 1.16935 1.36348 1.71556 0.91129 0.88728 0.87174 0.81208 0.82290 0.83821 0.98475 0.92280 0.93549 0.90999 0.92566 0.89166 0.90938 0.92739 0.92535 0.92658 0.91327 0.90678 0.90441 0.91381 0.92023 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.42 71.24 0.74 -0.83 16 2 C -0.04 -1.14 7.32 24.83 0.18 -0.96 16 3 C -0.22 -6.29 10.81 22.19 0.24 -6.05 16 4 C -0.21 -6.69 9.69 22.19 0.22 -6.48 16 5 C -0.03 -1.21 5.28 24.83 0.13 -1.08 16 6 C 0.17 6.08 1.93 44.17 0.09 6.17 16 7 H 0.08 2.72 7.52 -2.39 -0.02 2.71 16 8 N -0.66 -28.18 5.79 -495.45 -2.87 -31.05 16 9 C 0.12 5.55 5.49 86.30 0.47 6.03 16 10 C 0.02 1.23 1.71 -52.90 -0.09 1.14 16 11 C -0.48 -26.28 7.42 25.60 0.19 -26.09 16 12 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 13 C 0.03 1.55 5.42 84.65 0.46 2.01 16 14 N -0.91 -52.09 13.09 21.45 0.28 -51.81 16 15 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 16 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 19 C -0.17 -8.07 9.69 30.60 0.30 -7.77 16 20 C -0.18 -7.80 9.89 30.62 0.30 -7.50 16 21 C -0.07 -2.01 2.69 -10.07 -0.03 -2.04 16 22 C -0.10 -2.82 6.02 31.67 0.19 -2.63 16 23 C -0.12 -2.56 6.91 31.89 0.22 -2.34 16 24 C -0.12 -2.31 6.83 31.67 0.22 -2.09 16 25 C -0.12 -2.83 6.04 31.32 0.19 -2.64 16 26 O -0.19 -7.31 10.09 -2.42 -0.02 -7.33 16 27 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.16 4.21 8.04 -2.91 -0.02 4.19 16 32 H 0.34 16.82 6.65 -89.69 -0.60 16.22 16 33 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.06 2.37 6.90 -2.39 -0.02 2.35 16 35 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 36 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.09 3.39 8.07 -2.39 -0.02 3.37 16 39 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.06 1.65 6.86 -2.39 -0.02 1.64 16 42 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.06 1.55 6.29 -2.39 -0.02 1.53 16 Total: -1.00 -61.90 381.89 3.75 -58.14 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.33 Total: 38.90 kcal Atomic # 6 Polarization: -57.17 SS G_CDS: 4.02 Total: -53.16 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: -2.59 Total: -82.86 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.02 Total: -7.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.90 3.75 -58.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430746760.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.897 kcal (2) G-P(sol) polarization free energy of solvation -61.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds