Wall clock time and date at job start Tue Mar 31 2020 08:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53006 * 109.47282 * 2 1 4 4 C 1.52995 * 109.47101 * 175.42952 * 3 2 1 5 5 C 1.53001 * 109.91021 * 63.74014 * 4 3 2 6 6 O 1.42907 * 109.46933 * 294.42317 * 5 4 3 7 7 C 1.53997 * 109.91667 * 302.63517 * 4 3 2 8 8 C 1.54603 * 105.13891 * 241.87272 * 7 4 3 9 9 C 1.54930 * 102.92146 * 21.95874 * 8 7 4 10 10 N 1.47902 * 109.91791 * 185.04683 * 4 3 2 11 11 C 1.46898 * 110.99937 * 333.50837 * 10 4 3 12 12 C 1.50699 * 109.47356 * 169.99982 * 11 10 4 13 13 C 1.38642 * 119.74706 * 269.73116 * 12 11 10 14 14 C 1.37616 * 120.24696 * 179.72100 * 13 12 11 15 15 C 1.40720 * 119.74398 * 0.56572 * 14 13 12 16 16 C 1.41399 * 120.24495 * 179.67938 * 15 14 13 17 17 H 1.08000 * 119.99818 * 209.00360 * 16 15 14 18 18 C 1.39939 * 119.99587 * 29.00510 * 16 15 14 19 19 N 1.30827 * 120.00196 * 10.39740 * 18 16 15 20 20 Si 1.86806 * 119.99743 * 190.39221 * 18 16 15 21 21 H 1.48496 * 109.46911 * 60.00242 * 20 18 16 22 22 H 1.48499 * 109.47034 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47126 * 299.99886 * 20 18 16 24 24 C 1.40718 * 119.50899 * 359.70901 * 15 14 13 25 25 C 1.37614 * 119.74763 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47704 * 59.99408 * 1 2 3 27 27 H 1.08997 * 109.47630 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47339 * 299.99583 * 1 2 3 29 29 H 1.09004 * 109.47339 * 240.00417 * 2 1 3 30 30 H 1.09000 * 109.47704 * 120.00592 * 2 1 3 31 31 H 1.08997 * 109.46459 * 55.42992 * 3 2 1 32 32 H 1.08996 * 109.46819 * 295.43194 * 3 2 1 33 33 H 1.08997 * 109.47040 * 54.41864 * 5 4 3 34 34 H 1.09001 * 109.47261 * 174.42501 * 5 4 3 35 35 H 0.96694 * 113.99834 * 179.97438 * 6 5 4 36 36 H 1.09000 * 110.30926 * 0.79310 * 7 4 3 37 37 H 1.09005 * 110.31047 * 122.86353 * 7 4 3 38 38 H 1.09001 * 110.71951 * 140.32039 * 8 7 4 39 39 H 1.09005 * 110.72170 * 263.41884 * 8 7 4 40 40 H 1.09002 * 110.66787 * 81.02096 * 9 8 7 41 41 H 1.08999 * 110.66705 * 204.14783 * 9 8 7 42 42 H 1.08993 * 109.47023 * 290.00356 * 11 10 4 43 43 H 1.09001 * 109.47056 * 49.99736 * 11 10 4 44 44 H 1.07997 * 119.87822 * 359.97120 * 13 12 11 45 45 H 1.07998 * 120.13303 * 180.27351 * 14 13 12 46 46 H 0.97000 * 119.99587 * 179.97438 * 19 18 16 47 47 H 1.07999 * 120.12350 * 179.97438 * 24 15 14 48 48 H 1.08000 * 119.87573 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5656 1.4440 0.1149 5 6 4.1814 0.7740 -1.1150 6 8 3.8216 -0.6089 -1.1343 7 6 3.9963 0.6964 1.3905 8 6 4.7319 1.7516 2.2481 9 6 4.1830 3.0909 1.6955 10 7 4.0603 2.8324 0.2379 11 6 3.1291 3.7804 -0.3882 12 6 3.5324 5.1887 -0.0345 13 6 3.0102 5.7892 1.1007 14 6 3.3759 7.0727 1.4366 15 6 4.2742 7.7800 0.6162 16 6 4.6519 9.1017 0.9476 17 1 4.9253 9.7968 0.1676 18 6 4.6714 9.5089 2.2863 19 7 4.5408 8.6242 3.2412 20 14 4.8840 11.3159 2.7098 21 1 3.7720 12.0983 2.1130 22 1 4.8715 11.4832 4.1853 23 1 6.1783 11.8023 2.1680 24 6 4.7934 7.1624 -0.5367 25 6 4.4188 5.8757 -0.8495 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6113 1.9794 0.8462 32 1 1.7450 1.9321 -0.9281 33 1 3.8092 1.2589 -2.0174 34 1 5.2667 0.8665 -1.0740 35 1 4.1780 -1.0975 -1.8888 36 1 3.1222 0.3197 1.9216 37 1 4.6683 -0.1243 1.1393 38 1 4.4789 1.6365 3.3020 39 1 5.8100 1.6838 2.1021 40 1 3.2089 3.3159 2.1297 41 1 4.8862 3.9021 1.8845 42 1 3.1567 3.6556 -1.4706 43 1 2.1187 3.5901 -0.0263 44 1 2.3170 5.2464 1.7261 45 1 2.9714 7.5371 2.3237 46 1 4.5547 8.9066 4.1691 47 1 5.4832 7.6962 -1.1735 48 1 4.8157 5.3999 -1.7341 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000444773577.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:42 Heat of formation + Delta-G solvation = -35.460956 kcal Electronic energy + Delta-G solvation = -25635.053411 eV Core-core repulsion = 22267.966702 eV Total energy + Delta-G solvation = -3367.086709 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10947 -37.57959 -36.32627 -34.26229 -33.81153 -32.16846 -30.40500 -29.32534 -29.18659 -26.41999 -26.02568 -24.70140 -23.34386 -21.79471 -21.24014 -20.47315 -19.69777 -18.33469 -17.29928 -17.23171 -15.80525 -15.66815 -15.27683 -15.08823 -14.64905 -14.08580 -13.96222 -13.79386 -13.46983 -13.23848 -12.75099 -12.72391 -12.33689 -12.29448 -12.11980 -11.93241 -11.81414 -11.49921 -11.46205 -11.20531 -11.09891 -10.91482 -10.87171 -10.74565 -10.55704 -10.40887 -10.35972 -10.28420 -10.02484 -9.65939 -9.54336 -9.32173 -9.17793 -7.96783 -7.42670 -7.20620 -6.68452 -4.35232 2.75848 3.07143 3.09307 3.10554 3.18319 3.92132 3.96055 4.59660 4.72862 4.83386 4.92149 5.01976 5.19301 5.27983 5.35844 5.42612 5.49883 5.58174 5.65782 5.70566 5.78532 5.83467 5.85018 5.93344 5.96195 6.00601 6.07768 6.11925 6.17076 6.28057 6.33889 6.37263 6.41191 6.47249 6.49258 6.57886 6.60377 6.95027 7.11054 7.25351 7.37210 7.40146 7.49462 7.60506 7.64368 7.89447 8.07638 8.14285 8.32874 8.66414 8.92517 8.99230 10.25428 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.025634 B = 0.003231 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.046503 B = 8665.196378 C = 8717.536722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.130 4.130 4 C 0.094 3.906 5 C 0.098 3.902 6 O -0.566 6.566 7 C -0.113 4.113 8 C -0.130 4.130 9 C 0.051 3.949 10 N -0.502 5.502 11 C 0.105 3.895 12 C -0.206 4.206 13 C -0.096 4.096 14 C -0.158 4.158 15 C 0.112 3.888 16 C -0.465 4.465 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.803 5.803 20 Si 0.910 3.090 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.224 4.224 25 C -0.074 4.074 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.371 0.629 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.118 0.882 46 H 0.279 0.721 47 H 0.090 0.910 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -14.978 -3.856 15.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.169 4.169 4 C 0.005 3.995 5 C 0.020 3.980 6 O -0.371 6.371 7 C -0.151 4.151 8 C -0.168 4.168 9 C -0.077 4.077 10 N -0.226 5.226 11 C -0.021 4.021 12 C -0.208 4.208 13 C -0.115 4.115 14 C -0.177 4.177 15 C 0.110 3.890 16 C -0.495 4.495 17 H 0.093 0.907 18 C -0.142 4.142 19 N -0.429 5.429 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.243 4.243 25 C -0.093 4.093 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.218 0.782 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.781 -14.750 -3.317 15.372 hybrid contribution -0.323 0.741 0.179 0.828 sum -3.103 -14.009 -3.138 14.687 Atomic orbital electron populations 1.21821 0.97060 1.00888 1.01291 1.21721 0.94139 0.96551 1.03787 1.22148 0.95474 0.97516 1.01728 1.21703 0.92832 0.90349 0.94666 1.21961 0.98327 0.80796 0.96915 1.86519 1.77117 1.22101 1.51333 1.22437 1.00156 0.97845 0.94686 1.22566 1.00448 0.95068 0.98702 1.23084 1.00202 0.97298 0.87098 1.64799 1.45454 0.99675 1.12667 1.21020 0.93092 0.90152 0.97863 1.18920 1.07233 0.94682 0.99959 1.20540 0.99576 0.95735 0.95656 1.21325 1.00004 0.94439 1.01934 1.17625 0.88441 0.92734 0.90247 1.19549 1.40654 0.96932 0.92410 0.90695 1.25867 0.92706 0.99404 0.96271 1.69784 1.36982 1.35089 1.01041 0.86346 0.79842 0.82625 0.77722 1.18968 1.20398 1.19101 1.21024 1.05655 0.95487 1.02160 1.20333 0.96853 0.94467 0.97610 0.93202 0.93247 0.93371 0.89435 0.92228 0.92295 0.91814 0.93987 0.93017 0.78231 0.91483 0.91026 0.91590 0.91206 0.93935 0.89300 0.91970 0.94488 0.90010 0.86393 0.91017 0.89141 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.15 0.37 -1.24 16 2 C -0.12 -1.43 4.86 -26.73 -0.13 -1.56 16 3 C -0.13 -1.70 2.77 -26.73 -0.07 -1.77 16 4 C 0.09 1.28 0.60 -130.53 -0.08 1.20 16 5 C 0.10 1.17 6.09 37.16 0.23 1.40 16 6 O -0.57 -5.63 9.54 -35.23 -0.34 -5.97 16 7 C -0.11 -1.46 5.32 -25.37 -0.14 -1.60 16 8 C -0.13 -1.80 7.06 -24.87 -0.18 -1.97 16 9 C 0.05 0.85 4.96 -1.90 -0.01 0.84 16 10 N -0.50 -8.20 5.02 -216.43 -1.09 -9.28 16 11 C 0.11 1.85 4.19 -4.98 -0.02 1.83 16 12 C -0.21 -4.39 4.61 -104.33 -0.48 -4.87 16 13 C -0.10 -2.19 8.32 -39.66 -0.33 -2.52 16 14 C -0.16 -4.05 8.66 -38.87 -0.34 -4.39 16 15 C 0.11 2.98 5.55 -106.82 -0.59 2.38 16 16 C -0.47 -12.40 9.06 -37.74 -0.34 -12.75 16 17 H 0.07 1.92 7.87 -52.49 -0.41 1.51 16 18 C 0.07 1.86 5.26 -17.34 -0.09 1.77 16 19 N -0.80 -20.83 10.84 55.55 0.60 -20.23 16 20 Si 0.91 18.87 29.57 -169.99 -5.03 13.84 16 21 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.22 -5.50 9.80 -38.87 -0.38 -5.88 16 25 C -0.07 -1.65 9.67 -39.66 -0.38 -2.03 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.01 5.63 -51.93 -0.29 0.72 16 30 H 0.06 0.71 6.16 -51.93 -0.32 0.39 16 31 H 0.06 0.84 7.47 -51.93 -0.39 0.45 16 32 H 0.06 0.86 6.97 -51.93 -0.36 0.50 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.37 2.13 9.12 45.56 0.42 2.55 16 36 H 0.07 0.84 6.14 -51.93 -0.32 0.52 16 37 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.74 7.09 -51.93 -0.37 0.37 16 41 H 0.09 1.75 7.74 -51.93 -0.40 1.35 16 42 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 43 H 0.04 0.63 5.55 -51.93 -0.29 0.35 16 44 H 0.08 1.72 7.39 -52.49 -0.39 1.34 16 45 H 0.12 3.16 6.23 -52.49 -0.33 2.84 16 46 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 47 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 48 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -27.33 363.12 -10.53 -37.86 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.19 Total: 9.45 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -2.97 Total: -31.15 kcal Atomic # 7 Polarization: -29.03 SS G_CDS: -0.48 Total: -29.51 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.34 Total: -5.97 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.33 -10.53 -37.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444773577.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.402 kcal (2) G-P(sol) polarization free energy of solvation -27.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds