Wall clock time and date at job start Tue Mar 31 2020 07:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99887 * 2 1 4 4 C 1.52992 * 112.90864 * 51.73994 * 3 2 1 5 5 C 1.53790 * 113.61209 * 280.49353 * 3 2 1 6 6 C 1.53779 * 87.07866 * 220.01881 * 5 3 2 7 7 H 1.09001 * 113.61341 * 140.06364 * 6 5 3 8 8 N 1.46895 * 113.61424 * 270.88206 * 6 5 3 9 9 C 1.46902 * 111.00203 * 277.14286 * 8 6 5 10 10 C 1.50699 * 109.46998 * 179.97438 * 9 8 6 11 11 C 1.38629 * 119.74932 * 90.00578 * 10 9 8 12 12 C 1.37617 * 120.25066 * 179.97438 * 11 10 9 13 13 C 1.40716 * 119.74705 * 0.02562 * 12 11 10 14 14 C 1.41392 * 120.24489 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99633 * 211.33673 * 14 13 12 16 16 C 1.39943 * 120.00453 * 31.33727 * 14 13 12 17 17 N 1.30818 * 120.00404 * 202.89723 * 16 14 13 18 18 Si 1.86807 * 119.99763 * 22.89400 * 16 14 13 19 19 H 1.48494 * 109.47365 * 272.44219 * 18 16 14 20 20 H 1.48501 * 109.47061 * 32.44150 * 18 16 14 21 21 H 1.48499 * 109.46925 * 152.43837 * 18 16 14 22 22 C 1.40717 * 119.50712 * 0.26843 * 13 12 11 23 23 C 1.37619 * 119.74328 * 359.45259 * 22 13 12 24 24 C 1.53776 * 113.61415 * 182.99918 * 3 2 1 25 25 C 1.53003 * 113.61625 * 25.43009 * 24 3 2 26 26 C 1.53007 * 113.61292 * 254.52676 * 24 3 2 27 27 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47362 * 300.00515 * 1 2 3 29 29 H 1.09005 * 109.47133 * 60.00802 * 1 2 3 30 30 H 1.08997 * 109.47748 * 308.25979 * 4 3 2 31 31 H 1.09004 * 109.46682 * 68.25981 * 4 3 2 32 32 H 1.09001 * 109.47571 * 188.25238 * 4 3 2 33 33 H 1.08999 * 113.61507 * 105.46721 * 5 3 2 34 34 H 1.09004 * 113.68925 * 334.57459 * 5 3 2 35 35 H 1.00904 * 111.00491 * 153.18921 * 8 6 5 36 36 H 1.09001 * 109.47085 * 60.00225 * 9 8 6 37 37 H 1.08994 * 109.47116 * 300.00178 * 9 8 6 38 38 H 1.08004 * 119.87489 * 359.97438 * 11 10 9 39 39 H 1.08001 * 120.12758 * 179.97438 * 12 11 10 40 40 H 0.96999 * 120.00537 * 179.97438 * 17 16 14 41 41 H 1.08003 * 120.12854 * 179.72572 * 22 13 12 42 42 H 1.08004 * 119.87161 * 180.27403 * 23 22 13 43 43 H 1.08998 * 109.46996 * 177.00777 * 25 24 3 44 44 H 1.09002 * 109.46602 * 296.99748 * 25 24 3 45 45 H 1.08994 * 109.47106 * 57.00686 * 25 24 3 46 46 H 1.08998 * 109.46884 * 316.75446 * 26 24 3 47 47 H 1.08991 * 109.47033 * 76.75538 * 26 24 3 48 48 H 1.08994 * 109.46934 * 196.75514 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4552 2.2045 1.1066 5 6 2.0263 1.9726 -1.3856 6 6 3.4293 2.4933 -1.0316 7 1 4.1312 2.4578 -1.8647 8 7 3.4193 3.7941 -0.3492 9 6 3.3145 4.8951 -1.3160 10 6 3.3066 6.2104 -0.5805 11 6 4.5033 6.8597 -0.3194 12 6 4.5081 8.0615 0.3510 13 6 3.2922 8.6308 0.7723 14 6 3.2848 9.8654 1.4614 15 1 2.5214 10.0681 2.1980 16 6 4.2665 10.8248 1.1889 17 7 4.5529 11.7389 2.0798 18 14 5.1680 10.8001 -0.4470 19 1 6.3490 9.9054 -0.3479 20 1 4.2561 10.3005 -1.5072 21 1 5.6154 12.1748 -0.7864 22 6 2.0840 7.9598 0.5072 23 6 2.1028 6.7618 -0.1699 24 6 3.5461 1.2960 -0.0737 25 6 4.1205 0.0392 -0.7308 26 6 4.2256 1.6374 1.2540 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 0.3660 2.2027 1.0643 31 1 1.7817 1.8301 2.0768 32 1 1.8225 3.2213 0.9672 33 1 1.2832 2.7620 -1.4988 34 1 2.0198 1.2634 -2.2133 35 1 4.2349 3.9023 0.2350 36 1 2.3907 4.7921 -1.8853 37 1 4.1657 4.8637 -1.9960 38 1 5.4354 6.4207 -0.6433 39 1 5.4416 8.5654 0.5538 40 1 5.2336 12.4037 1.8912 41 1 1.1454 8.3855 0.8299 42 1 1.1764 6.2472 -0.3783 43 1 5.2050 0.1265 -0.7957 44 1 3.8615 -0.8342 -0.1324 45 1 3.7041 -0.0698 -1.7322 46 1 3.7121 2.4789 1.7191 47 1 4.1818 0.7735 1.9172 48 1 5.2668 1.9029 1.0716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451492052.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:38 Heat of formation + Delta-G solvation = -22.197940 kcal Electronic energy + Delta-G solvation = -25321.485304 eV Core-core repulsion = 21954.973722 eV Total energy + Delta-G solvation = -3366.511581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75974 -39.68195 -37.67959 -35.98331 -34.78219 -32.20204 -31.49266 -31.37838 -30.26166 -28.44121 -27.60244 -27.04457 -24.78935 -23.27749 -22.95034 -22.59727 -21.62235 -19.33237 -18.93574 -17.70268 -17.33305 -16.81573 -16.50406 -16.02747 -15.91367 -15.67293 -15.51735 -15.31174 -14.88646 -14.62108 -14.36097 -14.12063 -14.03585 -13.70912 -13.53210 -13.16267 -13.09639 -12.98307 -12.89629 -12.82114 -12.67965 -12.55486 -12.45162 -12.37521 -12.04066 -11.84235 -11.72836 -11.48465 -11.38160 -11.14308 -10.89850 -10.87107 -10.25091 -9.48727 -9.37400 -9.11865 -8.90010 -6.45656 0.78276 0.93240 1.27112 1.40014 1.48101 2.12787 2.56608 2.91547 3.20388 3.52840 3.58091 3.61965 3.80377 4.10480 4.26924 4.29458 4.32961 4.46338 4.47624 4.56303 4.59454 4.60180 4.65732 4.75550 4.78294 4.82852 4.84828 4.88734 4.90803 4.94794 5.02519 5.06648 5.07162 5.09707 5.15777 5.23559 5.26909 5.36781 5.51157 5.56905 5.61510 5.66713 5.80470 5.96190 6.09726 6.22965 6.31559 6.44329 6.47217 6.54004 6.79129 6.88385 8.19186 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.003124 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.773059 B = 8961.429279 C = 9269.882517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.105 3.895 4 C -0.166 4.166 5 C -0.148 4.148 6 C 0.071 3.929 7 H 0.059 0.941 8 N -0.665 5.665 9 C 0.130 3.870 10 C -0.186 4.186 11 C -0.074 4.074 12 C -0.249 4.249 13 C 0.074 3.926 14 C -0.497 4.497 15 H 0.052 0.948 16 C 0.051 3.949 17 N -0.850 5.850 18 Si 0.963 3.037 19 H -0.253 1.253 20 H -0.260 1.260 21 H -0.275 1.275 22 C -0.225 4.225 23 C -0.059 4.059 24 C -0.060 4.060 25 C -0.115 4.115 26 C -0.141 4.141 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.346 0.654 36 H 0.074 0.926 37 H 0.035 0.965 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.293 0.707 41 H 0.096 0.904 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -21.859 -7.891 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C 0.065 3.935 4 C -0.223 4.223 5 C -0.186 4.186 6 C -0.039 4.039 7 H 0.076 0.924 8 N -0.297 5.297 9 C 0.002 3.998 10 C -0.188 4.188 11 C -0.093 4.093 12 C -0.269 4.269 13 C 0.072 3.928 14 C -0.526 4.526 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.476 5.476 18 Si 0.785 3.215 19 H -0.178 1.178 20 H -0.184 1.184 21 H -0.201 1.201 22 C -0.244 4.244 23 C -0.078 4.078 24 C -0.060 4.060 25 C -0.173 4.173 26 C -0.199 4.199 27 H 0.113 0.887 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.090 -21.801 -7.635 23.193 hybrid contribution 0.749 1.017 -0.292 1.296 sum -1.342 -20.784 -7.927 22.285 Atomic orbital electron populations 1.22803 0.80917 1.03107 1.00284 1.87879 1.20261 1.27917 1.94898 1.22893 0.93407 0.82567 0.94589 1.22223 1.00419 1.02337 0.97300 1.23568 0.97376 0.99934 0.97771 1.22418 0.97014 0.88654 0.95783 0.92351 1.60441 1.47012 0.99950 1.22331 1.20475 1.00658 0.86534 0.92112 1.19413 0.92397 0.98477 1.08471 1.20812 0.97605 0.94089 0.96760 1.21226 0.96512 0.99135 1.09992 1.17848 0.92407 0.92729 0.89846 1.19441 1.11609 1.00501 1.21089 0.92984 1.26777 0.95014 0.93767 1.00742 1.69769 1.27753 1.15069 1.35020 0.85582 0.79605 0.77484 0.78808 1.17752 1.18395 1.20133 1.21227 0.96402 0.99326 1.07473 1.20761 0.97553 0.93731 0.95755 1.22070 0.92891 0.95075 0.95984 1.21393 1.00224 0.95421 1.00261 1.21746 1.00315 1.01885 0.95922 0.88701 0.93828 0.93974 0.92780 0.92705 0.88254 0.91412 0.89058 0.83397 0.90759 0.94645 0.86258 0.88727 0.89697 0.88619 0.86167 0.91812 0.92151 0.92342 0.91538 0.92544 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.41 113.37 1.18 1.60 16 2 O -0.39 -8.46 9.72 -148.98 -1.45 -9.91 16 3 C 0.10 2.20 1.19 -10.27 -0.01 2.18 16 4 C -0.17 -3.73 7.36 71.98 0.53 -3.20 16 5 C -0.15 -2.98 6.65 31.12 0.21 -2.77 16 6 C 0.07 1.44 3.46 45.44 0.16 1.59 16 7 H 0.06 1.13 8.09 -2.39 -0.02 1.12 16 8 N -0.66 -15.60 3.54 -492.87 -1.74 -17.34 16 9 C 0.13 3.43 5.76 85.56 0.49 3.92 16 10 C -0.19 -6.51 5.41 -19.68 -0.11 -6.61 16 11 C -0.07 -2.85 9.67 22.22 0.21 -2.63 16 12 C -0.25 -11.59 7.41 22.73 0.17 -11.42 16 13 C 0.07 3.79 5.02 -21.29 -0.11 3.68 16 14 C -0.50 -28.35 9.52 23.46 0.22 -28.12 16 15 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 16 C 0.05 2.80 5.32 85.26 0.45 3.25 16 17 N -0.85 -47.25 13.93 21.83 0.30 -46.95 16 18 Si 0.96 42.96 25.08 68.60 1.72 44.68 16 19 H -0.25 -10.62 6.36 99.48 0.63 -9.99 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 22 C -0.22 -10.33 9.80 22.73 0.22 -10.11 16 23 C -0.06 -2.27 9.67 22.22 0.21 -2.06 16 24 C -0.06 -1.16 1.31 -51.65 -0.07 -1.23 16 25 C -0.12 -2.00 8.48 71.98 0.61 -1.39 16 26 C -0.14 -2.76 7.49 71.98 0.54 -2.22 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 0.73 6.43 -2.39 -0.02 0.71 16 29 H 0.04 0.67 8.01 -2.38 -0.02 0.65 16 30 H 0.05 1.15 6.36 -2.39 -0.02 1.14 16 31 H 0.05 1.24 7.34 -2.38 -0.02 1.22 16 32 H 0.10 2.53 5.60 -2.39 -0.01 2.52 16 33 H 0.07 1.46 7.89 -2.39 -0.02 1.44 16 34 H 0.09 1.69 7.63 -2.38 -0.02 1.68 16 35 H 0.35 8.32 7.43 -89.69 -0.67 7.66 16 36 H 0.07 1.88 7.84 -2.39 -0.02 1.86 16 37 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 38 H 0.12 3.86 8.06 -2.91 -0.02 3.83 16 39 H 0.09 4.48 5.08 -2.91 -0.01 4.47 16 40 H 0.29 14.59 8.30 -92.71 -0.77 13.82 16 41 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 42 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 45 H 0.06 0.98 7.32 -2.39 -0.02 0.96 16 46 H 0.07 1.45 5.42 -2.39 -0.01 1.43 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -58.70 366.32 3.95 -54.75 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.20 Total: 30.31 kcal Atomic # 6 Polarization: -60.45 SS G_CDS: 4.92 Total: -55.53 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -1.44 Total: -64.29 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.45 Total: -9.91 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.72 Total: 44.68 kcal Total: -58.70 3.95 -54.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451492052.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.552 kcal (2) G-P(sol) polarization free energy of solvation -58.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds