Wall clock time and date at job start Tue Mar 31 2020 07:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 113.99763 * 2 1 4 4 C 1.53005 * 112.85510 * 308.31277 * 3 2 1 5 5 C 1.53786 * 113.61298 * 79.50924 * 3 2 1 6 6 C 1.53790 * 87.07964 * 139.97750 * 5 3 2 7 7 H 1.08991 * 113.61495 * 219.93366 * 6 5 3 8 8 N 1.46903 * 113.61081 * 89.12064 * 6 5 3 9 9 C 1.46900 * 110.99752 * 154.61145 * 8 6 5 10 10 C 1.50704 * 109.46931 * 179.97438 * 9 8 6 11 11 C 1.38641 * 119.74717 * 269.72203 * 10 9 8 12 12 C 1.37619 * 120.24510 * 179.76099 * 11 10 9 13 13 C 1.40720 * 119.74413 * 0.48964 * 12 11 10 14 14 C 1.41398 * 120.23979 * 179.78459 * 13 12 11 15 15 H 1.08002 * 120.00022 * 25.68461 * 14 13 12 16 16 C 1.39946 * 119.99625 * 205.67913 * 14 13 12 17 17 N 1.30826 * 120.00341 * 14.14146 * 16 14 13 18 18 Si 1.86806 * 119.99928 * 194.14148 * 16 14 13 19 19 H 1.48501 * 109.46838 * 90.00011 * 18 16 14 20 20 H 1.48498 * 109.46970 * 210.00134 * 18 16 14 21 21 H 1.48503 * 109.46855 * 329.99985 * 18 16 14 22 22 C 1.40707 * 119.51216 * 359.76939 * 13 12 11 23 23 C 1.37621 * 119.74653 * 359.97438 * 22 13 12 24 24 C 1.53775 * 87.08138 * 334.57172 * 6 5 3 25 25 C 1.53009 * 113.61181 * 270.88328 * 24 6 5 26 26 C 1.52998 * 113.61525 * 139.98481 * 24 6 5 27 27 H 1.08993 * 109.47511 * 59.99464 * 1 2 3 28 28 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46777 * 299.99762 * 1 2 3 30 30 H 1.09003 * 109.46816 * 66.59682 * 4 3 2 31 31 H 1.08998 * 109.47432 * 186.59861 * 4 3 2 32 32 H 1.09000 * 109.46931 * 306.59951 * 4 3 2 33 33 H 1.08994 * 113.61507 * 254.52657 * 5 3 2 34 34 H 1.08998 * 113.61076 * 25.43473 * 5 3 2 35 35 H 1.00895 * 111.00441 * 30.64740 * 8 6 5 36 36 H 1.08996 * 109.46896 * 299.99379 * 9 8 6 37 37 H 1.09002 * 109.47514 * 59.99946 * 9 8 6 38 38 H 1.07992 * 119.87652 * 0.02562 * 11 10 9 39 39 H 1.08000 * 120.12666 * 180.28175 * 12 11 10 40 40 H 0.96997 * 120.00131 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.12542 * 180.02562 * 22 13 12 42 42 H 1.07998 * 119.87391 * 180.02562 * 23 22 13 43 43 H 1.08997 * 109.47397 * 157.50235 * 25 24 6 44 44 H 1.09003 * 109.47192 * 277.49893 * 25 24 6 45 45 H 1.08997 * 109.46687 * 37.49535 * 25 24 6 46 46 H 1.08998 * 109.46929 * 322.49271 * 26 24 6 47 47 H 1.08993 * 109.47492 * 82.49750 * 26 24 6 48 48 H 1.09004 * 109.46744 * 202.50129 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4533 2.2038 -1.1063 5 6 2.0263 1.9725 1.3855 6 6 3.4294 2.4932 1.0315 7 1 4.1313 2.4577 1.8646 8 7 3.4194 3.7941 0.3491 9 6 4.6831 4.5114 0.5649 10 6 4.6359 5.8378 -0.1489 11 6 5.0801 5.9302 -1.4590 12 6 5.0371 7.1353 -2.1222 13 6 4.5495 8.2784 -1.4621 14 6 4.5049 9.5228 -2.1321 15 1 4.4361 9.5539 -3.2094 16 6 4.5498 10.7141 -1.3990 17 7 4.9073 10.6948 -0.1407 18 14 4.0991 12.3318 -2.2172 19 1 2.6435 12.5788 -2.0571 20 1 4.8615 13.4368 -1.5825 21 1 4.4340 12.2657 -3.6625 22 6 4.1064 8.1739 -0.1307 23 6 4.1537 6.9575 0.5112 24 6 3.5462 1.2960 0.0736 25 6 4.1205 0.0391 0.7306 26 6 4.2256 1.6373 -1.2541 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.4023 2.4144 -0.9086 31 1 2.0129 3.1389 -1.1311 32 1 1.5481 1.6981 -2.0672 33 1 1.2834 2.7619 1.4987 34 1 2.0200 1.2621 2.2122 35 1 2.6321 4.3515 0.6448 36 1 4.8287 4.6778 1.6322 37 1 5.5093 3.9178 0.1736 38 1 5.4573 5.0523 -1.9623 39 1 5.3794 7.2041 -3.1442 40 1 4.9388 11.5206 0.3673 41 1 3.7299 9.0449 0.3852 42 1 3.8137 6.8748 1.5329 43 1 3.8167 -0.8395 0.1616 44 1 5.2085 0.1027 0.7474 45 1 3.7455 -0.0411 1.7509 46 1 3.9213 2.6345 -1.5720 47 1 5.3076 1.6112 -1.1258 48 1 3.9316 0.9094 -2.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451492053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:42 Heat of formation + Delta-G solvation = -9.892714 kcal Electronic energy + Delta-G solvation = -25244.107948 eV Core-core repulsion = 21878.129961 eV Total energy + Delta-G solvation = -3365.977987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.77439 -37.73386 -36.65357 -34.42336 -33.07507 -30.85380 -29.84301 -29.30551 -29.03859 -27.07188 -26.55948 -25.83068 -23.22524 -22.34765 -21.56246 -20.97942 -19.87134 -18.00809 -17.28831 -16.33776 -15.72142 -15.44850 -15.32115 -14.97247 -14.60766 -14.39861 -13.88885 -13.62471 -13.45951 -13.40176 -13.08777 -12.59911 -12.36594 -12.29818 -12.09950 -11.94991 -11.93956 -11.84493 -11.65219 -11.46389 -11.35023 -11.09991 -11.00333 -10.77150 -10.63960 -10.60875 -10.33885 -10.26368 -9.90035 -9.55443 -9.39916 -9.34013 -9.16834 -8.04803 -7.44791 -7.27579 -6.73499 -4.36296 2.73256 3.06117 3.09065 3.10207 3.17280 3.77190 3.92938 4.27776 4.50283 4.57687 4.66235 4.73886 5.07785 5.29510 5.32207 5.34613 5.43624 5.55966 5.57602 5.66848 5.70671 5.72406 5.75668 5.84088 5.85286 5.91942 5.97828 5.99325 6.08727 6.22994 6.25950 6.33213 6.37059 6.42272 6.48328 6.59102 6.75618 6.94819 7.08158 7.27440 7.28298 7.38843 7.43251 7.61917 7.69918 7.89246 8.06344 8.14398 8.31215 8.65005 8.90430 8.98062 10.20029 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.002878 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.784673 B = 9728.219981 C = 9930.442348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.376 6.376 3 C 0.105 3.895 4 C -0.167 4.167 5 C -0.168 4.168 6 C 0.070 3.930 7 H 0.061 0.939 8 N -0.660 5.660 9 C 0.125 3.875 10 C -0.211 4.211 11 C -0.069 4.069 12 C -0.226 4.226 13 C 0.111 3.889 14 C -0.462 4.462 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.798 5.798 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.163 4.163 23 C -0.097 4.097 24 C -0.056 4.056 25 C -0.120 4.120 26 C -0.134 4.134 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.342 0.658 36 H 0.020 0.980 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.279 0.721 41 H 0.119 0.881 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.047 0.953 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -15.293 2.906 16.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.295 6.295 3 C 0.065 3.935 4 C -0.225 4.225 5 C -0.206 4.206 6 C -0.041 4.041 7 H 0.079 0.921 8 N -0.292 5.292 9 C -0.002 4.002 10 C -0.213 4.213 11 C -0.088 4.088 12 C -0.246 4.246 13 C 0.109 3.891 14 C -0.492 4.492 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.424 5.424 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.183 4.183 23 C -0.116 4.116 24 C -0.057 4.057 25 C -0.178 4.178 26 C -0.191 4.191 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.162 0.838 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.263 -15.541 2.511 16.599 hybrid contribution -0.529 1.265 0.723 1.550 sum -5.792 -14.275 3.234 15.741 Atomic orbital electron populations 1.22631 0.82141 1.01871 0.99963 1.87918 1.18871 1.27880 1.94788 1.22962 0.93758 0.82653 0.94083 1.22246 1.00794 1.02193 0.97229 1.23879 0.97629 1.00659 0.98432 1.22497 0.96145 0.90709 0.94770 0.92093 1.60518 1.05848 1.03231 1.59605 1.20618 0.90666 0.92645 0.96280 1.18892 1.13620 0.92903 0.95864 1.20325 0.98909 0.95903 0.93694 1.20997 1.09864 0.93990 0.99756 1.17637 0.87393 0.92140 0.91954 1.19617 1.44663 0.90157 0.94764 0.90554 1.25904 0.92391 1.01300 0.94694 1.69809 1.33977 1.29746 1.08875 0.86300 0.79405 0.80493 0.80430 1.19343 1.20350 1.18654 1.21337 1.04331 0.96027 0.96569 1.20537 1.00357 0.93442 0.97247 1.22001 0.92160 0.94711 0.96808 1.21442 0.99701 0.96568 1.00067 1.21696 0.99215 1.03169 0.95008 0.93953 0.90369 0.94489 0.93227 0.87234 0.92291 0.91207 0.89483 0.83795 0.96186 0.91861 0.89465 0.89165 0.90991 0.86341 0.89986 0.91849 0.92848 0.92926 0.89422 0.93395 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.43 101.05 1.05 1.35 16 2 O -0.38 -4.64 9.65 -35.23 -0.34 -4.98 16 3 C 0.10 1.26 1.19 -89.80 -0.11 1.16 16 4 C -0.17 -2.05 7.15 37.16 0.27 -1.79 16 5 C -0.17 -1.92 6.61 -25.91 -0.17 -2.09 16 6 C 0.07 0.87 3.65 -66.90 -0.24 0.62 16 7 H 0.06 0.77 7.82 -51.93 -0.41 0.37 16 8 N -0.66 -9.40 2.83 -107.13 -0.30 -9.70 16 9 C 0.13 2.07 5.64 -4.97 -0.03 2.04 16 10 C -0.21 -4.34 5.42 -104.33 -0.56 -4.90 16 11 C -0.07 -1.51 9.67 -39.66 -0.38 -1.89 16 12 C -0.23 -5.48 9.80 -38.87 -0.38 -5.86 16 13 C 0.11 2.93 5.57 -106.82 -0.60 2.33 16 14 C -0.46 -12.20 9.07 -37.74 -0.34 -12.54 16 15 H 0.08 1.95 7.89 -52.49 -0.41 1.53 16 16 C 0.07 1.85 5.21 -17.34 -0.09 1.76 16 17 N -0.80 -20.54 10.82 55.55 0.60 -19.94 16 18 Si 0.91 18.63 29.58 -169.99 -5.03 13.60 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 21 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 22 C -0.16 -4.15 8.69 -38.88 -0.34 -4.49 16 23 C -0.10 -2.16 9.67 -39.66 -0.38 -2.55 16 24 C -0.06 -0.68 1.31 -153.70 -0.20 -0.88 16 25 C -0.12 -1.35 8.53 37.16 0.32 -1.03 16 26 C -0.13 -1.74 8.20 37.16 0.30 -1.43 16 27 H 0.04 0.39 6.76 -51.93 -0.35 0.04 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.33 8.01 -51.93 -0.42 -0.08 16 30 H 0.05 0.56 7.19 -51.93 -0.37 0.18 16 31 H 0.11 1.50 4.95 -51.93 -0.26 1.24 16 32 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 34 H 0.09 0.95 7.65 -51.93 -0.40 0.55 16 35 H 0.34 4.96 8.34 -39.29 -0.33 4.63 16 36 H 0.02 0.33 8.07 -51.93 -0.42 -0.09 16 37 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 38 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 39 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 40 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 41 H 0.12 3.14 6.11 -52.48 -0.32 2.82 16 42 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 43 H 0.06 0.73 7.84 -51.93 -0.41 0.32 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.56 7.34 -51.93 -0.38 0.18 16 46 H 0.09 1.27 5.70 -51.93 -0.30 0.98 16 47 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -26.24 372.76 -9.45 -35.69 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.11 Total: 9.89 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -1.89 Total: -30.19 kcal Atomic # 7 Polarization: -29.94 SS G_CDS: 0.30 Total: -29.64 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.34 Total: -4.98 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -26.24 -9.45 -35.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451492053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.795 kcal (2) G-P(sol) polarization free energy of solvation -26.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds