Wall clock time and date at job start Tue Mar 31 2020 08:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 110.67668 * 2 1 4 4 C 1.54998 * 110.61794 * 237.03105 * 2 1 3 5 5 C 1.54808 * 102.09394 * 278.52256 * 4 2 1 6 6 H 1.09003 * 110.59696 * 97.85350 * 5 4 2 7 7 N 1.46901 * 110.48944 * 220.44181 * 5 4 2 8 8 C 1.46898 * 110.99980 * 269.76982 * 7 5 4 9 9 C 1.50704 * 109.46905 * 180.02562 * 8 7 5 10 10 C 1.38638 * 119.74972 * 269.72848 * 9 8 7 11 11 C 1.37614 * 120.25024 * 179.72286 * 10 9 8 12 12 C 1.40721 * 119.73988 * 0.56869 * 11 10 9 13 13 C 1.41396 * 120.24218 * 179.68373 * 12 11 10 14 14 H 1.08001 * 120.00564 * 209.27123 * 13 12 11 15 15 C 1.39947 * 120.00141 * 29.26666 * 13 12 11 16 16 N 1.30824 * 119.99793 * 11.05950 * 15 13 12 17 17 Si 1.86802 * 120.00338 * 191.05507 * 15 13 12 18 18 H 1.48497 * 109.47141 * 60.00038 * 17 15 13 19 19 H 1.48496 * 109.47123 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46922 * 300.00249 * 17 15 13 21 21 C 1.40714 * 119.51501 * 359.70684 * 12 11 10 22 22 C 1.37615 * 119.74495 * 359.97438 * 21 12 11 23 23 C 1.54092 * 104.19048 * 339.12080 * 5 4 2 24 24 C 1.53004 * 109.88039 * 117.39077 * 23 5 4 25 25 C 1.52998 * 109.88363 * 238.54222 * 23 5 4 26 26 O 1.43742 * 107.29437 * 357.97017 * 23 5 4 27 27 H 1.08997 * 109.47344 * 286.60462 * 1 2 3 28 28 H 1.09003 * 109.46722 * 46.61028 * 1 2 3 29 29 H 1.09003 * 109.46868 * 166.60296 * 1 2 3 30 30 H 1.09005 * 109.47166 * 181.50728 * 3 2 1 31 31 H 1.09000 * 109.46927 * 301.50455 * 3 2 1 32 32 H 1.08999 * 109.47335 * 61.50944 * 3 2 1 33 33 H 1.09005 * 110.90501 * 160.32461 * 4 2 1 34 34 H 1.08999 * 110.90945 * 36.72723 * 4 2 1 35 35 H 1.00896 * 110.99937 * 33.72193 * 7 5 4 36 36 H 1.09006 * 109.47186 * 299.99751 * 8 7 5 37 37 H 1.09001 * 109.47374 * 60.00111 * 8 7 5 38 38 H 1.07999 * 119.87365 * 359.97249 * 10 9 8 39 39 H 1.08001 * 120.13152 * 180.27712 * 11 10 9 40 40 H 0.97002 * 119.99831 * 179.97438 * 16 15 13 41 41 H 1.07996 * 120.12466 * 180.02562 * 21 12 11 42 42 H 1.07997 * 119.87744 * 179.97438 * 22 21 12 43 43 H 1.09000 * 109.46671 * 66.47613 * 24 23 5 44 44 H 1.09002 * 109.47081 * 186.46941 * 24 23 5 45 45 H 1.09003 * 109.46980 * 306.47200 * 24 23 5 46 46 H 1.09000 * 109.46635 * 59.99676 * 25 23 5 47 47 H 1.09001 * 109.47719 * 179.97438 * 25 23 5 48 48 H 1.08997 * 109.47314 * 300.00299 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4314 0.0000 4 6 2.0758 -0.7895 -1.2171 5 6 1.9800 -2.2536 -0.7234 6 1 1.0728 -2.7265 -1.0994 7 7 3.1655 -3.0150 -1.1392 8 6 2.9544 -3.6435 -2.4501 9 6 4.1885 -4.4144 -2.8421 10 6 5.1901 -3.7873 -3.5671 11 6 6.3239 -4.4798 -3.9256 12 6 6.4590 -5.8330 -3.5638 13 6 7.6165 -6.5566 -3.9325 14 1 7.5576 -7.6223 -4.0971 15 6 8.8386 -5.8917 -4.0840 16 7 8.9643 -4.6538 -3.6799 17 14 10.2904 -6.7719 -4.8632 18 1 9.9345 -7.1874 -6.2437 19 1 11.4588 -5.8564 -4.9070 20 1 10.6322 -7.9717 -4.0578 21 6 5.4335 -6.4609 -2.8330 22 6 4.3114 -5.7469 -2.4795 23 6 1.9283 -2.1319 0.8118 24 6 0.5994 -2.6827 1.3329 25 6 3.0941 -2.9028 1.4345 26 8 2.0384 -0.7354 1.1338 27 1 -0.3634 0.2937 0.9848 28 1 -0.3633 0.7060 -0.7468 29 1 -0.3633 -0.9997 -0.2381 30 1 3.1597 1.4086 -0.0270 31 1 1.6960 1.9609 -0.8762 32 1 1.7399 1.9444 0.9032 33 1 3.1102 -0.5162 -1.4258 34 1 1.4490 -0.6331 -2.0950 35 1 3.9870 -2.4293 -1.1472 36 1 2.1042 -4.3234 -2.3944 37 1 2.7551 -2.8728 -3.1947 38 1 5.0818 -2.7501 -3.8481 39 1 7.1049 -3.9881 -4.4866 40 1 9.8115 -4.1932 -3.7846 41 1 5.5271 -7.4988 -2.5498 42 1 3.5228 -6.2268 -1.9189 43 1 0.5560 -3.7570 1.1534 44 1 0.5206 -2.4898 2.4028 45 1 -0.2251 -2.1939 0.8138 46 1 4.0363 -2.4912 1.0725 47 1 3.0514 -2.8120 2.5199 48 1 3.0254 -3.9539 1.1545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444645153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:24 Heat of formation + Delta-G solvation = -36.545858 kcal Electronic energy + Delta-G solvation = -25196.811924 eV Core-core repulsion = 21829.678170 eV Total energy + Delta-G solvation = -3367.133754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53545 -37.73560 -35.56169 -34.07158 -33.51084 -31.70998 -30.20749 -29.28233 -28.39791 -28.02659 -26.66707 -25.87785 -23.41049 -22.42918 -20.99553 -20.46815 -19.94319 -19.40635 -17.26478 -16.34416 -15.71557 -15.33832 -15.11122 -14.85543 -14.59220 -14.04980 -13.81483 -13.63934 -13.34633 -13.12848 -13.01714 -12.87368 -12.46291 -12.30496 -12.21613 -12.02856 -11.93385 -11.82480 -11.71821 -11.64803 -11.44030 -11.21851 -11.08237 -10.96850 -10.78547 -10.72970 -10.53450 -10.33220 -10.28314 -9.66085 -9.53456 -9.36303 -9.18027 -8.02301 -7.44560 -7.23503 -6.69463 -4.35774 2.75572 3.06980 3.08695 3.10490 3.18391 3.73765 3.95332 4.32782 4.55949 4.64178 4.72574 4.80359 4.98891 5.02192 5.15517 5.26256 5.38608 5.41516 5.46400 5.60009 5.62685 5.67532 5.70225 5.80079 5.80384 5.85779 5.91266 6.00184 6.02454 6.05742 6.14441 6.19125 6.27254 6.31878 6.35886 6.42054 6.67390 6.94501 7.10707 7.11198 7.27168 7.38043 7.40110 7.62832 7.71457 7.88466 8.06915 8.13090 8.32228 8.65651 8.91796 8.98484 10.25032 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.002923 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.117292 B = 9577.596618 C = 9896.786913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 C -0.138 4.138 4 C -0.175 4.175 5 C 0.065 3.935 6 H 0.085 0.915 7 N -0.668 5.668 8 C 0.124 3.876 9 C -0.209 4.209 10 C -0.098 4.098 11 C -0.158 4.158 12 C 0.113 3.887 13 C -0.466 4.466 14 H 0.075 0.925 15 C 0.074 3.926 16 N -0.802 5.802 17 Si 0.910 3.090 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 C -0.223 4.223 22 C -0.071 4.071 23 C 0.105 3.895 24 C -0.168 4.168 25 C -0.119 4.119 26 O -0.362 6.362 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.345 0.655 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.082 0.918 39 H 0.117 0.883 40 H 0.279 0.721 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 8.755 5.507 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.059 3.941 3 C -0.195 4.195 4 C -0.214 4.214 5 C -0.047 4.047 6 H 0.103 0.897 7 N -0.299 5.299 8 C -0.004 4.004 9 C -0.210 4.210 10 C -0.117 4.117 11 C -0.177 4.177 12 C 0.110 3.890 13 C -0.496 4.496 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.428 5.428 17 Si 0.735 3.265 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.191 1.191 21 C -0.243 4.243 22 C -0.090 4.090 23 C 0.065 3.935 24 C -0.225 4.225 25 C -0.176 4.176 26 O -0.282 6.282 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.100 0.900 39 H 0.135 0.865 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.105 0.895 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.235 8.453 6.070 16.836 hybrid contribution 0.720 0.404 -1.063 1.346 sum -12.515 8.857 5.007 16.129 Atomic orbital electron populations 1.22432 0.95168 1.02510 1.02483 1.22330 0.93112 0.92814 0.85850 1.21736 1.01834 0.93785 1.02134 1.23930 1.02343 0.96846 0.98299 1.22965 0.95525 0.91603 0.94573 0.89651 1.60773 1.03657 1.35485 1.29972 1.20603 0.96675 0.95540 0.87546 1.18909 0.97491 0.94802 1.09815 1.20534 0.94604 0.97145 0.99425 1.21298 0.96694 0.95942 1.03800 1.17629 0.91428 0.92111 0.87820 1.19550 0.92572 0.95791 1.41663 0.90653 1.25876 1.00400 0.94780 0.93208 1.69787 1.26609 1.11213 1.35195 0.86344 0.79761 0.79938 0.80494 1.18962 1.20395 1.19077 1.21035 0.97440 0.99253 1.06573 1.20329 0.96637 0.93615 0.98429 1.22101 0.95872 0.81849 0.93636 1.22475 0.96883 1.01403 1.01737 1.21575 0.96943 1.00633 0.98493 1.88947 1.83716 1.16789 1.38720 0.91749 0.91897 0.91580 0.91763 0.91446 0.91994 0.90281 0.90588 0.83553 0.92116 0.96312 0.89976 0.86512 0.90988 0.89090 0.89478 0.91567 0.92132 0.92028 0.91957 0.93761 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 7.97 37.16 0.30 -1.26 16 2 C 0.10 1.09 1.25 -89.57 -0.11 0.98 16 3 C -0.14 -1.34 8.99 37.15 0.33 -1.00 16 4 C -0.17 -2.03 5.73 -24.72 -0.14 -2.17 16 5 C 0.06 0.82 2.48 -66.19 -0.16 0.66 16 6 H 0.09 1.05 7.37 -51.93 -0.38 0.67 16 7 N -0.67 -10.21 4.48 -106.38 -0.48 -10.69 16 8 C 0.12 2.07 5.66 -4.97 -0.03 2.04 16 9 C -0.21 -4.37 5.42 -104.32 -0.56 -4.93 16 10 C -0.10 -2.22 9.67 -39.66 -0.38 -2.61 16 11 C -0.16 -4.06 8.66 -38.87 -0.34 -4.39 16 12 C 0.11 2.99 5.54 -106.82 -0.59 2.40 16 13 C -0.47 -12.40 9.06 -37.74 -0.34 -12.74 16 14 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 15 C 0.07 1.87 5.24 -17.34 -0.09 1.77 16 16 N -0.80 -20.87 10.89 55.55 0.61 -20.26 16 17 Si 0.91 18.84 29.57 -169.99 -5.03 13.81 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 C -0.22 -5.47 9.80 -38.87 -0.38 -5.85 16 22 C -0.07 -1.57 9.67 -39.66 -0.38 -1.96 16 23 C 0.11 1.34 1.14 -90.05 -0.10 1.24 16 24 C -0.17 -1.83 8.30 37.16 0.31 -1.53 16 25 C -0.12 -1.64 7.89 37.16 0.29 -1.35 16 26 O -0.36 -4.89 10.35 -35.23 -0.36 -5.26 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.07 0.60 5.18 -51.93 -0.27 0.34 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.99 7.48 -51.93 -0.39 0.60 16 34 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.34 5.62 7.73 -39.29 -0.30 5.31 16 36 H 0.06 0.97 8.01 -51.93 -0.42 0.56 16 37 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 16 38 H 0.08 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.12 3.12 6.27 -52.49 -0.33 2.79 16 40 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 41 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 42 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.61 4.99 -51.93 -0.26 0.35 16 46 H 0.06 0.94 7.51 -51.93 -0.39 0.55 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 1.14 7.89 -51.93 -0.41 0.74 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -26.88 373.07 -10.21 -37.09 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.18 Total: 10.37 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -2.39 Total: -30.69 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.13 Total: -30.95 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.36 Total: -5.26 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.88 -10.21 -37.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444645153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.546 kcal (2) G-P(sol) polarization free energy of solvation -26.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds