Wall clock time and date at job start Tue Mar 31 2020 08:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46910 * 2 1 4 4 C 1.37983 * 120.07588 * 265.48116 * 3 2 1 5 5 C 1.38330 * 120.14790 * 179.74746 * 4 3 2 6 6 C 1.38385 * 120.29075 * 0.27414 * 5 4 3 7 7 C 1.37936 * 120.14353 * 0.02562 * 6 5 4 8 8 C 1.39556 * 120.07602 * 85.76109 * 3 2 1 9 9 C 1.47845 * 120.14165 * 0.02562 * 8 3 2 10 10 O 1.21553 * 120.00447 * 306.09568 * 9 8 3 11 11 N 1.34777 * 119.99769 * 126.09293 * 9 8 3 12 12 C 1.46500 * 119.99894 * 4.08436 * 11 9 8 13 13 C 1.50701 * 109.46903 * 95.76034 * 12 11 9 14 14 H 1.07997 * 120.00090 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00107 * 179.97438 * 13 12 11 16 16 N 1.31521 * 119.99490 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00395 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46994 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47458 * 119.99788 * 17 15 13 20 20 H 1.48498 * 109.47044 * 240.00189 * 17 15 13 21 21 C 1.46501 * 119.99971 * 184.08639 * 11 9 8 22 22 C 1.52997 * 109.47353 * 89.99968 * 21 11 9 23 23 C 1.53001 * 109.47401 * 180.02562 * 22 21 11 24 24 C 1.52998 * 109.47117 * 64.99471 * 23 22 21 25 25 C 1.52998 * 109.47374 * 185.00284 * 23 22 21 26 26 H 1.08996 * 109.47633 * 59.99323 * 1 2 3 27 27 H 1.08997 * 109.47108 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46699 * 299.99548 * 1 2 3 29 29 H 1.09002 * 109.46699 * 240.00452 * 2 1 3 30 30 H 1.08995 * 109.47442 * 120.00159 * 2 1 3 31 31 H 1.08001 * 119.92236 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.85666 * 180.25836 * 5 4 3 33 33 H 1.07997 * 119.92620 * 179.97438 * 6 5 4 34 34 H 1.08010 * 120.06828 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.47142 * 215.75540 * 12 11 9 36 36 H 1.08991 * 109.47116 * 335.75891 * 12 11 9 37 37 H 0.97004 * 119.99761 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47190 * 210.00090 * 21 11 9 39 39 H 1.08999 * 109.47061 * 329.99858 * 21 11 9 40 40 H 1.09001 * 109.47072 * 300.00194 * 22 21 11 41 41 H 1.08999 * 109.47127 * 59.99930 * 22 21 11 42 42 H 1.09005 * 109.47025 * 304.99709 * 23 22 21 43 43 H 1.08998 * 109.47085 * 60.00883 * 24 23 22 44 44 H 1.09004 * 109.46897 * 179.97438 * 24 23 22 45 45 H 1.08999 * 109.47353 * 300.00350 * 24 23 22 46 46 H 1.09004 * 109.47423 * 59.99590 * 25 23 22 47 47 H 1.08996 * 109.47001 * 179.97438 * 25 23 22 48 48 H 1.08997 * 109.46893 * 299.99789 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3515 2.0414 -1.1903 5 6 2.8077 3.3473 -1.1925 6 6 2.9525 4.0381 -0.0021 7 6 2.6428 3.4273 1.1952 8 6 2.1812 2.1100 1.2044 9 6 1.8476 1.4490 2.4841 10 8 0.7528 0.9446 2.6403 11 7 2.7574 1.4058 3.4774 12 6 4.0434 2.0904 3.3232 13 6 3.9665 3.4534 3.9613 14 1 3.0512 3.7775 4.4340 15 6 5.0647 4.2868 3.9416 16 7 6.1796 3.8919 3.3663 17 14 4.9693 5.9767 4.7319 18 1 3.6147 6.1789 5.3059 19 1 5.9846 6.0767 5.8109 20 1 5.2323 7.0182 3.7066 21 6 2.4605 0.6741 4.7114 22 6 2.9251 -0.7766 4.5686 23 6 2.6144 -1.5409 5.8571 24 6 1.0988 -1.6185 6.0511 25 6 3.1897 -2.9555 5.7624 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.2405 1.5079 -2.1228 32 1 3.0522 3.8299 -2.1273 33 1 3.3096 5.0573 -0.0106 34 1 2.7567 3.9674 2.1236 35 1 4.8263 1.5063 3.8071 36 1 4.2729 2.1979 2.2631 37 1 6.9524 4.4781 3.3527 38 1 2.9824 1.1423 5.5460 39 1 1.3866 0.6950 4.8967 40 1 2.4032 -1.2448 3.7340 41 1 3.9991 -0.7976 4.3833 42 1 3.0631 -1.0223 6.7044 43 1 0.6501 -2.1373 5.2039 44 1 0.8774 -2.1635 6.9689 45 1 0.6890 -0.6108 6.1186 46 1 4.2695 -2.9001 5.6241 47 1 2.9687 -3.4998 6.6805 48 1 2.7411 -3.4741 4.9151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000434117785.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:37 Heat of formation + Delta-G solvation = -52.713408 kcal Electronic energy + Delta-G solvation = -26006.524191 eV Core-core repulsion = 22638.689359 eV Total energy + Delta-G solvation = -3367.834831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42872 -39.38352 -37.76906 -36.51424 -34.84676 -34.48015 -32.31967 -30.43501 -30.20835 -28.79980 -28.01441 -25.48067 -25.00463 -24.55150 -23.48044 -21.84793 -20.90825 -20.09404 -18.62690 -18.17958 -17.43714 -16.76313 -16.63019 -16.31249 -16.13316 -15.70913 -15.16808 -14.76793 -14.71550 -14.54250 -14.44722 -14.22404 -14.08592 -13.90135 -13.67913 -13.39252 -13.15242 -12.99315 -12.82705 -12.75188 -12.67576 -12.53895 -12.48680 -12.24774 -12.06435 -11.94287 -11.73068 -11.65026 -11.55131 -11.51995 -11.43468 -10.69242 -10.55444 -9.66653 -9.58050 -9.42047 -8.20685 -6.34320 0.21002 0.55737 1.37839 1.41808 1.51644 1.83474 2.27989 2.43571 2.93840 3.08734 3.68801 3.86904 3.94370 3.96068 4.01265 4.06528 4.29455 4.32950 4.34629 4.55198 4.55376 4.61885 4.65787 4.68009 4.73722 4.75779 4.81082 4.90167 4.93614 5.01585 5.03028 5.07783 5.11914 5.12917 5.16086 5.20533 5.26051 5.31567 5.45945 5.48327 5.50032 5.56471 5.64962 5.67970 5.69717 5.88161 6.04569 6.13366 6.55485 6.79640 7.28214 7.39662 8.85090 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.008673 B = 0.007108 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.556233 B = 3938.398976 C = 6480.774378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.055 4.055 4 C -0.131 4.131 5 C -0.095 4.095 6 C -0.144 4.144 7 C -0.084 4.084 8 C -0.147 4.147 9 C 0.556 3.444 10 O -0.575 6.575 11 N -0.594 5.594 12 C 0.254 3.746 13 C -0.540 4.540 14 H 0.051 0.949 15 C 0.030 3.970 16 N -0.913 5.913 17 Si 0.950 3.050 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.274 1.274 21 C 0.117 3.883 22 C -0.114 4.114 23 C -0.091 4.091 24 C -0.143 4.143 25 C -0.140 4.140 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.012 0.988 36 H 0.030 0.970 37 H 0.268 0.732 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -7.496 -4.622 10.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.114 4.114 3 C -0.055 4.055 4 C -0.149 4.149 5 C -0.112 4.112 6 C -0.162 4.162 7 C -0.102 4.102 8 C -0.150 4.150 9 C 0.346 3.654 10 O -0.458 6.458 11 N -0.323 5.323 12 C 0.133 3.867 13 C -0.578 4.578 14 H 0.069 0.931 15 C -0.171 4.171 16 N -0.552 5.552 17 Si 0.775 3.225 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.200 1.200 21 C -0.005 4.005 22 C -0.153 4.153 23 C -0.110 4.110 24 C -0.200 4.200 25 C -0.198 4.198 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.175 0.825 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.173 -7.710 -4.543 10.871 hybrid contribution 0.504 1.230 0.774 1.538 sum -5.669 -6.479 -3.768 9.398 Atomic orbital electron populations 1.21732 0.93737 1.02056 1.02219 1.20491 0.97317 0.91419 1.02169 1.20141 0.96765 0.96808 0.91823 1.21230 1.00760 0.95535 0.97390 1.21607 0.96724 0.94420 0.98486 1.21292 1.01486 1.01099 0.92363 1.21811 0.94083 0.94202 1.00128 1.19842 1.05719 0.96070 0.93345 1.18610 0.83778 0.78714 0.84318 1.90597 1.22851 1.49816 1.82511 1.48201 1.17893 1.50425 1.15804 1.19110 0.79337 0.90980 0.97243 1.21533 0.98201 1.00741 1.37329 0.93122 1.25559 0.94670 1.01542 0.95379 1.70030 1.02976 1.38221 1.43949 0.85631 0.78147 0.80133 0.78586 1.19668 1.20373 1.19968 1.21481 1.01013 0.91855 0.86162 1.21868 1.00372 0.94401 0.98671 1.21049 0.96847 0.96684 0.96411 1.21834 0.94800 1.01489 1.01885 1.21783 1.00546 0.95148 1.02296 0.91914 0.91692 0.93146 0.88746 0.93811 0.82520 0.82533 0.85037 0.85672 0.97010 0.95170 0.92297 0.91056 0.90954 0.93187 0.92897 0.90843 0.93259 0.91059 0.93555 0.92876 0.91078 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.07 9.69 71.98 0.70 -3.37 16 2 C -0.08 -2.35 5.38 29.85 0.16 -2.19 16 3 C -0.05 -1.89 5.17 -19.61 -0.10 -1.99 16 4 C -0.13 -3.70 9.67 22.23 0.21 -3.49 16 5 C -0.09 -2.66 10.04 22.33 0.22 -2.43 16 6 C -0.14 -5.02 10.03 22.23 0.22 -4.80 16 7 C -0.08 -3.52 7.70 22.52 0.17 -3.35 16 8 C -0.15 -6.12 4.71 -20.09 -0.09 -6.21 16 9 C 0.56 24.85 6.15 86.79 0.53 25.38 16 10 O -0.58 -26.43 13.43 -3.88 -0.05 -26.48 16 11 N -0.59 -26.58 2.46 -829.58 -2.04 -28.62 16 12 C 0.25 12.66 4.68 85.63 0.40 13.06 16 13 C -0.54 -28.21 7.00 25.60 0.18 -28.03 16 14 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 15 C 0.03 1.55 5.46 84.65 0.46 2.01 16 16 N -0.91 -50.04 13.29 21.45 0.28 -49.76 16 17 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.12 4.56 5.21 86.38 0.45 5.01 16 22 C -0.11 -3.79 5.01 30.59 0.15 -3.64 16 23 C -0.09 -2.37 2.92 -10.79 -0.03 -2.40 16 24 C -0.14 -3.51 8.95 71.98 0.64 -2.87 16 25 C -0.14 -3.06 9.19 71.98 0.66 -2.40 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.81 5.83 -2.39 -0.01 1.80 16 29 H 0.09 2.27 8.06 -2.39 -0.02 2.25 16 30 H 0.04 1.54 7.10 -2.39 -0.02 1.52 16 31 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.13 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.13 5.94 5.42 -2.91 -0.02 5.92 16 35 H 0.01 0.63 8.11 -2.39 -0.02 0.61 16 36 H 0.03 1.60 5.70 -2.39 -0.01 1.59 16 37 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 38 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 39 H 0.07 2.83 5.79 -2.39 -0.01 2.82 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 45 H 0.05 1.25 6.56 -2.39 -0.02 1.23 16 46 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 47 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -60.98 379.34 6.09 -54.90 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.92 Total: 28.11 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 4.95 Total: -21.70 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.75 Total: -78.38 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.05 Total: -26.48 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -60.98 6.09 -54.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000434117785.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.185 kcal (2) G-P(sol) polarization free energy of solvation -60.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds