Wall clock time and date at job start Tue Mar 31 2020 08:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 119.99369 * 2 1 4 4 H 1.08004 * 120.00325 * 318.90348 * 3 2 1 5 5 C 1.38952 * 120.00212 * 138.91032 * 3 2 1 6 6 N 1.31408 * 120.00423 * 154.78108 * 5 3 2 7 7 Si 1.86804 * 119.99767 * 334.77976 * 5 3 2 8 8 H 1.48497 * 109.46873 * 95.07301 * 7 5 3 9 9 H 1.48500 * 109.47089 * 215.07428 * 7 5 3 10 10 H 1.48499 * 109.46883 * 335.07588 * 7 5 3 11 11 C 1.34767 * 120.00714 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00355 * 184.52520 * 11 2 1 13 13 C 1.50705 * 119.99888 * 4.81009 * 11 2 1 14 14 C 1.52999 * 109.47440 * 181.51352 * 13 11 2 15 15 C 1.53003 * 109.46725 * 301.50925 * 13 11 2 16 16 C 1.50701 * 109.47179 * 61.50673 * 13 11 2 17 17 C 1.38231 * 119.99846 * 7.56796 * 16 13 11 18 18 C 1.38241 * 119.99994 * 179.76457 * 17 16 13 19 19 C 1.38239 * 119.99480 * 0.50171 * 18 17 16 20 20 C 1.50697 * 119.99680 * 179.72394 * 19 18 17 21 21 C 1.52998 * 109.47461 * 240.02518 * 20 19 18 22 22 C 1.53002 * 109.47336 * 0.02562 * 20 19 18 23 23 C 1.53006 * 109.46962 * 120.02624 * 20 19 18 24 24 C 1.38235 * 120.00161 * 359.75089 * 19 18 17 25 25 C 1.38230 * 119.99926 * 187.83310 * 16 13 11 26 26 H 1.08996 * 109.47482 * 266.59704 * 1 2 3 27 27 H 1.08999 * 109.47167 * 26.60716 * 1 2 3 28 28 H 1.09006 * 109.46394 * 146.60356 * 1 2 3 29 29 H 0.96999 * 120.00124 * 179.97438 * 6 5 3 30 30 H 1.09003 * 109.47353 * 59.99355 * 14 13 11 31 31 H 1.08992 * 109.47232 * 179.97438 * 14 13 11 32 32 H 1.09002 * 109.46890 * 299.99521 * 14 13 11 33 33 H 1.09002 * 109.47166 * 63.39364 * 15 13 11 34 34 H 1.08997 * 109.47018 * 183.39069 * 15 13 11 35 35 H 1.08995 * 109.47485 * 303.39630 * 15 13 11 36 36 H 1.07999 * 120.00416 * 359.97438 * 17 16 13 37 37 H 1.07994 * 120.00224 * 180.22953 * 18 17 16 38 38 H 1.09003 * 109.47115 * 59.99650 * 21 20 19 39 39 H 1.08997 * 109.47519 * 180.02562 * 21 20 19 40 40 H 1.09004 * 109.46767 * 300.00275 * 21 20 19 41 41 H 1.09007 * 109.46781 * 59.99694 * 22 20 19 42 42 H 1.08996 * 109.47294 * 179.97438 * 22 20 19 43 43 H 1.08991 * 109.47126 * 299.99908 * 22 20 19 44 44 H 1.08993 * 109.46788 * 59.99715 * 23 20 19 45 45 H 1.08997 * 109.46805 * 180.02562 * 23 20 19 46 46 H 1.08998 * 109.46830 * 299.99612 * 23 20 19 47 47 H 1.08000 * 120.00168 * 179.97438 * 24 19 18 48 48 H 1.08007 * 120.00220 * 0.02562 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 1.8099 2.0075 -0.6148 5 6 3.2832 1.3358 0.7909 6 7 4.2046 2.2128 0.4611 7 14 3.4963 0.2885 2.3230 8 1 4.3160 -0.9058 1.9961 9 1 4.1781 1.0840 3.3754 10 1 2.1641 -0.1451 2.8153 11 6 2.1390 -1.1670 0.0005 12 8 3.3490 -1.1686 0.0834 13 6 1.3896 -2.4700 -0.1083 14 6 2.3798 -3.6347 -0.0464 15 6 0.3949 -2.5843 1.0486 16 6 0.6444 -2.5131 -1.4175 17 6 0.8464 -1.5229 -2.3606 18 6 0.1666 -1.5650 -3.5636 19 6 -0.7230 -2.5918 -3.8190 20 6 -1.4688 -2.6344 -5.1278 21 6 -2.9741 -2.5807 -4.8592 22 6 -1.0610 -1.4355 -5.9865 23 6 -1.1285 -3.9303 -5.8668 24 6 -0.9289 -3.5792 -2.8738 25 6 -0.2451 -3.5398 -1.6730 26 1 -0.3634 -0.0610 1.0258 27 1 -0.3633 0.9188 -0.4603 28 1 -0.3632 -0.8581 -0.5657 29 1 4.9952 2.3166 1.0134 30 1 2.9188 -3.6035 0.9005 31 1 1.8377 -4.5770 -0.1247 32 1 3.0884 -3.5532 -0.8707 33 1 -0.3467 -1.7894 0.9701 34 1 -0.1041 -3.5524 1.0044 35 1 0.9268 -2.4927 1.9955 36 1 1.5379 -0.7181 -2.1591 37 1 0.3271 -0.7934 -4.3019 38 1 -3.2165 -1.6576 -4.3327 39 1 -3.5135 -2.6120 -5.8058 40 1 -3.2646 -3.4349 -4.2474 41 1 0.0114 -1.4737 -6.1779 42 1 -1.6001 -1.4665 -6.9333 43 1 -1.3034 -0.5124 -5.4601 44 1 -1.4190 -4.7843 -5.2551 45 1 -1.6676 -3.9608 -6.8136 46 1 -0.0562 -3.9684 -6.0583 47 1 -1.6242 -4.3812 -3.0732 48 1 -0.4064 -4.3110 -0.9342 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438909199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:03 Heat of formation + Delta-G solvation = -17.828754 kcal Electronic energy + Delta-G solvation = -26608.801780 eV Core-core repulsion = 23242.479661 eV Total energy + Delta-G solvation = -3366.322119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00516 -40.28057 -37.79415 -36.48262 -35.37676 -34.04307 -31.96320 -29.99561 -28.90000 -28.23907 -28.01237 -27.54626 -26.88552 -24.41255 -23.36078 -22.30215 -20.84337 -20.00044 -18.93695 -18.03795 -17.33984 -16.67878 -16.26779 -16.10366 -15.80284 -15.46581 -15.17701 -15.07462 -14.72998 -14.49877 -14.48327 -14.21821 -14.10664 -13.92295 -13.60470 -13.39525 -13.18326 -13.11009 -12.93813 -12.80569 -12.67128 -12.61409 -12.47830 -12.39166 -12.23922 -12.11283 -11.90882 -11.82901 -11.65138 -11.34146 -11.30861 -10.75722 -10.24607 -9.72869 -9.58759 -9.29361 -8.47304 -6.15533 0.46055 0.57590 1.18041 1.31402 1.45741 1.96037 2.43067 2.66414 2.87699 3.09226 3.62746 3.69263 3.83371 3.92098 4.09092 4.17348 4.20179 4.25150 4.32483 4.45617 4.49763 4.61053 4.65440 4.69950 4.71290 4.79630 4.84737 4.85482 4.86658 4.93527 4.96101 4.98985 5.07897 5.09230 5.09662 5.16284 5.22618 5.25031 5.32513 5.33837 5.42504 5.52582 5.64999 5.68446 5.78475 5.82275 5.83089 6.17534 6.74988 6.90628 7.34032 7.90422 8.62204 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.004743 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.401062 B = 5901.484653 C = 6464.077154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.473 5.473 3 C -0.358 4.358 4 H 0.066 0.934 5 C 0.052 3.948 6 N -0.905 5.905 7 Si 0.954 3.046 8 H -0.277 1.277 9 H -0.301 1.301 10 H -0.262 1.262 11 C 0.455 3.545 12 O -0.593 6.593 13 C -0.037 4.037 14 C -0.114 4.114 15 C -0.154 4.154 16 C -0.077 4.077 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.071 4.071 20 C -0.028 4.028 21 C -0.135 4.135 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.102 4.102 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.092 0.908 29 H 0.272 0.728 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.152 0.848 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.089 -16.113 -8.680 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.194 5.194 3 C -0.485 4.485 4 H 0.084 0.916 5 C -0.153 4.153 6 N -0.542 5.542 7 Si 0.783 3.217 8 H -0.204 1.204 9 H -0.230 1.230 10 H -0.186 1.186 11 C 0.246 3.754 12 O -0.478 6.478 13 C -0.040 4.040 14 C -0.172 4.172 15 C -0.210 4.210 16 C -0.077 4.077 17 C -0.148 4.148 18 C -0.146 4.146 19 C -0.071 4.071 20 C -0.028 4.028 21 C -0.192 4.192 22 C -0.204 4.204 23 C -0.193 4.193 24 C -0.128 4.128 25 C -0.119 4.119 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.124 0.876 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.063 0.937 47 H 0.170 0.830 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.372 -15.974 -8.620 25.125 hybrid contribution 1.265 0.843 0.773 1.706 sum -16.106 -15.131 -7.847 23.451 Atomic orbital electron populations 1.22367 0.80427 1.03244 1.01548 1.43646 1.06023 1.04077 1.65653 1.18741 1.10364 0.92356 1.27020 0.91581 1.25893 0.94172 0.95488 0.99753 1.69896 1.08073 1.38068 1.38146 0.85708 0.78938 0.79167 0.77917 1.20353 1.23015 1.18595 1.21117 0.87865 0.86615 0.79789 1.90491 1.16456 1.87048 1.53835 1.19720 0.96177 0.92478 0.95637 1.21599 0.97752 0.96553 1.01259 1.22304 0.98341 1.05479 0.94918 1.19414 0.98167 0.96310 0.93828 1.21267 0.99943 0.98599 0.94957 1.21181 0.97602 0.99584 0.96241 1.20042 0.96206 0.94266 0.96560 1.19540 0.95534 0.96694 0.91025 1.21868 0.92765 1.02197 1.02338 1.21980 1.01138 0.97332 0.99931 1.21876 1.01174 0.95721 1.00484 1.21192 1.00022 0.98891 0.92663 1.21125 0.95270 0.97337 0.98198 0.92268 0.92049 0.88937 0.91895 0.93643 0.88287 0.94360 0.90074 0.87625 0.93726 0.89359 0.86217 0.93360 0.91124 0.91357 0.93348 0.90930 0.93046 0.91385 0.91043 0.93736 0.83041 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.49 7.92 127.77 1.01 3.50 16 2 N -0.47 -23.33 1.58 -658.89 -1.04 -24.38 16 3 C -0.36 -21.33 9.68 84.04 0.81 -20.52 16 4 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 5 C 0.05 3.24 4.69 84.93 0.40 3.64 16 6 N -0.90 -58.96 13.96 21.66 0.30 -58.66 16 7 Si 0.95 52.38 25.14 68.60 1.72 54.10 16 8 H -0.28 -16.13 6.26 99.48 0.62 -15.51 16 9 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 10 H -0.26 -13.28 7.11 99.48 0.71 -12.57 16 11 C 0.45 22.22 3.57 87.66 0.31 22.54 16 12 O -0.59 -34.90 11.31 -3.06 -0.03 -34.93 16 13 C -0.04 -1.30 0.59 -53.67 -0.03 -1.33 16 14 C -0.11 -3.79 7.65 71.98 0.55 -3.24 16 15 C -0.15 -4.31 7.76 71.98 0.56 -3.75 16 16 C -0.08 -2.37 3.09 -19.87 -0.06 -2.43 16 17 C -0.13 -4.63 7.31 22.27 0.16 -4.47 16 18 C -0.13 -3.77 8.98 22.27 0.20 -3.57 16 19 C -0.07 -1.58 4.76 -19.87 -0.09 -1.68 16 20 C -0.03 -0.47 0.85 -52.93 -0.05 -0.52 16 21 C -0.13 -1.83 8.29 71.98 0.60 -1.24 16 22 C -0.15 -2.63 7.13 71.98 0.51 -2.12 16 23 C -0.14 -1.92 8.29 71.98 0.60 -1.32 16 24 C -0.11 -2.13 8.71 22.27 0.19 -1.94 16 25 C -0.10 -2.24 8.83 22.27 0.20 -2.05 16 26 H 0.06 2.00 7.05 -2.39 -0.02 1.99 16 27 H 0.06 2.26 8.01 -2.39 -0.02 2.24 16 28 H 0.09 3.00 3.63 -2.38 -0.01 2.99 16 29 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 30 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 31 H 0.10 2.32 7.92 -2.39 -0.02 2.30 16 32 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 33 H 0.08 2.20 4.20 -2.39 -0.01 2.19 16 34 H 0.11 2.01 7.13 -2.39 -0.02 2.00 16 35 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.09 4.07 5.85 -2.91 -0.02 4.05 16 37 H 0.12 3.46 5.90 -2.91 -0.02 3.45 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.78 7.39 -2.38 -0.02 0.76 16 41 H 0.05 0.96 7.51 -2.38 -0.02 0.95 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.00 7.51 -2.39 -0.02 0.99 16 44 H 0.07 0.82 7.39 -2.39 -0.02 0.80 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 46 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.15 1.94 7.10 -2.91 -0.02 1.92 16 48 H 0.15 2.38 7.17 -2.91 -0.02 2.36 16 Total: -1.00 -77.88 355.75 7.67 -70.20 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.85 Total: 14.15 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 5.87 Total: -20.49 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -0.74 Total: -83.04 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.03 Total: -34.93 kcal Atomic # 14 Polarization: 52.38 SS G_CDS: 1.72 Total: 54.10 kcal Total: -77.88 7.67 -70.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438909199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.375 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds