Wall clock time and date at job start Tue Mar 31 2020 08:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 119.99369 * 2 1 4 4 H 1.08004 * 120.00325 * 318.90348 * 3 2 1 5 5 C 1.38952 * 120.00212 * 138.91032 * 3 2 1 6 6 N 1.31408 * 120.00423 * 154.78108 * 5 3 2 7 7 Si 1.86804 * 119.99767 * 334.77976 * 5 3 2 8 8 H 1.48497 * 109.46873 * 95.07301 * 7 5 3 9 9 H 1.48500 * 109.47089 * 215.07428 * 7 5 3 10 10 H 1.48499 * 109.46883 * 335.07588 * 7 5 3 11 11 C 1.34767 * 120.00714 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00355 * 184.52520 * 11 2 1 13 13 C 1.50705 * 119.99888 * 4.81009 * 11 2 1 14 14 C 1.52999 * 109.47440 * 181.51352 * 13 11 2 15 15 C 1.53003 * 109.46725 * 301.50925 * 13 11 2 16 16 C 1.50701 * 109.47179 * 61.50673 * 13 11 2 17 17 C 1.38231 * 119.99846 * 7.56796 * 16 13 11 18 18 C 1.38241 * 119.99994 * 179.76457 * 17 16 13 19 19 C 1.38239 * 119.99480 * 0.50171 * 18 17 16 20 20 C 1.50697 * 119.99680 * 179.72394 * 19 18 17 21 21 C 1.52998 * 109.47461 * 240.02518 * 20 19 18 22 22 C 1.53002 * 109.47336 * 0.02562 * 20 19 18 23 23 C 1.53006 * 109.46962 * 120.02624 * 20 19 18 24 24 C 1.38235 * 120.00161 * 359.75089 * 19 18 17 25 25 C 1.38230 * 119.99926 * 187.83310 * 16 13 11 26 26 H 1.08996 * 109.47482 * 266.59704 * 1 2 3 27 27 H 1.08999 * 109.47167 * 26.60716 * 1 2 3 28 28 H 1.09006 * 109.46394 * 146.60356 * 1 2 3 29 29 H 0.96999 * 120.00124 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47353 * 59.99355 * 14 13 11 31 31 H 1.08992 * 109.47232 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46890 * 299.99521 * 14 13 11 33 33 H 1.09002 * 109.47166 * 63.39364 * 15 13 11 34 34 H 1.08997 * 109.47018 * 183.39069 * 15 13 11 35 35 H 1.08995 * 109.47485 * 303.39630 * 15 13 11 36 36 H 1.07999 * 120.00416 * 359.97438 * 17 16 13 37 37 H 1.07994 * 120.00224 * 180.22953 * 18 17 16 38 38 H 1.09003 * 109.47115 * 59.99650 * 21 20 19 39 39 H 1.08997 * 109.47519 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46767 * 300.00275 * 21 20 19 41 41 H 1.09007 * 109.46781 * 59.99694 * 22 20 19 42 42 H 1.08996 * 109.47294 * 179.97438 * 22 20 19 43 43 H 1.08991 * 109.47126 * 299.99908 * 22 20 19 44 44 H 1.08993 * 109.46788 * 59.99715 * 23 20 19 45 45 H 1.08997 * 109.46805 * 180.02562 * 23 20 19 46 46 H 1.08998 * 109.46830 * 299.99612 * 23 20 19 47 47 H 1.08000 * 120.00168 * 179.97438 * 24 19 18 48 48 H 1.08007 * 120.00220 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 1.8099 2.0075 -0.6148 5 6 3.2832 1.3358 0.7909 6 7 4.2046 2.2128 0.4611 7 14 3.4963 0.2885 2.3230 8 1 4.3160 -0.9058 1.9961 9 1 4.1781 1.0840 3.3754 10 1 2.1641 -0.1451 2.8153 11 6 2.1390 -1.1670 0.0005 12 8 3.3490 -1.1686 0.0834 13 6 1.3896 -2.4700 -0.1083 14 6 2.3798 -3.6347 -0.0464 15 6 0.3949 -2.5843 1.0486 16 6 0.6444 -2.5131 -1.4175 17 6 0.8464 -1.5229 -2.3606 18 6 0.1666 -1.5650 -3.5636 19 6 -0.7230 -2.5918 -3.8190 20 6 -1.4688 -2.6344 -5.1278 21 6 -2.9741 -2.5807 -4.8592 22 6 -1.0610 -1.4355 -5.9865 23 6 -1.1285 -3.9303 -5.8668 24 6 -0.9289 -3.5792 -2.8738 25 6 -0.2451 -3.5398 -1.6730 26 1 -0.3634 -0.0610 1.0258 27 1 -0.3633 0.9188 -0.4603 28 1 -0.3632 -0.8581 -0.5657 29 1 4.9952 2.3166 1.0134 30 1 2.9188 -3.6035 0.9005 31 1 1.8377 -4.5770 -0.1247 32 1 3.0884 -3.5532 -0.8707 33 1 -0.3467 -1.7894 0.9701 34 1 -0.1041 -3.5524 1.0044 35 1 0.9268 -2.4927 1.9955 36 1 1.5379 -0.7181 -2.1591 37 1 0.3271 -0.7934 -4.3019 38 1 -3.2165 -1.6576 -4.3327 39 1 -3.5135 -2.6120 -5.8058 40 1 -3.2646 -3.4349 -4.2474 41 1 0.0114 -1.4737 -6.1779 42 1 -1.6001 -1.4665 -6.9333 43 1 -1.3034 -0.5124 -5.4601 44 1 -1.4190 -4.7843 -5.2551 45 1 -1.6676 -3.9608 -6.8136 46 1 -0.0562 -3.9684 -6.0583 47 1 -1.6242 -4.3812 -3.0732 48 1 -0.4064 -4.3110 -0.9342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438909199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:04 Heat of formation + Delta-G solvation = 0.794397 kcal Electronic energy + Delta-G solvation = -26607.994220 eV Core-core repulsion = 23242.479661 eV Total energy + Delta-G solvation = -3365.514559 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.55303 -38.95967 -36.55691 -34.53653 -34.04556 -31.89686 -30.83257 -28.89043 -27.41750 -27.35291 -27.30085 -25.98645 -25.07877 -23.10591 -22.11047 -20.83608 -19.27350 -18.80140 -17.25050 -16.49415 -15.56634 -15.25919 -14.84910 -14.61219 -14.42084 -14.28416 -13.95585 -13.69485 -13.54967 -13.22006 -12.90389 -12.83514 -12.56760 -12.52505 -12.18334 -12.07671 -12.00444 -11.81762 -11.79722 -11.72100 -11.62484 -11.33507 -11.05430 -10.99827 -10.95744 -10.74327 -10.49073 -10.36624 -10.23408 -10.08091 -9.86626 -8.60118 -8.49113 -8.35446 -8.13273 -7.53763 -6.18062 -3.88420 1.58440 1.70570 3.33824 3.50455 3.68520 3.88094 3.99668 4.48556 4.57375 4.61753 4.71356 4.93424 5.04600 5.12270 5.25643 5.27190 5.28419 5.39475 5.47814 5.49600 5.51651 5.66039 5.66257 5.70484 5.75761 5.77182 5.89919 5.91474 5.94155 5.98811 6.01625 6.09442 6.17897 6.20587 6.21129 6.23345 6.26259 6.29453 6.41403 6.42671 6.51766 6.68368 6.75474 6.90331 6.99161 7.29716 7.88369 8.01830 8.83035 8.97661 9.48430 9.89740 10.87696 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.004743 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.401062 B = 5901.484653 C = 6464.077154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.461 5.461 3 C -0.361 4.361 4 H 0.093 0.907 5 C 0.100 3.900 6 N -0.860 5.860 7 Si 0.903 3.097 8 H -0.254 1.254 9 H -0.308 1.308 10 H -0.281 1.281 11 C 0.458 3.542 12 O -0.542 6.542 13 C -0.042 4.042 14 C -0.117 4.117 15 C -0.155 4.155 16 C -0.063 4.063 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.079 4.079 20 C -0.028 4.028 21 C -0.137 4.137 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.121 4.121 25 C -0.114 4.114 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.271 0.729 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.140 0.860 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.115 0.885 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.137 -12.286 -8.400 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.183 5.183 3 C -0.486 4.486 4 H 0.111 0.889 5 C -0.110 4.110 6 N -0.494 5.494 7 Si 0.733 3.267 8 H -0.179 1.179 9 H -0.237 1.237 10 H -0.207 1.207 11 C 0.247 3.753 12 O -0.423 6.423 13 C -0.046 4.046 14 C -0.174 4.174 15 C -0.212 4.212 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.137 4.137 19 C -0.079 4.079 20 C -0.028 4.028 21 C -0.194 4.194 22 C -0.202 4.202 23 C -0.194 4.194 24 C -0.139 4.139 25 C -0.132 4.132 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.141 0.859 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.133 0.867 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.367 -12.155 -8.346 19.902 hybrid contribution 0.093 -0.318 0.910 0.969 sum -13.274 -12.473 -7.436 19.674 Atomic orbital electron populations 1.22201 0.83742 1.01921 0.99966 1.43524 1.04009 1.05254 1.65527 1.18787 1.10147 0.91414 1.28281 0.88928 1.25241 0.94039 0.94404 0.97346 1.69813 1.07150 1.35747 1.36724 0.86546 0.78546 0.81353 0.80232 1.17929 1.23714 1.20668 1.19995 0.88051 0.84779 0.82453 1.90536 1.13828 1.85977 1.52003 1.19736 0.95692 0.96109 0.93061 1.21579 0.97964 0.94803 1.03083 1.22261 0.99116 1.02660 0.97154 1.19581 0.96663 0.95044 0.95080 1.21616 0.99020 0.98610 0.92775 1.21162 0.96910 0.98419 0.97207 1.19721 0.97551 0.95430 0.95219 1.19459 0.94849 0.96081 0.92387 1.21879 0.94076 1.02153 1.01303 1.21965 1.01593 0.97551 0.99075 1.21880 1.01688 0.96269 0.99595 1.20783 1.00542 0.98773 0.93786 1.20859 0.97013 0.98218 0.97092 0.94166 0.92029 0.91507 0.91920 0.92122 0.92903 0.91908 0.90474 0.92205 0.92358 0.84229 0.85877 0.92418 0.92674 0.92565 0.92183 0.92685 0.92092 0.92559 0.92663 0.92502 0.86704 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 7.92 59.85 0.47 1.72 16 2 N -0.46 -11.11 1.58 -122.19 -0.19 -11.30 16 3 C -0.36 -10.23 9.68 -14.93 -0.14 -10.38 16 4 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 5 C 0.10 2.97 4.69 -17.47 -0.08 2.89 16 6 N -0.86 -26.59 13.96 55.50 0.77 -25.81 16 7 Si 0.90 24.54 25.14 -169.99 -4.27 20.27 16 8 H -0.25 -7.19 6.26 56.52 0.35 -6.84 16 9 H -0.31 -8.20 7.11 56.52 0.40 -7.80 16 10 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 11 C 0.46 10.96 3.57 -10.99 -0.04 10.92 16 12 O -0.54 -15.25 11.31 5.55 0.06 -15.19 16 13 C -0.04 -0.78 0.59 -156.81 -0.09 -0.88 16 14 C -0.12 -2.03 7.65 37.16 0.28 -1.75 16 15 C -0.15 -2.47 7.76 37.16 0.29 -2.18 16 16 C -0.06 -1.04 3.09 -104.63 -0.32 -1.37 16 17 C -0.10 -1.81 7.31 -39.58 -0.29 -2.10 16 18 C -0.12 -1.77 8.98 -39.58 -0.36 -2.12 16 19 C -0.08 -1.00 4.76 -104.62 -0.50 -1.50 16 20 C -0.03 -0.28 0.85 -155.66 -0.13 -0.41 16 21 C -0.14 -1.22 8.29 37.16 0.31 -0.92 16 22 C -0.14 -1.41 7.13 37.16 0.27 -1.15 16 23 C -0.14 -1.24 8.29 37.16 0.31 -0.94 16 24 C -0.12 -1.49 8.71 -39.58 -0.34 -1.83 16 25 C -0.11 -1.54 8.83 -39.59 -0.35 -1.89 16 26 H 0.04 0.72 7.05 -51.93 -0.37 0.36 16 27 H 0.06 1.13 8.01 -51.93 -0.42 0.71 16 28 H 0.07 1.14 3.63 -51.93 -0.19 0.95 16 29 H 0.27 7.92 8.31 -40.82 -0.34 7.58 16 30 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 31 H 0.05 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.08 1.20 4.20 -51.93 -0.22 0.98 16 34 H 0.06 0.76 7.13 -51.93 -0.37 0.39 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.14 2.99 5.85 -52.49 -0.31 2.68 16 37 H 0.12 1.70 5.90 -52.49 -0.31 1.39 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 41 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 44 H 0.06 0.49 7.39 -51.93 -0.38 0.10 16 45 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.11 1.16 7.10 -52.49 -0.37 0.79 16 48 H 0.12 1.38 7.17 -52.48 -0.38 1.00 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -32.88 355.75 -6.86 -39.74 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.87 Total: 0.81 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -0.72 Total: -13.88 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.58 Total: -37.11 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.06 Total: -15.19 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.27 Total: 20.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.88 -6.86 -39.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438909199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.532 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds