Wall clock time and date at job start Tue Mar 31 2020 09:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47218 * 2 1 4 4 C 1.52998 * 109.47330 * 239.99426 * 2 1 3 5 5 C 1.53001 * 109.47208 * 120.00012 * 2 1 3 6 6 H 1.08997 * 109.54647 * 180.10715 * 5 2 1 7 7 C 1.53103 * 109.50270 * 300.21707 * 5 2 1 8 8 N 1.47018 * 109.25428 * 176.77893 * 7 5 2 9 9 C 1.46903 * 110.99754 * 177.60668 * 8 7 5 10 10 C 1.50699 * 109.46977 * 189.68688 * 9 8 7 11 11 C 1.38635 * 119.75470 * 90.00207 * 10 9 8 12 12 C 1.37611 * 120.25212 * 180.02562 * 11 10 9 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.47012 * 110.75734 * 301.38197 * 8 7 5 25 25 C 1.53096 * 109.25427 * 58.61651 * 24 8 7 26 26 O 1.43018 * 109.50503 * 59.99619 * 5 2 1 27 27 H 1.09004 * 109.47036 * 300.00074 * 1 2 3 28 28 H 1.08998 * 109.46891 * 59.99969 * 1 2 3 29 29 H 1.08999 * 109.47538 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47497 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47215 * 299.99832 * 3 2 1 32 32 H 1.09004 * 109.47178 * 60.00013 * 3 2 1 33 33 H 1.08999 * 109.47310 * 300.00751 * 4 2 1 34 34 H 1.09011 * 109.46877 * 60.00166 * 4 2 1 35 35 H 1.08999 * 109.47623 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.50757 * 56.85132 * 7 5 2 37 37 H 1.08999 * 109.50726 * 296.71622 * 7 5 2 38 38 H 1.08993 * 109.47077 * 69.68489 * 9 8 7 39 39 H 1.09004 * 109.47115 * 309.68454 * 9 8 7 40 40 H 1.07996 * 119.87152 * 359.97438 * 11 10 9 41 41 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 42 42 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 43 43 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 44 44 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 45 45 H 1.09001 * 109.50944 * 178.54708 * 24 8 7 46 46 H 1.09000 * 109.50780 * 298.68397 * 24 8 7 47 47 H 1.09006 * 109.50609 * 63.09078 * 25 24 8 48 48 H 1.08999 * 109.51145 * 183.16874 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7203 1.2514 7 6 1.5256 -0.0032 2.4998 8 7 1.9541 -0.7443 3.6951 9 6 1.5285 -0.0567 4.9215 10 6 2.1812 -0.7067 6.1141 11 6 3.4118 -0.2491 6.5594 12 6 4.0172 -0.8355 7.6472 13 6 3.3822 -1.9031 8.3083 14 6 3.9946 -2.5131 9.4273 15 1 5.0674 -2.4734 9.5442 16 6 3.2104 -3.1683 10.3835 17 7 1.9601 -2.8221 10.5527 18 14 3.9488 -4.5370 11.4183 19 1 2.9188 -5.0647 12.3489 20 1 5.0949 -4.0047 12.1981 21 1 4.4194 -5.6301 10.5302 22 6 2.1358 -2.3627 7.8444 23 6 1.5461 -1.7575 6.7581 24 6 1.4479 -2.1241 3.6620 25 6 1.9630 -2.8207 2.3998 26 8 1.5636 -2.0698 1.2500 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7210 -1.2494 36 1 0.4369 0.0429 2.4711 37 1 1.9327 1.0073 2.5326 38 1 0.4450 -0.1242 5.0185 39 1 1.8242 0.9913 4.8717 40 1 3.8974 0.5701 6.0502 41 1 4.9761 -0.4778 7.9921 42 1 1.5995 -2.0584 10.0757 43 1 1.6417 -3.1843 8.3416 44 1 0.5875 -2.1055 6.4030 45 1 1.7983 -2.6616 4.5431 46 1 0.3580 -2.1118 3.6519 47 1 3.0508 -2.8809 2.4354 48 1 1.5448 -3.8257 2.3422 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447844056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:08 Heat of formation + Delta-G solvation = -58.997837 kcal Electronic energy + Delta-G solvation = -25297.428050 eV Core-core repulsion = 21929.320706 eV Total energy + Delta-G solvation = -3368.107345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.14773 -39.73301 -37.68539 -36.73552 -35.52690 -32.17293 -31.50246 -31.13614 -29.27039 -28.18345 -28.05999 -26.82981 -25.01771 -24.61945 -22.99278 -21.99778 -21.35019 -19.85230 -19.78278 -17.42761 -17.26976 -16.73073 -16.50953 -16.26622 -15.99796 -15.74231 -15.57530 -15.32121 -15.03271 -14.66530 -14.43468 -14.38381 -14.23874 -13.94548 -13.63128 -13.24983 -13.05063 -12.96743 -12.73869 -12.71140 -12.57299 -12.53964 -12.30139 -12.15248 -11.99079 -11.96294 -11.64363 -11.54771 -11.46474 -11.34574 -11.13874 -10.86910 -10.54616 -9.61254 -9.45910 -9.25732 -9.14071 -6.45236 0.85809 0.96164 1.49358 1.61592 1.78706 2.32446 2.57978 2.74323 2.98178 3.59103 3.69594 3.82684 3.97004 4.05222 4.08608 4.15188 4.18132 4.23303 4.34753 4.40097 4.48694 4.53798 4.57274 4.61919 4.69110 4.78834 4.79619 4.85362 4.85971 4.91907 4.92345 4.98962 5.06727 5.10006 5.11503 5.19016 5.24107 5.32512 5.43969 5.48376 5.52295 5.73866 5.79558 5.82651 5.94067 6.09237 6.14324 6.23974 6.26151 6.41412 6.80465 6.94554 8.03561 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.031744 B = 0.002890 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.847080 B = 9685.370131 C = 9940.743864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.141 4.141 4 C -0.134 4.134 5 C 0.104 3.896 6 H 0.055 0.945 7 C 0.024 3.976 8 N -0.541 5.541 9 C 0.127 3.873 10 C -0.201 4.201 11 C -0.059 4.059 12 C -0.246 4.246 13 C 0.071 3.929 14 C -0.562 4.562 15 H 0.069 0.931 16 C 0.004 3.996 17 N -0.819 5.819 18 Si 1.116 2.884 19 H -0.271 1.271 20 H -0.258 1.258 21 H -0.265 1.265 22 C -0.237 4.237 23 C -0.074 4.074 24 C 0.022 3.978 25 C 0.070 3.930 26 O -0.386 6.386 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.283 0.717 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.051 0.949 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 4.823 -19.137 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.058 4.058 3 C -0.198 4.198 4 C -0.191 4.191 5 C 0.047 3.953 6 H 0.073 0.927 7 C -0.104 4.104 8 N -0.266 5.266 9 C 0.000 4.000 10 C -0.203 4.203 11 C -0.078 4.078 12 C -0.265 4.265 13 C 0.068 3.932 14 C -0.591 4.591 15 H 0.087 0.913 16 C -0.212 4.212 17 N -0.443 5.443 18 Si 0.932 3.068 19 H -0.195 1.195 20 H -0.182 1.182 21 H -0.189 1.189 22 C -0.256 4.256 23 C -0.093 4.093 24 C -0.107 4.107 25 C -0.007 4.007 26 O -0.305 6.305 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.102 0.898 40 H 0.134 0.866 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.091 0.909 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.223 3.651 -18.137 18.634 hybrid contribution -0.362 1.159 -0.405 1.280 sum -2.585 4.810 -18.542 19.330 Atomic orbital electron populations 1.21836 0.93958 1.01666 1.01908 1.20563 0.96499 0.95588 0.93190 1.21911 1.01392 0.93637 1.02898 1.21762 1.00747 1.00230 0.96353 1.22240 0.97310 0.81764 0.94032 0.92682 1.22964 0.98816 0.98710 0.89881 1.62257 1.60080 1.02191 1.02026 1.20653 0.95728 0.97135 0.86472 1.19214 0.97770 1.02518 1.00753 1.20678 0.94299 0.98204 0.94619 1.21122 1.02282 1.00671 1.02457 1.17985 0.92212 0.90234 0.92723 1.20755 0.96586 1.34218 1.07517 0.91311 1.28405 0.93804 1.01288 0.97676 1.70573 1.15612 1.23030 1.35061 0.83031 0.75971 0.72814 0.74939 1.19527 1.18194 1.18938 1.21057 0.99742 1.03547 1.01303 1.20654 0.97974 0.95774 0.94861 1.22726 0.97329 0.90820 0.99775 1.22635 0.99332 0.95214 0.83563 1.87920 1.76280 1.23863 1.42399 0.92948 0.91346 0.93319 0.92213 0.90665 0.92180 0.93102 0.91286 0.92795 0.93980 0.88726 0.95211 0.89845 0.86557 0.88834 0.90534 0.89750 0.87992 0.90909 0.94823 0.93041 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.98 71.98 0.57 -1.78 16 2 C -0.06 -1.01 0.63 -52.18 -0.03 -1.05 16 3 C -0.14 -1.99 8.13 71.98 0.59 -1.40 16 4 C -0.13 -2.19 8.33 71.98 0.60 -1.59 16 5 C 0.10 2.38 2.07 30.63 0.06 2.44 16 6 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 7 C 0.02 0.57 4.21 86.32 0.36 0.94 16 8 N -0.54 -16.32 4.72 -899.76 -4.25 -20.57 16 9 C 0.13 4.11 5.11 85.56 0.44 4.55 16 10 C -0.20 -8.22 4.91 -19.67 -0.10 -8.32 16 11 C -0.06 -2.56 9.67 22.22 0.21 -2.35 16 12 C -0.25 -12.20 9.80 22.73 0.22 -11.98 16 13 C 0.07 3.87 5.30 -21.29 -0.11 3.76 16 14 C -0.56 -31.13 8.98 23.46 0.21 -30.92 16 15 H 0.07 3.73 7.96 -2.91 -0.02 3.71 16 16 C 0.00 0.21 4.93 85.26 0.42 0.63 16 17 N -0.82 -45.22 12.32 21.83 0.27 -44.95 16 18 Si 1.12 44.04 30.00 68.60 2.06 46.10 16 19 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 C -0.24 -12.37 7.96 22.73 0.18 -12.19 16 23 C -0.07 -3.31 7.88 22.22 0.18 -3.14 16 24 C 0.02 0.66 5.26 86.31 0.45 1.12 16 25 C 0.07 1.83 7.01 72.01 0.50 2.33 16 26 O -0.39 -9.94 9.13 -148.98 -1.36 -11.30 16 27 H 0.05 0.93 6.36 -2.38 -0.02 0.91 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.98 7.68 -2.39 -0.02 0.96 16 30 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.85 6.51 -2.38 -0.02 0.83 16 33 H 0.05 0.96 7.68 -2.39 -0.02 0.95 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 1.03 6.27 -2.39 -0.01 1.01 16 37 H 0.09 2.04 6.57 -2.39 -0.02 2.02 16 38 H 0.03 0.95 8.06 -2.39 -0.02 0.93 16 39 H 0.08 2.44 7.98 -2.38 -0.02 2.42 16 40 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 41 H 0.09 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.28 16.21 6.70 -92.71 -0.62 15.59 16 43 H 0.08 4.66 6.50 -2.91 -0.02 4.64 16 44 H 0.10 4.14 8.00 -2.91 -0.02 4.12 16 45 H 0.07 2.57 6.00 -2.39 -0.01 2.55 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -59.87 367.31 2.55 -57.32 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 1.06 Total: 32.34 kcal Atomic # 6 Polarization: -63.70 SS G_CDS: 4.76 Total: -58.94 kcal Atomic # 7 Polarization: -61.54 SS G_CDS: -3.98 Total: -65.52 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.36 Total: -11.30 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.06 Total: 46.10 kcal Total: -59.87 2.55 -57.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447844056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.673 kcal (2) G-P(sol) polarization free energy of solvation -59.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds