Wall clock time and date at job start Tue Mar 31 2020 08:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50699 * 109.47346 * 2 1 4 4 C 1.38172 * 119.97046 * 264.72696 * 3 2 1 5 5 C 1.38709 * 119.94642 * 180.30133 * 4 3 2 6 6 O 1.35897 * 120.05633 * 180.02562 * 5 4 3 7 7 C 1.42902 * 116.99856 * 179.97438 * 6 5 4 8 8 C 1.38752 * 119.88722 * 359.97438 * 5 4 3 9 9 C 1.38125 * 119.94624 * 359.97438 * 8 5 4 10 10 C 1.38245 * 119.97683 * 84.99789 * 3 2 1 11 11 C 1.50703 * 119.94030 * 359.72481 * 10 3 2 12 12 N 1.46899 * 109.46878 * 80.00198 * 11 10 3 13 13 C 1.46902 * 110.99561 * 179.97438 * 12 11 10 14 14 H 1.08997 * 110.43721 * 327.54271 * 13 12 11 15 15 C 1.54271 * 110.48571 * 90.22449 * 13 12 11 16 16 C 1.53880 * 106.59509 * 142.28624 * 15 13 12 17 17 C 1.54262 * 106.60034 * 359.97438 * 16 15 13 18 18 H 1.09000 * 110.48569 * 95.07347 * 17 16 15 19 19 C 1.50700 * 110.48679 * 217.70991 * 17 16 15 20 20 H 1.08008 * 120.00002 * 114.77649 * 19 17 16 21 21 C 1.37878 * 120.00373 * 294.77794 * 19 17 16 22 22 N 1.31511 * 120.00464 * 179.97438 * 21 19 17 23 23 Si 1.86808 * 119.99625 * 0.02562 * 21 19 17 24 24 H 1.48495 * 109.47258 * 89.99966 * 23 21 19 25 25 H 1.48503 * 109.46893 * 209.99994 * 23 21 19 26 26 H 1.48501 * 109.47005 * 329.99679 * 23 21 19 27 27 C 1.54884 * 104.19619 * 336.38879 * 17 16 15 28 28 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46700 * 300.00009 * 1 2 3 30 30 H 1.08991 * 109.47418 * 60.00268 * 1 2 3 31 31 H 1.08998 * 109.47369 * 239.99802 * 2 1 3 32 32 H 1.09008 * 109.47489 * 119.99643 * 2 1 3 33 33 H 1.08002 * 120.02512 * 0.25017 * 4 3 2 34 34 H 1.08994 * 109.47339 * 59.99919 * 7 6 5 35 35 H 1.09007 * 109.46922 * 179.97438 * 7 6 5 36 36 H 1.08997 * 109.47162 * 299.99476 * 7 6 5 37 37 H 1.07999 * 120.02772 * 180.02562 * 8 5 4 38 38 H 1.07998 * 119.97441 * 179.97438 * 9 8 5 39 39 H 1.08998 * 109.46657 * 200.00153 * 11 10 3 40 40 H 1.08998 * 109.46963 * 320.00117 * 11 10 3 41 41 H 1.00898 * 111.00148 * 56.04426 * 12 11 10 42 42 H 1.08999 * 110.03407 * 261.57027 * 15 13 12 43 43 H 1.08994 * 110.03003 * 23.00306 * 15 13 12 44 44 H 1.09004 * 110.03029 * 240.71363 * 16 15 13 45 45 H 1.09000 * 110.07357 * 119.31031 * 16 15 13 46 46 H 0.97003 * 120.00369 * 180.02562 * 22 21 19 47 47 H 1.08997 * 110.76105 * 279.62904 * 27 17 16 48 48 H 1.08999 * 110.91302 * 156.33201 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3662 2.0349 -1.1919 5 6 2.8345 3.3405 -1.1907 6 8 3.1629 3.9468 -2.3618 7 6 3.6378 5.2925 -2.2847 8 6 2.9659 4.0268 0.0080 9 6 2.6299 3.4089 1.1967 10 6 2.1642 2.1068 1.1930 11 6 1.7993 1.4346 2.4915 12 7 2.8996 0.5585 2.9154 13 6 2.5787 -0.1146 4.1811 14 1 1.9559 0.5259 4.8056 15 6 1.8751 -1.4611 3.9132 16 6 2.4022 -2.4499 4.9679 17 6 3.4081 -1.6699 5.8394 18 1 2.9186 -1.2822 6.7328 19 6 4.5735 -2.5487 6.2144 20 1 5.5635 -2.3177 5.8496 21 6 4.3760 -3.6477 7.0233 22 7 5.3929 -4.4149 7.3502 23 14 2.6636 -4.0476 7.6538 24 1 1.9781 -4.9448 6.6894 25 1 2.7669 -4.7240 8.9718 26 1 1.8848 -2.7919 7.8016 27 6 3.8768 -0.5070 4.9300 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.2633 1.4984 -2.1236 34 1 4.5405 5.3248 -1.6748 35 1 3.8637 5.6560 -3.2872 36 1 2.8716 5.9228 -1.8334 37 1 3.3299 5.0436 0.0115 38 1 2.7325 3.9425 2.1300 39 1 1.6227 2.1918 3.2554 40 1 0.8955 0.8414 2.3521 41 1 3.7641 1.0736 2.9891 42 1 0.7961 -1.3456 4.0160 43 1 2.1193 -1.8173 2.9125 44 1 2.9021 -3.2860 4.4789 45 1 1.5795 -2.8150 5.5827 46 1 5.2539 -5.1883 7.9190 47 1 4.6394 -0.8474 4.2296 48 1 4.2464 0.3278 5.5254 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449446662.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:32 Heat of formation + Delta-G solvation = -49.752261 kcal Electronic energy + Delta-G solvation = -24743.203241 eV Core-core repulsion = 21375.496814 eV Total energy + Delta-G solvation = -3367.706426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23742 -39.65361 -38.81489 -35.82133 -34.69812 -34.20480 -31.84507 -30.47787 -29.95919 -28.82379 -27.97386 -25.70815 -24.84817 -24.55511 -22.71011 -21.41979 -20.94533 -20.81747 -18.64029 -18.60387 -17.59717 -16.82551 -16.76045 -16.61925 -16.46445 -15.70433 -15.58872 -15.38679 -14.85795 -14.76129 -14.40701 -14.40102 -14.11326 -13.97532 -13.79295 -13.40411 -13.20222 -13.08412 -12.82099 -12.76311 -12.52769 -12.24876 -12.00971 -11.91229 -11.84838 -11.70473 -11.58656 -11.51990 -11.49427 -11.42857 -11.09185 -10.90179 -10.68218 -9.71331 -9.28727 -8.99183 -8.26312 -6.28882 0.41858 0.45558 1.35217 1.37058 1.47774 2.36964 2.39419 2.72631 3.09218 3.43945 3.83037 3.85839 3.91863 4.04038 4.10268 4.19983 4.26314 4.28856 4.34031 4.39660 4.45736 4.59682 4.61811 4.63493 4.70417 4.76339 4.76991 4.81400 4.87376 4.91245 5.00746 5.07897 5.09389 5.17200 5.20811 5.25943 5.29939 5.37102 5.42533 5.47110 5.51318 5.56019 5.68171 5.80666 5.84934 5.88242 6.26796 6.37367 6.48479 6.54550 6.78019 7.36247 8.90866 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.002827 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.719864 B = 9901.835492 C =10365.308218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.021 4.021 4 C -0.171 4.171 5 C 0.117 3.883 6 O -0.338 6.338 7 C 0.019 3.981 8 C -0.217 4.217 9 C -0.075 4.075 10 C -0.126 4.126 11 C 0.104 3.896 12 N -0.677 5.677 13 C 0.093 3.907 14 H 0.057 0.943 15 C -0.099 4.099 16 C -0.128 4.128 17 C 0.006 3.994 18 H 0.029 0.971 19 C -0.511 4.511 20 H 0.029 0.971 21 C 0.008 3.992 22 N -0.955 5.955 23 Si 0.943 3.057 24 H -0.266 1.266 25 H -0.296 1.296 26 H -0.243 1.243 27 C -0.100 4.100 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.061 0.939 35 H 0.117 0.883 36 H 0.065 0.935 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.042 0.958 40 H 0.083 0.917 41 H 0.342 0.658 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.042 0.958 45 H 0.042 0.958 46 H 0.264 0.736 47 H 0.053 0.947 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 19.822 -17.920 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.021 4.021 4 C -0.190 4.190 5 C 0.071 3.929 6 O -0.252 6.252 7 C -0.075 4.075 8 C -0.236 4.236 9 C -0.094 4.094 10 C -0.127 4.127 11 C -0.024 4.024 12 N -0.308 5.308 13 C -0.016 4.016 14 H 0.075 0.925 15 C -0.138 4.138 16 C -0.166 4.166 17 C -0.013 4.013 18 H 0.047 0.953 19 C -0.549 4.549 20 H 0.047 0.953 21 C -0.188 4.188 22 N -0.596 5.596 23 Si 0.768 3.232 24 H -0.192 1.192 25 H -0.223 1.223 26 H -0.166 1.166 27 C -0.138 4.138 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.161 0.839 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.454 19.087 -18.418 28.892 hybrid contribution 0.234 0.202 1.259 1.296 sum -11.219 19.289 -17.159 28.149 Atomic orbital electron populations 1.21696 0.93929 1.02250 1.01854 1.20664 0.96690 0.91868 1.03800 1.19654 0.95031 0.96045 0.91418 1.20448 1.06120 0.93452 0.98934 1.19174 0.95623 0.92741 0.85313 1.86035 1.80079 1.30299 1.28805 1.23312 0.99305 0.79458 1.05414 1.21370 1.08463 1.01970 0.91791 1.21080 0.95955 0.94102 0.98223 1.19667 1.03898 0.94559 0.94583 1.20885 0.94862 0.94263 0.92360 1.60545 1.05455 1.33905 1.30912 1.22293 0.95760 0.94833 0.88723 0.92536 1.22071 0.98997 0.94058 0.98640 1.22460 0.97665 0.98821 0.97684 1.19883 0.93478 0.93610 0.94320 0.95271 1.21378 0.94552 1.09796 1.29148 0.95253 1.25907 1.00795 0.95948 0.96154 1.70068 1.33203 1.17577 1.38777 0.85863 0.80536 0.79546 0.77214 1.19167 1.22257 1.16611 1.22452 0.96649 0.97287 0.97436 0.91636 0.92638 0.92612 0.91165 0.89564 0.85252 0.92005 0.86442 0.91676 0.83650 0.84359 0.93942 0.89874 0.83921 0.91291 0.91188 0.93916 0.93889 0.92743 0.92814 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.75 71.98 0.70 -1.76 16 2 C -0.09 -1.93 5.40 29.85 0.16 -1.77 16 3 C -0.02 -0.46 5.13 -19.88 -0.10 -0.56 16 4 C -0.17 -3.82 9.62 22.37 0.22 -3.61 16 5 C 0.12 2.50 6.69 22.51 0.15 2.65 16 6 O -0.34 -6.69 10.50 -92.39 -0.97 -7.66 16 7 C 0.02 0.21 9.81 113.37 1.11 1.32 16 8 C -0.22 -4.01 9.04 22.37 0.20 -3.81 16 9 C -0.08 -1.43 9.66 22.25 0.22 -1.21 16 10 C -0.13 -2.69 5.39 -19.85 -0.11 -2.80 16 11 C 0.10 2.22 4.82 85.56 0.41 2.63 16 12 N -0.68 -17.26 5.61 -489.97 -2.75 -20.01 16 13 C 0.09 2.78 3.20 46.00 0.15 2.92 16 14 H 0.06 1.56 7.82 -2.39 -0.02 1.54 16 15 C -0.10 -3.15 6.53 31.32 0.20 -2.95 16 16 C -0.13 -5.24 4.89 31.32 0.15 -5.09 16 17 C 0.01 0.29 2.28 -10.47 -0.02 0.27 16 18 H 0.03 1.34 7.06 -2.39 -0.02 1.32 16 19 C -0.51 -29.46 8.94 25.60 0.23 -29.23 16 20 H 0.03 1.88 8.01 -2.91 -0.02 1.86 16 21 C 0.01 0.48 5.46 84.66 0.46 0.94 16 22 N -0.96 -60.90 13.96 21.45 0.30 -60.60 16 23 Si 0.94 45.03 24.88 68.60 1.71 46.74 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.24 -10.60 6.41 99.48 0.64 -9.96 16 27 C -0.10 -3.79 5.65 31.89 0.18 -3.61 16 28 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.05 0.97 6.69 -2.39 -0.02 0.96 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.39 8.05 -2.39 -0.02 1.37 16 32 H 0.09 2.06 6.59 -2.38 -0.02 2.04 16 33 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.06 0.59 7.66 -2.39 -0.02 0.58 16 35 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.06 0.57 7.66 -2.39 -0.02 0.55 16 37 H 0.15 1.94 6.30 -2.91 -0.02 1.93 16 38 H 0.14 2.09 8.03 -2.91 -0.02 2.07 16 39 H 0.04 0.83 7.93 -2.39 -0.02 0.81 16 40 H 0.08 1.75 5.83 -2.39 -0.01 1.74 16 41 H 0.34 8.66 8.41 -89.70 -0.75 7.90 16 42 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 2.21 8.04 -2.39 -0.02 2.19 16 44 H 0.04 1.93 7.83 -2.39 -0.02 1.91 16 45 H 0.04 1.70 6.04 -2.39 -0.01 1.68 16 46 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.05 2.21 8.05 -2.39 -0.02 2.19 16 48 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.87 370.91 2.72 -65.15 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.11 Total: 22.05 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 4.31 Total: -45.67 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.45 Total: -80.61 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.97 Total: -7.66 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.71 Total: 46.74 kcal Total: -67.87 2.72 -65.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449446662.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.397 kcal (2) G-P(sol) polarization free energy of solvation -67.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds