Wall clock time and date at job start Tue Mar 31 2020 08:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47346 * 2 1 4 4 C 1.38172 * 119.97046 * 264.72696 * 3 2 1 5 5 C 1.38709 * 119.94642 * 180.30133 * 4 3 2 6 6 O 1.35897 * 120.05633 * 180.02562 * 5 4 3 7 7 C 1.42902 * 116.99856 * 179.97438 * 6 5 4 8 8 C 1.38752 * 119.88722 * 359.97438 * 5 4 3 9 9 C 1.38125 * 119.94624 * 359.97438 * 8 5 4 10 10 C 1.38245 * 119.97683 * 84.99789 * 3 2 1 11 11 C 1.50703 * 119.94030 * 359.72481 * 10 3 2 12 12 N 1.46899 * 109.46878 * 80.00198 * 11 10 3 13 13 C 1.46902 * 110.99561 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.43721 * 327.54271 * 13 12 11 15 15 C 1.54271 * 110.48571 * 90.22449 * 13 12 11 16 16 C 1.53880 * 106.59509 * 142.28624 * 15 13 12 17 17 C 1.54262 * 106.60034 * 359.97438 * 16 15 13 18 18 H 1.09000 * 110.48569 * 95.07347 * 17 16 15 19 19 C 1.50700 * 110.48679 * 217.70991 * 17 16 15 20 20 H 1.08008 * 120.00002 * 114.77649 * 19 17 16 21 21 C 1.37878 * 120.00373 * 294.77794 * 19 17 16 22 22 N 1.31511 * 120.00464 * 179.97438 * 21 19 17 23 23 Si 1.86808 * 119.99625 * 0.02562 * 21 19 17 24 24 H 1.48495 * 109.47258 * 89.99966 * 23 21 19 25 25 H 1.48503 * 109.46893 * 209.99994 * 23 21 19 26 26 H 1.48501 * 109.47005 * 329.99679 * 23 21 19 27 27 C 1.54884 * 104.19619 * 336.38879 * 17 16 15 28 28 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46700 * 300.00009 * 1 2 3 30 30 H 1.08991 * 109.47418 * 60.00268 * 1 2 3 31 31 H 1.08998 * 109.47369 * 239.99802 * 2 1 3 32 32 H 1.09008 * 109.47489 * 119.99643 * 2 1 3 33 33 H 1.08002 * 120.02512 * 0.25017 * 4 3 2 34 34 H 1.08994 * 109.47339 * 59.99919 * 7 6 5 35 35 H 1.09007 * 109.46922 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.47162 * 299.99476 * 7 6 5 37 37 H 1.07999 * 120.02772 * 180.02562 * 8 5 4 38 38 H 1.07998 * 119.97441 * 179.97438 * 9 8 5 39 39 H 1.08998 * 109.46657 * 200.00153 * 11 10 3 40 40 H 1.08998 * 109.46963 * 320.00117 * 11 10 3 41 41 H 1.00898 * 111.00148 * 56.04426 * 12 11 10 42 42 H 1.08999 * 110.03407 * 261.57027 * 15 13 12 43 43 H 1.08994 * 110.03003 * 23.00306 * 15 13 12 44 44 H 1.09004 * 110.03029 * 240.71363 * 16 15 13 45 45 H 1.09000 * 110.07357 * 119.31031 * 16 15 13 46 46 H 0.97003 * 120.00369 * 180.02562 * 22 21 19 47 47 H 1.08997 * 110.76105 * 279.62904 * 27 17 16 48 48 H 1.08999 * 110.91302 * 156.33201 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3662 2.0349 -1.1919 5 6 2.8345 3.3405 -1.1907 6 8 3.1629 3.9468 -2.3618 7 6 3.6378 5.2925 -2.2847 8 6 2.9659 4.0268 0.0080 9 6 2.6299 3.4089 1.1967 10 6 2.1642 2.1068 1.1930 11 6 1.7993 1.4346 2.4915 12 7 2.8996 0.5585 2.9154 13 6 2.5787 -0.1146 4.1811 14 1 1.9559 0.5259 4.8056 15 6 1.8751 -1.4611 3.9132 16 6 2.4022 -2.4499 4.9679 17 6 3.4081 -1.6699 5.8394 18 1 2.9186 -1.2822 6.7328 19 6 4.5735 -2.5487 6.2144 20 1 5.5635 -2.3177 5.8496 21 6 4.3760 -3.6477 7.0233 22 7 5.3929 -4.4149 7.3502 23 14 2.6636 -4.0476 7.6538 24 1 1.9781 -4.9448 6.6894 25 1 2.7669 -4.7240 8.9718 26 1 1.8848 -2.7919 7.8016 27 6 3.8768 -0.5070 4.9300 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.2633 1.4984 -2.1236 34 1 4.5405 5.3248 -1.6748 35 1 3.8637 5.6560 -3.2872 36 1 2.8716 5.9228 -1.8334 37 1 3.3299 5.0436 0.0115 38 1 2.7325 3.9425 2.1300 39 1 1.6227 2.1918 3.2554 40 1 0.8955 0.8414 2.3521 41 1 3.7641 1.0736 2.9891 42 1 0.7961 -1.3456 4.0160 43 1 2.1193 -1.8173 2.9125 44 1 2.9021 -3.2860 4.4789 45 1 1.5795 -2.8150 5.5827 46 1 5.2539 -5.1883 7.9190 47 1 4.6394 -0.8474 4.2296 48 1 4.2464 0.3278 5.5254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449446662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:33 Heat of formation + Delta-G solvation = -31.822524 kcal Electronic energy + Delta-G solvation = -24742.425749 eV Core-core repulsion = 21375.496814 eV Total energy + Delta-G solvation = -3366.928935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45133 -38.58956 -37.62484 -34.50281 -33.87522 -32.24634 -30.83161 -29.52616 -28.34438 -27.90392 -26.87621 -24.49391 -23.79051 -23.17817 -21.85913 -20.51710 -19.55707 -19.08201 -17.86262 -16.79610 -16.61165 -15.97207 -15.71969 -15.38741 -14.81958 -14.78175 -14.69614 -14.01158 -13.91290 -13.51564 -13.37035 -13.11077 -13.01051 -12.65120 -12.56166 -12.34505 -12.14372 -12.02908 -11.81572 -11.51341 -11.15361 -11.04711 -10.88438 -10.82829 -10.69547 -10.51385 -10.30227 -10.02935 -9.92519 -9.63226 -9.34441 -8.91753 -8.89757 -8.50307 -8.27186 -8.08829 -6.02257 -4.00378 1.22917 1.29089 3.04699 3.32743 3.40760 3.42828 3.57173 4.46806 4.50172 4.60924 4.66388 4.81953 4.84563 4.87586 5.06124 5.07186 5.15737 5.20572 5.26077 5.38154 5.39387 5.41683 5.52543 5.60467 5.63079 5.69796 5.77109 5.85687 5.95828 6.07081 6.09645 6.15114 6.23063 6.33888 6.38917 6.45744 6.54222 6.63138 6.68184 6.69075 6.75373 6.87346 7.00601 7.21500 7.21659 7.42284 7.60935 7.66076 7.85178 8.59057 9.02119 9.61108 11.11179 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.002827 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.719864 B = 9901.835492 C =10365.308218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.013 4.013 4 C -0.154 4.154 5 C 0.125 3.875 6 O -0.320 6.320 7 C 0.028 3.972 8 C -0.216 4.216 9 C -0.073 4.073 10 C -0.115 4.115 11 C 0.099 3.901 12 N -0.675 5.675 13 C 0.077 3.923 14 H 0.042 0.958 15 C -0.107 4.107 16 C -0.130 4.130 17 C 0.014 3.986 18 H 0.029 0.971 19 C -0.506 4.506 20 H 0.073 0.927 21 C 0.069 3.931 22 N -0.904 5.904 23 Si 0.879 3.121 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.265 1.265 27 C -0.105 4.105 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.031 0.969 40 H 0.081 0.919 41 H 0.340 0.660 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.038 0.962 46 H 0.262 0.738 47 H 0.072 0.928 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.852 17.784 -17.286 26.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.014 4.014 4 C -0.173 4.173 5 C 0.080 3.920 6 O -0.234 6.234 7 C -0.067 4.067 8 C -0.234 4.234 9 C -0.091 4.091 10 C -0.115 4.115 11 C -0.030 4.030 12 N -0.306 5.306 13 C -0.032 4.032 14 H 0.060 0.940 15 C -0.146 4.146 16 C -0.168 4.168 17 C -0.005 4.005 18 H 0.047 0.953 19 C -0.544 4.544 20 H 0.091 0.909 21 C -0.132 4.132 22 N -0.543 5.543 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.190 1.190 27 C -0.143 4.143 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.158 0.842 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.021 17.016 -17.760 26.198 hybrid contribution -0.671 0.758 1.150 1.532 sum -9.692 17.774 -16.610 26.187 Atomic orbital electron populations 1.21731 0.94981 1.01798 1.01674 1.20705 0.95790 0.92242 1.04514 1.19545 0.94872 0.95767 0.91209 1.20302 1.05417 0.92835 0.98725 1.18991 0.95780 0.92617 0.84592 1.86056 1.80012 1.28436 1.28879 1.23025 0.98799 0.81097 1.03753 1.21117 1.08972 1.01011 0.92322 1.20837 0.96659 0.94324 0.97327 1.19638 1.02992 0.94009 0.94879 1.20906 0.95726 0.94356 0.91979 1.60616 1.04614 1.32969 1.32414 1.22547 0.97986 0.94753 0.87919 0.94047 1.22140 0.97527 0.94817 1.00088 1.22599 0.98381 0.98810 0.97004 1.19886 0.94677 0.92810 0.93169 0.95322 1.21044 0.94488 1.09045 1.29848 0.90921 1.25003 0.96460 0.96037 0.95694 1.69909 1.30528 1.16593 1.37278 0.86898 0.85558 0.78804 0.77934 1.20326 1.22162 1.19024 1.22582 0.95270 0.98446 0.97996 0.92241 0.92617 0.93030 0.91321 0.88052 0.85448 0.92660 0.88400 0.92783 0.85799 0.86058 0.95064 0.90042 0.84176 0.93898 0.91395 0.91424 0.94374 0.92795 0.90980 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.75 37.16 0.36 -1.04 16 2 C -0.10 -1.05 5.40 -27.89 -0.15 -1.20 16 3 C -0.01 -0.16 5.13 -104.64 -0.54 -0.69 16 4 C -0.15 -1.79 9.62 -39.43 -0.38 -2.17 16 5 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16 6 O -0.32 -3.39 10.50 -19.42 -0.20 -3.59 16 7 C 0.03 0.19 9.81 101.05 0.99 1.18 16 8 C -0.22 -2.23 9.04 -39.43 -0.36 -2.58 16 9 C -0.07 -0.78 9.66 -39.60 -0.38 -1.16 16 10 C -0.11 -1.34 5.39 -104.60 -0.56 -1.90 16 11 C 0.10 1.19 4.82 -4.97 -0.02 1.16 16 12 N -0.68 -9.34 5.61 -106.22 -0.60 -9.94 16 13 C 0.08 1.24 3.20 -66.03 -0.21 1.03 16 14 H 0.04 0.66 7.82 -51.93 -0.41 0.25 16 15 C -0.11 -1.85 6.53 -25.61 -0.17 -2.02 16 16 C -0.13 -2.75 4.89 -25.61 -0.13 -2.88 16 17 C 0.01 0.32 2.28 -90.12 -0.21 0.12 16 18 H 0.03 0.68 7.06 -51.93 -0.37 0.32 16 19 C -0.51 -14.17 8.94 -34.44 -0.31 -14.48 16 20 H 0.07 2.21 8.01 -52.48 -0.42 1.79 16 21 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 22 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 23 Si 0.88 21.90 24.88 -169.99 -4.23 17.67 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.27 -6.33 6.41 56.52 0.36 -5.97 16 27 C -0.10 -2.02 5.65 -24.73 -0.14 -2.16 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.55 6.69 -51.93 -0.35 0.20 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.70 8.05 -51.93 -0.42 0.29 16 32 H 0.10 1.28 6.59 -51.92 -0.34 0.94 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 34 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 35 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 37 H 0.12 1.00 6.30 -52.49 -0.33 0.67 16 38 H 0.12 1.11 8.03 -52.49 -0.42 0.69 16 39 H 0.03 0.36 7.93 -51.93 -0.41 -0.05 16 40 H 0.08 0.98 5.83 -51.93 -0.30 0.68 16 41 H 0.34 4.62 8.41 -39.29 -0.33 4.29 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.14 8.04 -51.93 -0.42 0.73 16 44 H 0.07 1.54 7.83 -51.93 -0.41 1.13 16 45 H 0.04 0.81 6.04 -51.93 -0.31 0.49 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 1.46 8.05 -51.93 -0.42 1.04 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -30.64 370.91 -9.38 -40.02 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -8.16 Total: 3.07 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -2.56 Total: -25.73 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.18 Total: -37.04 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.20 Total: -3.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.23 Total: 17.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.64 -9.38 -40.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.201 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds