Wall clock time and date at job start Tue Mar 31 2020 07:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00514 * 2 1 4 4 C 1.52995 * 109.47601 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46773 * 64.99743 * 4 3 2 6 6 C 1.36943 * 119.99974 * 94.08303 * 5 4 3 7 7 H 1.07999 * 119.99825 * 217.74352 * 6 5 4 8 8 C 1.38813 * 119.99745 * 37.73757 * 6 5 4 9 9 N 1.31623 * 119.99519 * 213.77945 * 8 6 5 10 10 Si 1.86798 * 120.00206 * 33.78650 * 8 6 5 11 11 H 1.48508 * 109.47088 * 93.61006 * 10 8 6 12 12 H 1.48498 * 109.47129 * 213.61178 * 10 8 6 13 13 H 1.48494 * 109.46950 * 333.61239 * 10 8 6 14 14 C 1.46501 * 120.00282 * 274.07421 * 5 4 3 15 15 H 1.09006 * 110.66480 * 356.58544 * 14 5 4 16 16 C 1.54887 * 110.75969 * 233.14654 * 14 5 4 17 17 C 1.54264 * 104.19431 * 203.74110 * 16 14 5 18 18 C 1.53876 * 106.59835 * 23.61076 * 17 16 14 19 19 C 1.52994 * 110.03190 * 240.71234 * 18 17 16 20 20 C 1.50700 * 110.07192 * 119.30387 * 18 17 16 21 21 C 1.38241 * 120.00421 * 306.84586 * 20 18 17 22 22 C 1.38233 * 120.00025 * 179.79044 * 21 20 18 23 23 C 1.38230 * 119.99955 * 0.43930 * 22 21 20 24 24 C 1.38236 * 120.00342 * 359.81663 * 23 22 21 25 25 C 1.38232 * 119.99897 * 359.97438 * 24 23 22 26 26 C 1.54263 * 106.60007 * 359.97438 * 18 17 16 27 27 H 1.08998 * 109.46874 * 59.99710 * 1 2 3 28 28 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46848 * 300.00162 * 1 2 3 30 30 H 1.09006 * 109.46874 * 59.99591 * 3 2 1 31 31 H 1.09008 * 109.46699 * 300.00324 * 3 2 1 32 32 H 1.08998 * 109.47603 * 184.99668 * 4 3 2 33 33 H 1.09004 * 109.47094 * 304.99944 * 4 3 2 34 34 H 0.97002 * 119.99432 * 179.97438 * 9 8 6 35 35 H 1.08997 * 110.48322 * 322.42008 * 16 14 5 36 36 H 1.09002 * 110.48473 * 85.06178 * 16 14 5 37 37 H 1.08989 * 110.03520 * 264.32220 * 17 16 14 38 38 H 1.09003 * 110.06909 * 142.91462 * 17 16 14 39 39 H 1.08998 * 109.47392 * 177.16801 * 19 18 17 40 40 H 1.09004 * 109.47244 * 297.16716 * 19 18 17 41 41 H 1.09002 * 109.47357 * 57.16705 * 19 18 17 42 42 H 1.08002 * 119.99194 * 359.97438 * 21 20 18 43 43 H 1.07995 * 119.99691 * 180.28064 * 22 21 20 44 44 H 1.08007 * 119.99809 * 179.83438 * 23 22 21 45 45 H 1.08002 * 120.00120 * 179.97438 * 24 23 22 46 46 H 1.08004 * 120.00123 * 180.02562 * 25 24 23 47 47 H 1.08997 * 110.49029 * 217.71149 * 26 18 17 48 48 H 1.09003 * 110.60075 * 95.12690 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.3480 1.3479 -2.3104 7 1 4.0957 1.0499 -3.3174 8 6 5.0486 2.5259 -2.0902 9 7 4.8543 3.5638 -2.8759 10 14 6.2671 2.6379 -0.6788 11 1 7.6274 2.3027 -1.1715 12 1 6.2651 4.0184 -0.1315 13 1 5.8776 1.6817 0.3885 14 6 4.0207 -0.8958 -1.3689 15 1 3.7533 -1.3665 -0.4228 16 6 5.4175 -1.3661 -1.8452 17 6 5.1532 -2.7412 -2.4926 18 6 3.6731 -2.7518 -2.9133 19 6 2.9299 -3.8747 -2.1871 20 6 3.5605 -2.9387 -4.4044 21 6 4.2521 -2.1019 -5.2602 22 6 4.1522 -2.2762 -6.6278 23 6 3.3536 -3.2815 -7.1399 24 6 2.6579 -4.1151 -6.2843 25 6 2.7611 -3.9435 -4.9166 26 6 3.0894 -1.3830 -2.5063 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.9786 2.1764 0.0901 33 1 3.8508 0.5684 0.8427 34 1 5.3436 4.3871 -2.7218 35 1 5.8243 -0.6707 -2.5794 36 1 6.0954 -1.4674 -0.9977 37 1 5.3420 -3.5360 -1.7711 38 1 5.7908 -2.8717 -3.3670 39 1 1.8733 -3.8424 -2.4529 40 1 3.3491 -4.8371 -2.4807 41 1 3.0377 -3.7447 -1.1102 42 1 4.8728 -1.3138 -4.8600 43 1 4.6961 -1.6252 -7.2962 44 1 3.2735 -3.4160 -8.2086 45 1 2.0336 -4.9003 -6.6845 46 1 2.2178 -4.5950 -4.2481 47 1 2.0686 -1.4967 -2.1417 48 1 3.1184 -0.6887 -3.3461 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453596326.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:06 Heat of formation + Delta-G solvation = -6.388156 kcal Electronic energy + Delta-G solvation = -26392.400950 eV Core-core repulsion = 23026.574933 eV Total energy + Delta-G solvation = -3365.826018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.82504 -37.79445 -37.02473 -34.93359 -31.91644 -31.26382 -30.58560 -29.03280 -28.56955 -27.21013 -25.72335 -25.05633 -23.42619 -22.13718 -21.69089 -21.25862 -19.25923 -18.52801 -16.76518 -16.55295 -15.82711 -15.35482 -15.08307 -14.86622 -14.52956 -14.42854 -14.25908 -13.82263 -13.48462 -13.20073 -13.08134 -12.81309 -12.74469 -12.32543 -12.11619 -11.83920 -11.77392 -11.59647 -11.27249 -10.99530 -10.93598 -10.76106 -10.71918 -10.45105 -10.39863 -10.17366 -10.10448 -10.01227 -9.89010 -9.64552 -9.36616 -9.01339 -8.62031 -8.40435 -8.27393 -6.67618 -6.05384 -3.31126 1.66957 1.69662 3.37194 3.50563 3.55845 4.07836 4.42757 4.57242 4.91793 4.97566 5.06961 5.23360 5.27458 5.31631 5.39998 5.46912 5.60635 5.68971 5.70177 5.79547 5.83130 5.89540 5.93007 5.93805 6.04057 6.10180 6.13171 6.21525 6.25795 6.27680 6.31706 6.38320 6.43797 6.54232 6.57148 6.59115 6.64415 6.75314 6.81296 6.82014 6.83802 6.98785 7.12452 7.18875 7.29183 7.33464 7.78633 8.07708 8.46629 9.08114 9.77722 10.24792 11.10638 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012961 B = 0.005611 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.833705 B = 4988.867622 C = 5973.596729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.380 6.380 3 C 0.042 3.958 4 C 0.154 3.846 5 N -0.587 5.587 6 C -0.265 4.265 7 H 0.077 0.923 8 C 0.044 3.956 9 N -0.882 5.882 10 Si 0.842 3.158 11 H -0.291 1.291 12 H -0.297 1.297 13 H -0.262 1.262 14 C 0.185 3.815 15 H 0.059 0.941 16 C -0.138 4.138 17 C -0.108 4.108 18 C -0.030 4.030 19 C -0.134 4.134 20 C -0.053 4.053 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.135 4.135 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.111 4.111 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.029 0.971 30 H 0.028 0.972 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.129 0.871 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.121 0.879 47 H 0.058 0.942 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.079 -13.047 -0.047 14.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.298 6.298 3 C -0.037 4.037 4 C 0.028 3.972 5 N -0.307 5.307 6 C -0.393 4.393 7 H 0.094 0.906 8 C -0.157 4.157 9 N -0.521 5.521 10 Si 0.669 3.331 11 H -0.218 1.218 12 H -0.224 1.224 13 H -0.186 1.186 14 C 0.077 3.923 15 H 0.077 0.923 16 C -0.177 4.177 17 C -0.146 4.146 18 C -0.031 4.031 19 C -0.191 4.191 20 C -0.053 4.053 21 C -0.125 4.125 22 C -0.137 4.137 23 C -0.153 4.153 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.151 4.151 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.139 0.861 47 H 0.077 0.923 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.925 -13.013 -0.095 13.914 hybrid contribution 0.515 0.561 0.606 0.973 sum -4.410 -12.452 0.510 13.220 Atomic orbital electron populations 1.22600 0.83122 1.01444 0.99134 1.87901 1.17832 1.28906 1.95196 1.23440 0.97659 0.83784 0.98816 1.21229 0.89333 0.97696 0.88976 1.44003 1.74446 1.00268 1.11994 1.18551 1.30609 1.02045 0.88101 0.90598 1.25481 0.98183 0.95837 0.96233 1.70078 1.39841 1.01364 1.40860 0.87398 0.84415 0.76674 0.84635 1.21809 1.22376 1.18648 1.21239 0.91618 0.84044 0.95366 0.92260 1.22794 0.99483 0.95227 1.00226 1.22233 0.94277 0.98262 0.99807 1.20173 0.96172 0.96982 0.89746 1.21936 0.99615 0.97259 1.00327 1.19998 0.95536 0.94425 0.95382 1.21193 0.99392 0.98984 0.92972 1.21143 0.99101 0.98015 0.95484 1.21041 0.98476 0.96627 0.99189 1.21045 1.00085 0.99645 0.93676 1.21150 0.99698 0.98734 0.95010 1.22814 0.98964 0.92764 1.00525 0.94648 0.90718 0.95252 0.95380 0.92693 0.91461 0.94076 0.92868 0.90091 0.93304 0.92534 0.92365 0.92846 0.93216 0.92279 0.85355 0.86422 0.86840 0.86832 0.86122 0.92308 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.38 -6.88 9.92 -35.23 -0.35 -7.23 16 3 C 0.04 0.80 6.28 37.16 0.23 1.03 16 4 C 0.15 3.28 4.37 -4.04 -0.02 3.27 16 5 N -0.59 -13.28 2.09 -163.41 -0.34 -13.62 16 6 C -0.27 -6.92 8.11 -15.06 -0.12 -7.04 16 7 H 0.08 2.17 6.88 -52.49 -0.36 1.81 16 8 C 0.04 1.21 5.00 -17.43 -0.09 1.12 16 9 N -0.88 -25.79 13.97 55.49 0.78 -25.01 16 10 Si 0.84 20.79 26.35 -169.99 -4.48 16.31 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.30 -7.45 7.11 56.52 0.40 -7.04 16 13 H -0.26 -6.17 5.92 56.52 0.33 -5.84 16 14 C 0.18 3.62 2.82 -65.95 -0.19 3.43 16 15 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 16 C -0.14 -2.57 6.34 -25.07 -0.16 -2.73 16 17 C -0.11 -1.68 5.75 -25.61 -0.15 -1.83 16 18 C -0.03 -0.47 0.78 -154.55 -0.12 -0.59 16 19 C -0.13 -1.76 6.80 37.15 0.25 -1.51 16 20 C -0.05 -0.82 4.69 -104.62 -0.49 -1.31 16 21 C -0.11 -1.74 8.04 -39.58 -0.32 -2.06 16 22 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 23 C -0.14 -1.77 10.05 -39.59 -0.40 -2.16 16 24 C -0.13 -1.62 10.05 -39.58 -0.40 -2.02 16 25 C -0.13 -1.76 9.02 -39.58 -0.36 -2.12 16 26 C -0.11 -2.05 5.39 -25.09 -0.14 -2.18 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.16 8.14 -51.92 -0.42 0.74 16 32 H 0.07 1.53 4.63 -51.93 -0.24 1.29 16 33 H 0.04 0.83 8.01 -51.93 -0.42 0.41 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.08 1.70 7.08 -51.93 -0.37 1.34 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 38 H 0.06 0.90 7.06 -51.93 -0.37 0.53 16 39 H 0.05 0.67 7.38 -51.93 -0.38 0.29 16 40 H 0.05 0.58 7.73 -51.93 -0.40 0.18 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.13 2.25 7.87 -52.49 -0.41 1.84 16 43 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.11 1.21 8.06 -52.48 -0.42 0.78 16 45 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 46 H 0.12 1.46 5.97 -52.48 -0.31 1.14 16 47 H 0.06 1.09 7.71 -51.93 -0.40 0.69 16 48 H 0.07 1.58 5.79 -51.93 -0.30 1.28 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -28.64 368.18 -8.78 -37.42 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -8.20 Total: 3.80 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.73 Total: -17.22 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.43 Total: -38.63 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.35 Total: -7.23 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.48 Total: 16.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.64 -8.78 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596326.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.032 kcal (2) G-P(sol) polarization free energy of solvation -28.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds