Wall clock time and date at job start Tue Mar 31 2020 07:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42894 * 113.99763 * 2 1 4 4 C 1.53005 * 112.85510 * 308.31277 * 3 2 1 5 5 C 1.53786 * 113.61298 * 79.50924 * 3 2 1 6 6 C 1.53790 * 87.07964 * 139.97750 * 5 3 2 7 7 H 1.08991 * 113.61495 * 219.93366 * 6 5 3 8 8 N 1.46903 * 113.61081 * 89.12064 * 6 5 3 9 9 C 1.46900 * 110.99752 * 154.61145 * 8 6 5 10 10 C 1.50704 * 109.46931 * 179.97438 * 9 8 6 11 11 C 1.38641 * 119.74717 * 269.72203 * 10 9 8 12 12 C 1.37619 * 120.24510 * 179.76099 * 11 10 9 13 13 C 1.40720 * 119.74413 * 0.48964 * 12 11 10 14 14 C 1.41398 * 120.23979 * 179.78459 * 13 12 11 15 15 H 1.08002 * 120.00022 * 25.68461 * 14 13 12 16 16 C 1.39946 * 119.99625 * 205.67913 * 14 13 12 17 17 N 1.30826 * 120.00341 * 14.14146 * 16 14 13 18 18 Si 1.86806 * 119.99928 * 194.14148 * 16 14 13 19 19 H 1.48501 * 109.46838 * 90.00011 * 18 16 14 20 20 H 1.48498 * 109.46970 * 210.00134 * 18 16 14 21 21 H 1.48503 * 109.46855 * 329.99985 * 18 16 14 22 22 C 1.40707 * 119.51216 * 359.76939 * 13 12 11 23 23 C 1.37621 * 119.74653 * 359.97438 * 22 13 12 24 24 C 1.53775 * 87.08138 * 334.57172 * 6 5 3 25 25 C 1.53009 * 113.61181 * 270.88328 * 24 6 5 26 26 C 1.52998 * 113.61525 * 139.98481 * 24 6 5 27 27 H 1.08993 * 109.47511 * 59.99464 * 1 2 3 28 28 H 1.09000 * 109.47322 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46777 * 299.99762 * 1 2 3 30 30 H 1.09003 * 109.46816 * 66.59682 * 4 3 2 31 31 H 1.08998 * 109.47432 * 186.59861 * 4 3 2 32 32 H 1.09000 * 109.46931 * 306.59951 * 4 3 2 33 33 H 1.08994 * 113.61507 * 254.52657 * 5 3 2 34 34 H 1.08998 * 113.61076 * 25.43473 * 5 3 2 35 35 H 1.00895 * 111.00441 * 30.64740 * 8 6 5 36 36 H 1.08996 * 109.46896 * 299.99379 * 9 8 6 37 37 H 1.09002 * 109.47514 * 59.99946 * 9 8 6 38 38 H 1.07992 * 119.87652 * 0.02562 * 11 10 9 39 39 H 1.08000 * 120.12666 * 180.28175 * 12 11 10 40 40 H 0.96997 * 120.00131 * 179.97438 * 17 16 14 41 41 H 1.08004 * 120.12542 * 180.02562 * 22 13 12 42 42 H 1.07998 * 119.87391 * 180.02562 * 23 22 13 43 43 H 1.08997 * 109.47397 * 157.50235 * 25 24 6 44 44 H 1.09003 * 109.47192 * 277.49893 * 25 24 6 45 45 H 1.08997 * 109.46687 * 37.49535 * 25 24 6 46 46 H 1.08998 * 109.46929 * 322.49271 * 26 24 6 47 47 H 1.08993 * 109.47492 * 82.49750 * 26 24 6 48 48 H 1.09004 * 109.46744 * 202.50129 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4533 2.2038 -1.1063 5 6 2.0263 1.9725 1.3855 6 6 3.4294 2.4932 1.0315 7 1 4.1313 2.4577 1.8646 8 7 3.4194 3.7941 0.3491 9 6 4.6831 4.5114 0.5649 10 6 4.6359 5.8378 -0.1489 11 6 5.0801 5.9302 -1.4590 12 6 5.0371 7.1353 -2.1222 13 6 4.5495 8.2784 -1.4621 14 6 4.5049 9.5228 -2.1321 15 1 4.4361 9.5539 -3.2094 16 6 4.5498 10.7141 -1.3990 17 7 4.9073 10.6948 -0.1407 18 14 4.0991 12.3318 -2.2172 19 1 2.6435 12.5788 -2.0571 20 1 4.8615 13.4368 -1.5825 21 1 4.4340 12.2657 -3.6625 22 6 4.1064 8.1739 -0.1307 23 6 4.1537 6.9575 0.5112 24 6 3.5462 1.2960 0.0736 25 6 4.1205 0.0391 0.7306 26 6 4.2256 1.6373 -1.2541 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.4023 2.4144 -0.9086 31 1 2.0129 3.1389 -1.1311 32 1 1.5481 1.6981 -2.0672 33 1 1.2834 2.7619 1.4987 34 1 2.0200 1.2621 2.2122 35 1 2.6321 4.3515 0.6448 36 1 4.8287 4.6778 1.6322 37 1 5.5093 3.9178 0.1736 38 1 5.4573 5.0523 -1.9623 39 1 5.3794 7.2041 -3.1442 40 1 4.9388 11.5206 0.3673 41 1 3.7299 9.0449 0.3852 42 1 3.8137 6.8748 1.5329 43 1 3.8167 -0.8395 0.1616 44 1 5.2085 0.1027 0.7474 45 1 3.7455 -0.0411 1.7509 46 1 3.9213 2.6345 -1.5720 47 1 5.3076 1.6112 -1.1258 48 1 3.9316 0.9094 -2.0103 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451492053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:59:41 Heat of formation + Delta-G solvation = -21.451354 kcal Electronic energy + Delta-G solvation = -25244.609168 eV Core-core repulsion = 21878.129961 eV Total energy + Delta-G solvation = -3366.479207 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73998 -39.47523 -37.66063 -36.00367 -34.59759 -32.02770 -31.32112 -31.02895 -30.16456 -28.23595 -27.54052 -27.12550 -24.78484 -23.34129 -22.82769 -22.53853 -21.59949 -19.18534 -18.99074 -17.30608 -17.22004 -16.63596 -16.32260 -16.25230 -15.85049 -15.66814 -15.52495 -15.03091 -14.79981 -14.41010 -14.25922 -14.01017 -13.76392 -13.48653 -13.43666 -13.25369 -13.09619 -13.01672 -12.83697 -12.75988 -12.65652 -12.54733 -12.34733 -12.32148 -12.03128 -11.72716 -11.57615 -11.42783 -11.26199 -11.16181 -11.00961 -10.81619 -10.27281 -9.35626 -9.21193 -9.05785 -8.58605 -6.31691 0.97530 1.20858 1.38132 1.50714 1.52236 2.21844 2.72720 2.92185 3.25513 3.56429 3.63994 3.71618 3.84309 4.09765 4.35315 4.38521 4.41051 4.49975 4.56358 4.59912 4.62810 4.67583 4.70317 4.75262 4.80401 4.82823 4.88176 4.92760 4.96264 4.98046 5.05819 5.09200 5.12078 5.19265 5.29096 5.33878 5.42449 5.47735 5.52832 5.62836 5.70929 5.75916 6.00962 6.14924 6.23745 6.29861 6.44312 6.45672 6.55617 6.75439 6.98573 7.08511 8.37086 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027585 B = 0.002878 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.784673 B = 9728.219981 C = 9930.442348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.104 3.896 4 C -0.163 4.163 5 C -0.159 4.159 6 C 0.070 3.930 7 H 0.066 0.934 8 N -0.659 5.659 9 C 0.135 3.865 10 C -0.192 4.192 11 C -0.071 4.071 12 C -0.242 4.242 13 C 0.078 3.922 14 C -0.502 4.502 15 H 0.071 0.929 16 C 0.033 3.967 17 N -0.831 5.831 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.260 1.260 22 C -0.187 4.187 23 C -0.099 4.099 24 C -0.059 4.059 25 C -0.116 4.116 26 C -0.130 4.130 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.342 0.658 36 H 0.029 0.971 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.286 0.714 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.071 0.929 47 H 0.048 0.952 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 -16.755 3.650 18.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.064 3.936 4 C -0.221 4.221 5 C -0.197 4.197 6 C -0.040 4.040 7 H 0.084 0.916 8 N -0.290 5.290 9 C 0.007 3.993 10 C -0.193 4.193 11 C -0.090 4.090 12 C -0.262 4.262 13 C 0.075 3.925 14 C -0.532 4.532 15 H 0.089 0.911 16 C -0.181 4.181 17 N -0.458 5.458 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.184 1.184 22 C -0.206 4.206 23 C -0.118 4.118 24 C -0.060 4.060 25 C -0.173 4.173 26 C -0.187 4.187 27 H 0.061 0.939 28 H 0.112 0.888 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.162 0.838 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.746 -17.028 3.257 18.264 hybrid contribution -0.393 1.510 0.526 1.646 sum -6.140 -15.518 3.783 17.112 Atomic orbital electron populations 1.22796 0.80837 1.03144 1.00319 1.87895 1.20329 1.27801 1.94875 1.22921 0.93626 0.82737 0.94272 1.22173 1.01093 1.01486 0.97301 1.23833 0.96820 1.00695 0.98331 1.22481 0.97151 0.89567 0.94822 0.91588 1.60402 1.04671 1.03711 1.60222 1.20486 0.92068 0.90620 0.96139 1.19302 1.10350 0.94327 0.95336 1.20617 0.98358 0.95790 0.94223 1.21183 1.10257 0.94605 1.00131 1.17963 0.88638 0.93042 0.92823 1.19834 1.47191 0.91432 0.94785 0.91101 1.26715 0.91674 1.04452 0.95222 1.69867 1.34763 1.30986 1.10153 0.85214 0.79245 0.75996 0.79296 1.18707 1.19290 1.18408 1.21296 1.05851 0.96746 0.96732 1.20784 0.99894 0.92889 0.98203 1.22061 0.92489 0.95048 0.96378 1.21403 1.00059 0.95701 1.00165 1.21632 0.99335 1.02216 0.95539 0.93863 0.88758 0.93831 0.92455 0.88645 0.92761 0.90868 0.88512 0.83816 0.95322 0.91090 0.86990 0.89056 0.90367 0.88243 0.87857 0.92249 0.92224 0.92304 0.90980 0.93254 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.43 113.37 1.18 1.61 16 2 O -0.39 -8.75 9.65 -148.98 -1.44 -10.18 16 3 C 0.10 2.28 1.19 -10.26 -0.01 2.27 16 4 C -0.16 -3.76 7.15 71.98 0.51 -3.25 16 5 C -0.16 -3.20 6.61 31.13 0.21 -2.99 16 6 C 0.07 1.57 3.65 45.44 0.17 1.73 16 7 H 0.07 1.46 7.82 -2.39 -0.02 1.44 16 8 N -0.66 -17.28 2.83 -492.85 -1.39 -18.67 16 9 C 0.13 4.11 5.64 85.56 0.48 4.59 16 10 C -0.19 -7.61 5.42 -19.67 -0.11 -7.71 16 11 C -0.07 -3.03 9.67 22.22 0.21 -2.82 16 12 C -0.24 -11.93 9.80 22.73 0.22 -11.71 16 13 C 0.08 4.22 5.57 -21.29 -0.12 4.10 16 14 C -0.50 -27.60 9.07 23.46 0.21 -27.38 16 15 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 16 C 0.03 1.69 5.21 85.26 0.44 2.14 16 17 N -0.83 -44.01 10.82 21.83 0.24 -43.78 16 18 Si 0.98 38.87 29.58 68.60 2.03 40.90 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 22 C -0.19 -9.76 8.69 22.73 0.20 -9.56 16 23 C -0.10 -4.38 9.67 22.22 0.21 -4.16 16 24 C -0.06 -1.31 1.31 -51.65 -0.07 -1.37 16 25 C -0.12 -2.31 8.53 71.99 0.61 -1.69 16 26 C -0.13 -3.15 8.20 71.98 0.59 -2.56 16 27 H 0.04 0.72 6.76 -2.39 -0.02 0.70 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 0.68 8.01 -2.39 -0.02 0.66 16 30 H 0.06 1.20 7.19 -2.39 -0.02 1.18 16 31 H 0.10 2.49 4.95 -2.39 -0.01 2.48 16 32 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.07 1.44 7.86 -2.39 -0.02 1.42 16 34 H 0.10 1.80 7.65 -2.39 -0.02 1.78 16 35 H 0.34 9.18 8.34 -89.70 -0.75 8.43 16 36 H 0.03 0.84 8.07 -2.39 -0.02 0.82 16 37 H 0.07 2.10 8.08 -2.39 -0.02 2.08 16 38 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.09 4.33 8.06 -2.91 -0.02 4.31 16 40 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 41 H 0.10 5.50 6.11 -2.91 -0.02 5.49 16 42 H 0.10 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.06 1.23 7.84 -2.39 -0.02 1.21 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.09 7.34 -2.39 -0.02 1.07 16 46 H 0.07 1.98 5.70 -2.39 -0.01 1.97 16 47 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -57.45 372.76 4.58 -52.87 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: 0.19 Total: 37.63 kcal Atomic # 6 Polarization: -63.73 SS G_CDS: 4.96 Total: -58.77 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -1.16 Total: -62.45 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.44 Total: -10.18 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.90 kcal Total: -57.45 4.58 -52.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451492053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.418 kcal (2) G-P(sol) polarization free energy of solvation -57.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds