Wall clock time and date at job start Tue Mar 31 2020 09:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47050 * 2 1 4 4 C 1.53000 * 109.47456 * 239.99591 * 2 1 3 5 5 C 1.53006 * 109.47242 * 119.99894 * 2 1 3 6 6 H 1.09006 * 109.50486 * 299.91720 * 5 2 1 7 7 C 1.53097 * 109.50916 * 179.78456 * 5 2 1 8 8 N 1.47012 * 109.25547 * 183.21717 * 7 5 2 9 9 C 1.46899 * 110.99872 * 182.39536 * 8 7 5 10 10 C 1.50699 * 109.47356 * 190.00059 * 9 8 7 11 11 C 1.38639 * 119.74647 * 269.72133 * 10 9 8 12 12 C 1.37619 * 120.24486 * 179.76190 * 11 10 9 13 13 C 1.40712 * 119.74747 * 0.48540 * 12 11 10 14 14 C 1.41397 * 120.24523 * 179.78693 * 13 12 11 15 15 H 1.07997 * 119.99747 * 150.21788 * 14 13 12 16 16 C 1.39939 * 119.99998 * 330.22812 * 14 13 12 17 17 N 1.30822 * 120.00292 * 161.72865 * 16 14 13 18 18 Si 1.86802 * 119.99957 * 341.71427 * 16 14 13 19 19 H 1.48504 * 109.46827 * 95.41904 * 18 16 14 20 20 H 1.48497 * 109.47526 * 215.41545 * 18 16 14 21 21 H 1.48497 * 109.47409 * 335.42148 * 18 16 14 22 22 C 1.40712 * 119.51124 * 359.76805 * 13 12 11 23 23 C 1.37620 * 119.74811 * 0.02562 * 22 13 12 24 24 C 1.47101 * 110.78004 * 58.61593 * 8 7 5 25 25 C 1.53102 * 109.20803 * 301.40982 * 24 8 7 26 26 O 1.43012 * 109.50659 * 59.99777 * 5 2 1 27 27 H 1.09000 * 109.47535 * 300.00163 * 1 2 3 28 28 H 1.08996 * 109.46819 * 60.00172 * 1 2 3 29 29 H 1.08997 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47041 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47169 * 299.99613 * 3 2 1 32 32 H 1.09000 * 109.47460 * 60.00242 * 3 2 1 33 33 H 1.08997 * 109.47266 * 300.00260 * 4 2 1 34 34 H 1.09005 * 109.46827 * 60.00142 * 4 2 1 35 35 H 1.08999 * 109.47338 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.50476 * 303.14902 * 7 5 2 37 37 H 1.08998 * 109.50328 * 63.23820 * 7 5 2 38 38 H 1.09005 * 109.46831 * 309.99884 * 9 8 7 39 39 H 1.08998 * 109.47164 * 69.99542 * 9 8 7 40 40 H 1.08000 * 119.87440 * 359.97438 * 11 10 9 41 41 H 1.07998 * 120.12275 * 180.28055 * 12 11 10 42 42 H 0.96997 * 120.00088 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.13025 * 180.02562 * 22 13 12 44 44 H 1.07999 * 119.88191 * 179.97438 * 23 22 13 45 45 H 1.08998 * 109.57053 * 181.47169 * 24 8 7 46 46 H 1.09003 * 109.49964 * 61.30824 * 24 8 7 47 47 H 1.08998 * 109.50647 * 296.87402 * 25 24 8 48 48 H 1.09001 * 109.50680 * 176.78133 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 1 1.6782 -0.2069 2.1397 7 6 3.5710 -0.7264 1.2474 8 7 4.0547 -1.4869 2.4089 9 6 5.5220 -1.4685 2.4762 10 6 5.9893 -2.4488 3.5211 11 6 6.1590 -2.0288 4.8314 12 6 6.5806 -2.9165 5.7948 13 6 6.8494 -4.2523 5.4436 14 6 7.2875 -5.1721 6.4241 15 1 7.0463 -6.2204 6.3271 16 6 8.0332 -4.7242 7.5202 17 7 8.1357 -5.4697 8.5903 18 14 8.8829 -3.0619 7.4551 19 1 8.0149 -2.0372 8.0891 20 1 10.1740 -3.1369 8.1849 21 1 9.1351 -2.6898 6.0398 22 6 6.6787 -4.6661 4.1096 23 6 6.2521 -3.7623 3.1635 24 6 3.5459 -2.8668 2.3779 25 6 2.0152 -2.8391 2.3679 26 8 1.5637 -2.0697 1.2501 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2075 -2.1392 35 1 3.1301 -0.7217 -1.2489 36 1 3.9322 -1.1929 0.3309 37 1 3.9384 0.2982 1.3037 38 1 5.9337 -1.7476 1.5062 39 1 5.8611 -0.4669 2.7402 40 1 5.9564 -1.0019 5.0976 41 1 6.7079 -2.5882 6.8158 42 1 8.6529 -5.1593 9.3499 43 1 6.8817 -5.6891 3.8291 44 1 6.1207 -4.0774 2.1389 45 1 3.8944 -3.4043 3.2597 46 1 3.9067 -3.3675 1.4794 47 1 1.6533 -2.3866 3.2912 48 1 1.6333 -3.8569 2.2873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447844052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:05 Heat of formation + Delta-G solvation = -51.606969 kcal Electronic energy + Delta-G solvation = -25417.384454 eV Core-core repulsion = 22049.597601 eV Total energy + Delta-G solvation = -3367.786853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15278 -39.77386 -37.60996 -36.63512 -35.37662 -32.73164 -31.61892 -31.17556 -29.55819 -28.16205 -28.07137 -26.81451 -24.96382 -24.44009 -23.26974 -22.03032 -21.16943 -19.77973 -19.35810 -17.60713 -17.32766 -17.18455 -16.52086 -16.14835 -15.98008 -15.70111 -15.56522 -15.32186 -14.99592 -14.71431 -14.58386 -14.39047 -14.24014 -14.08412 -13.70085 -13.25095 -13.12228 -12.99587 -12.95550 -12.67785 -12.63142 -12.58280 -12.28104 -12.15394 -12.02581 -11.92993 -11.69752 -11.56648 -11.48315 -11.41897 -11.10685 -10.99287 -10.49935 -9.51217 -9.47160 -9.14985 -8.91227 -6.50210 0.73476 0.87103 1.25468 1.39249 1.47861 2.11307 2.51117 2.78596 3.00862 3.54532 3.72432 3.85828 4.03400 4.07782 4.10870 4.18067 4.20371 4.27017 4.36220 4.41366 4.48247 4.57621 4.61562 4.65624 4.72833 4.79733 4.81909 4.82600 4.91512 4.95142 4.99319 5.02190 5.05179 5.08775 5.08922 5.12603 5.21298 5.31688 5.34874 5.50452 5.54617 5.60527 5.73070 5.89219 5.97657 6.10480 6.12908 6.25210 6.28538 6.41094 6.73761 6.83264 8.17514 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.003111 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.805253 B = 8997.356960 C = 9284.443640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.137 4.137 5 C 0.104 3.896 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.541 5.541 9 C 0.122 3.878 10 C -0.193 4.193 11 C -0.060 4.060 12 C -0.250 4.250 13 C 0.075 3.925 14 C -0.487 4.487 15 H 0.054 0.946 16 C 0.047 3.953 17 N -0.851 5.851 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.253 1.253 22 C -0.221 4.221 23 C -0.068 4.068 24 C 0.025 3.975 25 C 0.067 3.933 26 O -0.387 6.387 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.293 0.707 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.052 0.948 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 13.908 -16.717 24.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.059 4.059 3 C -0.198 4.198 4 C -0.194 4.194 5 C 0.046 3.954 6 H 0.074 0.926 7 C -0.104 4.104 8 N -0.266 5.266 9 C -0.005 4.005 10 C -0.194 4.194 11 C -0.079 4.079 12 C -0.269 4.269 13 C 0.073 3.927 14 C -0.517 4.517 15 H 0.073 0.927 16 C -0.167 4.167 17 N -0.478 5.478 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.205 1.205 21 H -0.176 1.176 22 C -0.240 4.240 23 C -0.087 4.087 24 C -0.104 4.104 25 C -0.010 4.010 26 O -0.306 6.306 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.114 0.886 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.117 0.883 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.244 13.955 -16.187 24.149 hybrid contribution 1.070 -0.653 0.306 1.290 sum -10.174 13.302 -15.881 23.079 Atomic orbital electron populations 1.21763 0.93579 1.01771 1.02024 1.20564 0.96608 0.95486 0.93206 1.21907 1.01436 0.93579 1.02881 1.21838 1.00711 1.00158 0.96682 1.22240 0.91778 0.82979 0.98422 0.92579 1.22958 0.96271 0.99745 0.91397 1.62371 1.09668 1.13230 1.41282 1.20760 0.86155 0.98219 0.95318 1.19337 1.10784 0.94692 0.94593 1.20736 0.96283 0.98292 0.92589 1.21112 1.11999 0.95317 0.98521 1.17860 0.90059 0.92259 0.92542 1.19491 1.31926 0.95719 1.04534 0.92734 1.26822 0.95138 1.02040 0.92716 1.69727 1.33556 1.40503 1.04007 0.85465 0.77453 0.77846 0.80191 1.18453 1.20513 1.17649 1.21150 1.10601 0.99429 0.92817 1.20758 0.97060 0.92949 0.97929 1.22733 0.96203 0.90309 1.01128 1.22664 0.92337 0.96729 0.89247 1.87923 1.72804 1.23583 1.46322 0.92773 0.91392 0.93187 0.92044 0.90815 0.92169 0.93397 0.91467 0.92831 0.93956 0.88573 0.94390 0.89759 0.86310 0.88834 0.89642 0.88297 0.86639 0.90527 0.94851 0.92961 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.33 71.98 0.60 -1.51 16 2 C -0.06 -0.96 0.63 -52.18 -0.03 -0.99 16 3 C -0.14 -1.81 8.13 71.98 0.59 -1.23 16 4 C -0.14 -2.25 7.98 71.98 0.57 -1.68 16 5 C 0.10 2.22 2.06 30.63 0.06 2.28 16 6 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 7 C 0.02 0.53 4.19 86.31 0.36 0.89 16 8 N -0.54 -14.87 4.87 -899.55 -4.38 -19.25 16 9 C 0.12 3.51 5.43 85.56 0.46 3.98 16 10 C -0.19 -7.03 4.17 -19.67 -0.08 -7.11 16 11 C -0.06 -2.43 9.67 22.22 0.21 -2.22 16 12 C -0.25 -11.81 7.18 22.73 0.16 -11.64 16 13 C 0.08 3.85 5.10 -21.29 -0.11 3.74 16 14 C -0.49 -27.66 9.57 23.46 0.22 -27.44 16 15 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 16 C 0.05 2.56 5.40 85.26 0.46 3.02 16 17 N -0.85 -47.38 13.93 21.82 0.30 -47.08 16 18 Si 0.97 43.36 24.52 68.60 1.68 45.05 16 19 H -0.26 -11.02 6.71 99.48 0.67 -10.35 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.25 -11.52 6.86 99.48 0.68 -10.84 16 22 C -0.22 -10.07 9.80 22.73 0.22 -9.85 16 23 C -0.07 -2.63 7.82 22.22 0.17 -2.46 16 24 C 0.02 0.70 4.65 86.30 0.40 1.10 16 25 C 0.07 1.70 7.01 72.02 0.50 2.21 16 26 O -0.39 -9.62 9.12 -148.98 -1.36 -10.98 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.93 7.68 -2.39 -0.02 0.91 16 30 H 0.06 0.77 6.51 -2.39 -0.02 0.76 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 34 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.05 0.89 6.36 -2.39 -0.02 0.88 16 36 H 0.04 0.96 6.27 -2.39 -0.01 0.94 16 37 H 0.10 1.85 6.62 -2.39 -0.02 1.83 16 38 H 0.04 1.03 8.02 -2.38 -0.02 1.01 16 39 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 40 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 41 H 0.09 4.47 4.73 -2.91 -0.01 4.45 16 42 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 43 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.08 2.60 5.92 -2.39 -0.01 2.58 16 46 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -59.31 361.90 1.89 -57.42 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.85 Total: 23.75 kcal Atomic # 6 Polarization: -53.69 SS G_CDS: 4.79 Total: -48.90 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -4.08 Total: -66.33 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.36 Total: -10.98 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.68 Total: 45.05 kcal Total: -59.31 1.89 -57.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447844052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.813 kcal (2) G-P(sol) polarization free energy of solvation -59.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds