Wall clock time and date at job start Tue Mar 31 2020 07:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99887 * 2 1 4 4 C 1.52992 * 112.90864 * 51.73994 * 3 2 1 5 5 C 1.53790 * 113.61209 * 280.49353 * 3 2 1 6 6 C 1.53779 * 87.07866 * 220.01881 * 5 3 2 7 7 H 1.09001 * 113.61341 * 140.06364 * 6 5 3 8 8 N 1.46895 * 113.61424 * 270.88206 * 6 5 3 9 9 C 1.46902 * 111.00203 * 277.14286 * 8 6 5 10 10 C 1.50699 * 109.46998 * 179.97438 * 9 8 6 11 11 C 1.38629 * 119.74932 * 90.00578 * 10 9 8 12 12 C 1.37617 * 120.25066 * 179.97438 * 11 10 9 13 13 C 1.40716 * 119.74705 * 0.02562 * 12 11 10 14 14 C 1.41392 * 120.24489 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99633 * 211.33673 * 14 13 12 16 16 C 1.39943 * 120.00453 * 31.33727 * 14 13 12 17 17 N 1.30818 * 120.00404 * 202.89723 * 16 14 13 18 18 Si 1.86807 * 119.99763 * 22.89400 * 16 14 13 19 19 H 1.48494 * 109.47365 * 272.44219 * 18 16 14 20 20 H 1.48501 * 109.47061 * 32.44150 * 18 16 14 21 21 H 1.48499 * 109.46925 * 152.43837 * 18 16 14 22 22 C 1.40717 * 119.50712 * 0.26843 * 13 12 11 23 23 C 1.37619 * 119.74328 * 359.45259 * 22 13 12 24 24 C 1.53776 * 113.61415 * 182.99918 * 3 2 1 25 25 C 1.53003 * 113.61625 * 25.43009 * 24 3 2 26 26 C 1.53007 * 113.61292 * 254.52676 * 24 3 2 27 27 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47362 * 300.00515 * 1 2 3 29 29 H 1.09005 * 109.47133 * 60.00802 * 1 2 3 30 30 H 1.08997 * 109.47748 * 308.25979 * 4 3 2 31 31 H 1.09004 * 109.46682 * 68.25981 * 4 3 2 32 32 H 1.09001 * 109.47571 * 188.25238 * 4 3 2 33 33 H 1.08999 * 113.61507 * 105.46721 * 5 3 2 34 34 H 1.09004 * 113.68925 * 334.57459 * 5 3 2 35 35 H 1.00904 * 111.00491 * 153.18921 * 8 6 5 36 36 H 1.09001 * 109.47085 * 60.00225 * 9 8 6 37 37 H 1.08994 * 109.47116 * 300.00178 * 9 8 6 38 38 H 1.08004 * 119.87489 * 359.97438 * 11 10 9 39 39 H 1.08001 * 120.12758 * 179.97438 * 12 11 10 40 40 H 0.96999 * 120.00537 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.12854 * 179.72572 * 22 13 12 42 42 H 1.08004 * 119.87161 * 180.27403 * 23 22 13 43 43 H 1.08998 * 109.46996 * 177.00777 * 25 24 3 44 44 H 1.09002 * 109.46602 * 296.99748 * 25 24 3 45 45 H 1.08994 * 109.47106 * 57.00686 * 25 24 3 46 46 H 1.08998 * 109.46884 * 316.75446 * 26 24 3 47 47 H 1.08991 * 109.47033 * 76.75538 * 26 24 3 48 48 H 1.08994 * 109.46934 * 196.75514 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4552 2.2045 1.1066 5 6 2.0263 1.9726 -1.3856 6 6 3.4293 2.4933 -1.0316 7 1 4.1312 2.4578 -1.8647 8 7 3.4193 3.7941 -0.3492 9 6 3.3145 4.8951 -1.3160 10 6 3.3066 6.2104 -0.5805 11 6 4.5033 6.8597 -0.3194 12 6 4.5081 8.0615 0.3510 13 6 3.2922 8.6308 0.7723 14 6 3.2848 9.8654 1.4614 15 1 2.5214 10.0681 2.1980 16 6 4.2665 10.8248 1.1889 17 7 4.5529 11.7389 2.0798 18 14 5.1680 10.8001 -0.4470 19 1 6.3490 9.9054 -0.3479 20 1 4.2561 10.3005 -1.5072 21 1 5.6154 12.1748 -0.7864 22 6 2.0840 7.9598 0.5072 23 6 2.1028 6.7618 -0.1699 24 6 3.5461 1.2960 -0.0737 25 6 4.1205 0.0392 -0.7308 26 6 4.2256 1.6374 1.2540 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 0.3660 2.2027 1.0643 31 1 1.7817 1.8301 2.0768 32 1 1.8225 3.2213 0.9672 33 1 1.2832 2.7620 -1.4988 34 1 2.0198 1.2634 -2.2133 35 1 4.2349 3.9023 0.2350 36 1 2.3907 4.7921 -1.8853 37 1 4.1657 4.8637 -1.9960 38 1 5.4354 6.4207 -0.6433 39 1 5.4416 8.5654 0.5538 40 1 5.2336 12.4037 1.8912 41 1 1.1454 8.3855 0.8299 42 1 1.1764 6.2472 -0.3783 43 1 5.2050 0.1265 -0.7957 44 1 3.8615 -0.8342 -0.1324 45 1 3.7041 -0.0698 -1.7322 46 1 3.7121 2.4789 1.7191 47 1 4.1818 0.7735 1.9172 48 1 5.2668 1.9029 1.0716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451492052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:39 Heat of formation + Delta-G solvation = -8.765245 kcal Electronic energy + Delta-G solvation = -25320.902818 eV Core-core repulsion = 21954.973722 eV Total energy + Delta-G solvation = -3365.929096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.84594 -37.98967 -36.72541 -34.46439 -33.20313 -30.87558 -30.27143 -29.66795 -29.32932 -27.21278 -26.75036 -25.85163 -23.30846 -22.03486 -21.63274 -21.44774 -19.95208 -18.01731 -17.42801 -16.60606 -16.04774 -15.67297 -15.37530 -14.96466 -14.55268 -14.46893 -13.87942 -13.81388 -13.74329 -13.49640 -13.18446 -12.81641 -12.54851 -12.32831 -12.30895 -12.20128 -12.04192 -11.89668 -11.80319 -11.57388 -11.55747 -11.31702 -10.99557 -10.77137 -10.70031 -10.62328 -10.34699 -10.25499 -10.00090 -9.80375 -9.54610 -9.37106 -9.07370 -8.15027 -7.71839 -7.50574 -6.97726 -4.47105 2.53438 2.71210 3.10686 3.18898 3.29199 3.73659 3.97164 4.15739 4.42707 4.47261 4.56876 4.72633 5.03535 5.15371 5.27946 5.32917 5.37823 5.42701 5.49216 5.56944 5.60714 5.64515 5.67798 5.72435 5.76710 5.80831 5.85710 5.94775 5.99473 6.07689 6.08627 6.12696 6.14211 6.20238 6.38152 6.50021 6.54617 6.62702 6.85250 6.92081 7.18303 7.24463 7.33678 7.43979 7.53609 7.66129 7.84665 7.90238 8.14905 8.36757 8.67630 8.81011 10.04977 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.003124 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.773059 B = 8961.429279 C = 9269.882517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.108 3.892 4 C -0.170 4.170 5 C -0.153 4.153 6 C 0.068 3.932 7 H 0.050 0.950 8 N -0.664 5.664 9 C 0.124 3.876 10 C -0.215 4.215 11 C -0.070 4.070 12 C -0.239 4.239 13 C 0.096 3.904 14 C -0.455 4.455 15 H 0.090 0.910 16 C 0.088 3.912 17 N -0.805 5.805 18 Si 0.909 3.091 19 H -0.265 1.265 20 H -0.251 1.251 21 H -0.290 1.290 22 C -0.212 4.212 23 C -0.059 4.059 24 C -0.062 4.062 25 C -0.119 4.119 26 C -0.143 4.143 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.346 0.654 36 H 0.064 0.936 37 H 0.021 0.979 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.285 0.715 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -18.820 -5.515 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C 0.069 3.931 4 C -0.227 4.227 5 C -0.191 4.191 6 C -0.042 4.042 7 H 0.068 0.932 8 N -0.296 5.296 9 C -0.003 4.003 10 C -0.217 4.217 11 C -0.089 4.089 12 C -0.258 4.258 13 C 0.093 3.907 14 C -0.483 4.483 15 H 0.108 0.892 16 C -0.132 4.132 17 N -0.429 5.429 18 Si 0.735 3.265 19 H -0.191 1.191 20 H -0.174 1.174 21 H -0.217 1.217 22 C -0.231 4.231 23 C -0.078 4.078 24 C -0.062 4.062 25 C -0.177 4.177 26 C -0.201 4.201 27 H 0.096 0.904 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.166 0.834 36 H 0.082 0.918 37 H 0.039 0.961 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.741 -18.749 -5.265 19.666 hybrid contribution 1.091 0.374 -0.999 1.526 sum -1.650 -18.375 -6.264 19.484 Atomic orbital electron populations 1.22654 0.82021 1.01868 1.00106 1.87896 1.18998 1.27912 1.94845 1.22890 0.92952 0.82583 0.94710 1.22297 1.00217 1.03090 0.97079 1.23582 0.97831 1.00041 0.97627 1.22443 0.96642 0.89553 0.95570 0.93171 1.60555 1.46774 0.99659 1.22648 1.20542 0.99374 0.88195 0.92198 1.18909 0.93456 0.97622 1.11677 1.20467 0.95578 0.95221 0.97627 1.21140 0.97416 0.97921 1.09342 1.17725 0.90908 0.93020 0.89020 1.19465 1.10934 0.98319 1.19580 0.89245 1.26129 0.94464 0.94372 0.98189 1.69740 1.26075 1.13659 1.33446 0.86395 0.80567 0.76603 0.82921 1.19101 1.17409 1.21707 1.21045 0.96966 0.98206 1.06918 1.20442 0.95683 0.94745 0.96959 1.22046 0.93159 0.94953 0.96051 1.21421 0.99590 0.96264 1.00412 1.21777 1.00048 1.02257 0.95977 0.90353 0.93826 0.94369 0.93073 0.92423 0.86877 0.90749 0.89918 0.83431 0.91783 0.96073 0.89402 0.88053 0.90488 0.88375 0.88953 0.92871 0.91718 0.92575 0.90431 0.92691 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.41 101.05 1.05 1.34 16 2 O -0.38 -4.55 9.72 -35.23 -0.34 -4.90 16 3 C 0.11 1.27 1.19 -89.81 -0.11 1.16 16 4 C -0.17 -2.07 7.36 37.15 0.27 -1.80 16 5 C -0.15 -1.78 6.65 -25.92 -0.17 -1.95 16 6 C 0.07 0.81 3.46 -66.90 -0.23 0.58 16 7 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 8 N -0.66 -8.98 3.54 -107.14 -0.38 -9.36 16 9 C 0.12 1.92 5.76 -4.98 -0.03 1.89 16 10 C -0.22 -4.13 5.41 -104.33 -0.56 -4.69 16 11 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 12 C -0.24 -5.65 7.41 -38.87 -0.29 -5.94 16 13 C 0.10 2.41 5.02 -106.83 -0.54 1.88 16 14 C -0.45 -12.25 9.52 -37.74 -0.36 -12.61 16 15 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 16 C 0.09 2.29 5.32 -17.34 -0.09 2.20 16 17 N -0.81 -21.38 13.93 55.55 0.77 -20.61 16 18 Si 0.91 20.67 25.08 -169.99 -4.26 16.40 16 19 H -0.27 -5.86 6.36 56.52 0.36 -5.50 16 20 H -0.25 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 C -0.21 -4.86 9.80 -38.87 -0.38 -5.24 16 23 C -0.06 -1.21 9.67 -39.66 -0.38 -1.59 16 24 C -0.06 -0.69 1.31 -153.69 -0.20 -0.89 16 25 C -0.12 -1.22 8.48 37.16 0.31 -0.90 16 26 C -0.14 -1.57 7.49 37.16 0.28 -1.29 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.41 6.43 -51.93 -0.33 0.07 16 29 H 0.04 0.35 8.01 -51.93 -0.42 -0.07 16 30 H 0.05 0.59 6.36 -51.93 -0.33 0.26 16 31 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 32 H 0.11 1.56 5.60 -51.93 -0.29 1.27 16 33 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 34 H 0.08 0.91 7.63 -51.93 -0.40 0.52 16 35 H 0.35 4.77 7.43 -39.29 -0.29 4.48 16 36 H 0.06 0.97 7.84 -51.93 -0.41 0.56 16 37 H 0.02 0.32 8.08 -51.93 -0.42 -0.10 16 38 H 0.09 1.62 8.06 -52.48 -0.42 1.19 16 39 H 0.10 2.43 5.08 -52.49 -0.27 2.16 16 40 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 41 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.68 7.95 -51.93 -0.41 0.26 16 45 H 0.06 0.56 7.32 -51.93 -0.38 0.18 16 46 H 0.08 0.92 5.42 -51.93 -0.28 0.64 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -26.43 366.32 -8.50 -34.93 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.00 Total: 7.70 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: -1.81 Total: -29.70 kcal Atomic # 7 Polarization: -30.36 SS G_CDS: 0.39 Total: -29.97 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.34 Total: -4.90 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.26 Total: 16.40 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -26.43 -8.50 -34.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451492052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.167 kcal (2) G-P(sol) polarization free energy of solvation -26.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds