Wall clock time and date at job start Tue Mar 31 2020 08:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 110.67668 * 2 1 4 4 C 1.54998 * 110.61794 * 237.03105 * 2 1 3 5 5 C 1.54808 * 102.09394 * 278.52256 * 4 2 1 6 6 H 1.09003 * 110.59696 * 97.85350 * 5 4 2 7 7 N 1.46901 * 110.48944 * 220.44181 * 5 4 2 8 8 C 1.46898 * 110.99980 * 269.76982 * 7 5 4 9 9 C 1.50704 * 109.46905 * 180.02562 * 8 7 5 10 10 C 1.38638 * 119.74972 * 269.72848 * 9 8 7 11 11 C 1.37614 * 120.25024 * 179.72286 * 10 9 8 12 12 C 1.40721 * 119.73988 * 0.56869 * 11 10 9 13 13 C 1.41396 * 120.24218 * 179.68373 * 12 11 10 14 14 H 1.08001 * 120.00564 * 209.27123 * 13 12 11 15 15 C 1.39947 * 120.00141 * 29.26666 * 13 12 11 16 16 N 1.30824 * 119.99793 * 11.05950 * 15 13 12 17 17 Si 1.86802 * 120.00338 * 191.05507 * 15 13 12 18 18 H 1.48497 * 109.47141 * 60.00038 * 17 15 13 19 19 H 1.48496 * 109.47123 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46922 * 300.00249 * 17 15 13 21 21 C 1.40714 * 119.51501 * 359.70684 * 12 11 10 22 22 C 1.37615 * 119.74495 * 359.97438 * 21 12 11 23 23 C 1.54092 * 104.19048 * 339.12080 * 5 4 2 24 24 C 1.53004 * 109.88039 * 117.39077 * 23 5 4 25 25 C 1.52998 * 109.88363 * 238.54222 * 23 5 4 26 26 O 1.43742 * 107.29437 * 357.97017 * 23 5 4 27 27 H 1.08997 * 109.47344 * 286.60462 * 1 2 3 28 28 H 1.09003 * 109.46722 * 46.61028 * 1 2 3 29 29 H 1.09003 * 109.46868 * 166.60296 * 1 2 3 30 30 H 1.09005 * 109.47166 * 181.50728 * 3 2 1 31 31 H 1.09000 * 109.46927 * 301.50455 * 3 2 1 32 32 H 1.08999 * 109.47335 * 61.50944 * 3 2 1 33 33 H 1.09005 * 110.90501 * 160.32461 * 4 2 1 34 34 H 1.08999 * 110.90945 * 36.72723 * 4 2 1 35 35 H 1.00896 * 110.99937 * 33.72193 * 7 5 4 36 36 H 1.09006 * 109.47186 * 299.99751 * 8 7 5 37 37 H 1.09001 * 109.47374 * 60.00111 * 8 7 5 38 38 H 1.07999 * 119.87365 * 359.97249 * 10 9 8 39 39 H 1.08001 * 120.13152 * 180.27712 * 11 10 9 40 40 H 0.97002 * 119.99831 * 179.97438 * 16 15 13 41 41 H 1.07996 * 120.12466 * 180.02562 * 21 12 11 42 42 H 1.07997 * 119.87744 * 179.97438 * 22 21 12 43 43 H 1.09000 * 109.46671 * 66.47613 * 24 23 5 44 44 H 1.09002 * 109.47081 * 186.46941 * 24 23 5 45 45 H 1.09003 * 109.46980 * 306.47200 * 24 23 5 46 46 H 1.09000 * 109.46635 * 59.99676 * 25 23 5 47 47 H 1.09001 * 109.47719 * 179.97438 * 25 23 5 48 48 H 1.08997 * 109.47314 * 300.00299 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0702 1.4314 0.0000 4 6 2.0758 -0.7895 -1.2171 5 6 1.9800 -2.2536 -0.7234 6 1 1.0728 -2.7265 -1.0994 7 7 3.1655 -3.0150 -1.1392 8 6 2.9544 -3.6435 -2.4501 9 6 4.1885 -4.4144 -2.8421 10 6 5.1901 -3.7873 -3.5671 11 6 6.3239 -4.4798 -3.9256 12 6 6.4590 -5.8330 -3.5638 13 6 7.6165 -6.5566 -3.9325 14 1 7.5576 -7.6223 -4.0971 15 6 8.8386 -5.8917 -4.0840 16 7 8.9643 -4.6538 -3.6799 17 14 10.2904 -6.7719 -4.8632 18 1 9.9345 -7.1874 -6.2437 19 1 11.4588 -5.8564 -4.9070 20 1 10.6322 -7.9717 -4.0578 21 6 5.4335 -6.4609 -2.8330 22 6 4.3114 -5.7469 -2.4795 23 6 1.9283 -2.1319 0.8118 24 6 0.5994 -2.6827 1.3329 25 6 3.0941 -2.9028 1.4345 26 8 2.0384 -0.7354 1.1338 27 1 -0.3634 0.2937 0.9848 28 1 -0.3633 0.7060 -0.7468 29 1 -0.3633 -0.9997 -0.2381 30 1 3.1597 1.4086 -0.0270 31 1 1.6960 1.9609 -0.8762 32 1 1.7399 1.9444 0.9032 33 1 3.1102 -0.5162 -1.4258 34 1 1.4490 -0.6331 -2.0950 35 1 3.9870 -2.4293 -1.1472 36 1 2.1042 -4.3234 -2.3944 37 1 2.7551 -2.8728 -3.1947 38 1 5.0818 -2.7501 -3.8481 39 1 7.1049 -3.9881 -4.4866 40 1 9.8115 -4.1932 -3.7846 41 1 5.5271 -7.4988 -2.5498 42 1 3.5228 -6.2268 -1.9189 43 1 0.5560 -3.7570 1.1534 44 1 0.5206 -2.4898 2.4028 45 1 -0.2251 -2.1939 0.8138 46 1 4.0363 -2.4912 1.0725 47 1 3.0514 -2.8120 2.5199 48 1 3.0254 -3.9539 1.1545 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444645153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:23 Heat of formation + Delta-G solvation = -49.509700 kcal Electronic energy + Delta-G solvation = -25197.374078 eV Core-core repulsion = 21829.678170 eV Total energy + Delta-G solvation = -3367.695908 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.49328 -39.50896 -36.87710 -35.43857 -34.81999 -32.94179 -31.63658 -31.12512 -29.64006 -28.92730 -27.62244 -27.37187 -24.88380 -23.55918 -22.85163 -21.64359 -21.37909 -20.43647 -19.18102 -17.50547 -17.03335 -16.68354 -16.15523 -16.00442 -15.91334 -15.60297 -15.40648 -14.90599 -14.60423 -14.19148 -14.12153 -13.98865 -13.77680 -13.72702 -13.46813 -13.24354 -13.04668 -12.95408 -12.87953 -12.82072 -12.70247 -12.64299 -12.60357 -12.31286 -12.11769 -12.03278 -11.69367 -11.62937 -11.38179 -11.24903 -11.19716 -11.02543 -10.56734 -9.36937 -9.22917 -9.05505 -8.56949 -6.33712 0.96843 1.18203 1.37664 1.49026 1.51957 2.22095 2.73350 2.84313 3.27124 3.64964 3.75538 3.81721 3.97208 4.05561 4.14135 4.16765 4.32863 4.35739 4.42492 4.49183 4.59630 4.62952 4.69063 4.72281 4.80691 4.81514 4.85617 4.87335 4.92778 4.98851 5.03260 5.07159 5.10950 5.18999 5.19914 5.27562 5.33591 5.39900 5.43138 5.49972 5.55011 5.74799 5.96996 6.13189 6.18012 6.21802 6.27205 6.43410 6.47680 6.73767 6.97698 7.06624 8.39386 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025585 B = 0.002923 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.117292 B = 9577.596618 C = 9896.786913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.094 3.906 3 C -0.138 4.138 4 C -0.172 4.172 5 C 0.067 3.933 6 H 0.098 0.902 7 N -0.674 5.674 8 C 0.132 3.868 9 C -0.191 4.191 10 C -0.101 4.101 11 C -0.182 4.182 12 C 0.078 3.922 13 C -0.506 4.506 14 H 0.072 0.928 15 C 0.032 3.968 16 N -0.835 5.835 17 Si 0.982 3.018 18 H -0.260 1.260 19 H -0.269 1.269 20 H -0.261 1.261 21 C -0.239 4.239 22 C -0.074 4.074 23 C 0.104 3.896 24 C -0.163 4.163 25 C -0.116 4.116 26 O -0.383 6.383 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.337 0.663 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.285 0.715 41 H 0.093 0.907 42 H 0.114 0.886 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 9.494 5.565 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 C -0.195 4.195 4 C -0.211 4.211 5 C -0.044 4.044 6 H 0.116 0.884 7 N -0.304 5.304 8 C 0.004 3.996 9 C -0.193 4.193 10 C -0.120 4.120 11 C -0.201 4.201 12 C 0.076 3.924 13 C -0.536 4.536 14 H 0.090 0.910 15 C -0.181 4.181 16 N -0.462 5.462 17 Si 0.803 3.197 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.186 1.186 21 C -0.259 4.259 22 C -0.093 4.093 23 C 0.065 3.935 24 C -0.221 4.221 25 C -0.174 4.174 26 O -0.304 6.304 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.156 0.844 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.287 9.197 6.136 18.867 hybrid contribution 1.204 0.261 -0.994 1.583 sum -14.083 9.458 5.142 17.727 Atomic orbital electron populations 1.22401 0.93426 1.03219 1.03159 1.22546 0.94429 0.92925 0.84655 1.21766 1.01064 0.93410 1.03239 1.23894 1.02018 0.96012 0.99204 1.23003 0.94619 0.92108 0.94645 0.88369 1.60679 1.04499 1.36264 1.28941 1.20519 0.94674 0.95809 0.88575 1.19364 0.98149 0.94663 1.07116 1.20786 0.94020 0.98037 0.99139 1.21255 0.97626 0.96158 1.05078 1.17962 0.92420 0.92918 0.89100 1.19797 0.93829 0.95947 1.44045 0.90990 1.26713 1.02822 0.95489 0.93119 1.69859 1.27611 1.12607 1.36166 0.85250 0.76197 0.78778 0.79435 1.18478 1.19292 1.18575 1.21234 0.98092 0.99740 1.06800 1.20651 0.96452 0.94110 0.98064 1.22109 0.96198 0.81713 0.93516 1.22437 0.96133 1.01626 1.01868 1.21521 0.96785 1.00261 0.98835 1.88929 1.84302 1.17181 1.39941 0.91710 0.90144 0.91319 0.93048 0.89521 0.91674 0.91578 0.88983 0.84399 0.90515 0.95030 0.87943 0.88505 0.90474 0.88845 0.86769 0.91216 0.92130 0.90601 0.93869 0.93397 0.90970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 7.97 71.98 0.57 -1.92 16 2 C 0.09 1.84 1.25 -10.11 -0.01 1.83 16 3 C -0.14 -2.40 8.99 71.98 0.65 -1.76 16 4 C -0.17 -3.56 5.73 31.90 0.18 -3.38 16 5 C 0.07 1.53 2.48 45.90 0.11 1.65 16 6 H 0.10 2.04 7.37 -2.39 -0.02 2.02 16 7 N -0.67 -19.28 4.48 -490.46 -2.20 -21.48 16 8 C 0.13 4.04 5.66 85.56 0.48 4.53 16 9 C -0.19 -7.74 5.42 -19.67 -0.11 -7.85 16 10 C -0.10 -4.56 9.67 22.22 0.21 -4.34 16 11 C -0.18 -9.63 8.66 22.73 0.20 -9.44 16 12 C 0.08 4.30 5.54 -21.29 -0.12 4.18 16 13 C -0.51 -28.06 9.06 23.46 0.21 -27.84 16 14 H 0.07 3.85 7.87 -2.91 -0.02 3.83 16 15 C 0.03 1.64 5.24 85.26 0.45 2.09 16 16 N -0.84 -44.99 10.89 21.83 0.24 -44.75 16 17 Si 0.98 39.38 29.57 68.60 2.03 41.41 16 18 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 19 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 20 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 21 C -0.24 -11.90 9.80 22.73 0.22 -11.68 16 22 C -0.07 -3.20 9.67 22.22 0.21 -2.98 16 23 C 0.10 2.47 1.14 -10.42 -0.01 2.46 16 24 C -0.16 -3.16 8.30 71.98 0.60 -2.56 16 25 C -0.12 -3.14 7.89 71.98 0.57 -2.57 16 26 O -0.38 -9.76 10.35 -148.98 -1.54 -11.30 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 29 H 0.07 1.00 5.18 -2.39 -0.01 0.99 16 30 H 0.05 1.01 8.13 -2.38 -0.02 1.00 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.55 7.48 -2.38 -0.02 1.53 16 34 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.34 10.64 7.73 -89.70 -0.69 9.95 16 36 H 0.08 2.16 8.01 -2.38 -0.02 2.14 16 37 H 0.03 0.91 8.08 -2.39 -0.02 0.89 16 38 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 39 H 0.10 5.44 6.27 -2.91 -0.02 5.42 16 40 H 0.28 13.97 8.30 -92.71 -0.77 13.21 16 41 H 0.09 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.11 4.26 8.06 -2.91 -0.02 4.24 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.24 4.99 -2.39 -0.01 1.23 16 46 H 0.04 1.30 7.51 -2.39 -0.02 1.28 16 47 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 2.02 7.89 -2.39 -0.02 2.00 16 Total: -1.00 -59.72 373.07 3.19 -56.53 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: 0.24 Total: 39.17 kcal Atomic # 6 Polarization: -64.01 SS G_CDS: 4.43 Total: -59.58 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -1.96 Total: -66.23 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.54 Total: -11.30 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Total: -59.72 3.19 -56.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444645153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.019 kcal (2) G-P(sol) polarization free energy of solvation -59.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds