Wall clock time and date at job start Tue Mar 31 2020 08:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 C 1.53004 * 113.25383 * 47.05260 * 3 2 1 5 5 C 1.53513 * 114.16880 * 179.97438 * 3 2 1 6 6 N 1.47490 * 87.92911 * 87.81770 * 5 3 2 7 7 C 1.46890 * 110.99881 * 138.70112 * 6 5 3 8 8 C 1.50698 * 109.47146 * 169.99777 * 7 6 5 9 9 C 1.38289 * 119.97869 * 270.23400 * 8 7 6 10 10 C 1.38237 * 120.11494 * 180.27323 * 9 8 7 11 11 C 1.38167 * 120.05858 * 359.74537 * 10 9 8 12 12 C 1.38709 * 119.93745 * 0.02562 * 11 10 9 13 13 O 1.35906 * 120.05198 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00229 * 0.02562 * 13 12 11 15 15 C 1.52994 * 109.47206 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47149 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99936 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00355 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99590 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00355 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47073 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47403 * 120.00120 * 20 18 16 23 23 H 1.48499 * 109.47351 * 240.00467 * 20 18 16 24 24 C 1.38125 * 119.96886 * 89.99848 * 8 7 6 25 25 C 1.47486 * 87.83218 * 27.00948 * 6 5 3 26 26 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46995 * 300.00270 * 1 2 3 28 28 H 1.09007 * 109.46828 * 59.99252 * 1 2 3 29 29 H 1.08999 * 109.46474 * 240.00274 * 2 1 3 30 30 H 1.08993 * 109.46878 * 120.00176 * 2 1 3 31 31 H 1.08995 * 109.46851 * 192.94521 * 4 3 2 32 32 H 1.08999 * 109.47213 * 312.94406 * 4 3 2 33 33 H 1.08997 * 109.47318 * 72.94821 * 4 3 2 34 34 H 1.09001 * 113.47538 * 333.05573 * 5 3 2 35 35 H 1.09000 * 113.47607 * 202.57803 * 5 3 2 36 36 H 1.09004 * 109.47265 * 50.00160 * 7 6 5 37 37 H 1.08998 * 109.47715 * 290.00188 * 7 6 5 38 38 H 1.08001 * 119.93832 * 0.02562 * 9 8 7 39 39 H 1.08006 * 119.97237 * 179.77245 * 10 9 8 40 40 H 1.07993 * 120.03379 * 179.97438 * 11 10 9 41 41 H 1.09001 * 109.46748 * 299.99921 * 14 13 12 42 42 H 1.08999 * 109.47366 * 59.99267 * 14 13 12 43 43 H 1.09001 * 109.47354 * 299.99735 * 15 14 13 44 44 H 1.09001 * 109.47032 * 60.00145 * 15 14 13 45 45 H 0.97000 * 119.99198 * 179.97438 * 19 18 16 46 46 H 1.08002 * 120.03152 * 0.02562 * 24 8 7 47 47 H 1.08994 * 113.47477 * 87.76280 * 25 6 5 48 48 H 1.09005 * 113.47338 * 218.22138 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.3384 2.3313 1.0290 5 6 3.5700 1.5682 0.0006 6 7 3.5221 1.5077 -1.4723 7 6 4.4573 2.4704 -2.0693 8 6 4.5639 2.2146 -3.5506 9 6 5.5157 1.3351 -4.0332 10 6 5.6197 1.1026 -5.3919 11 6 4.7690 1.7449 -6.2710 12 6 3.8103 2.6239 -5.7891 13 8 2.9726 3.2572 -6.6517 14 6 3.1349 2.9703 -8.0422 15 6 2.1111 3.7694 -8.8508 16 6 2.2827 3.4673 -10.3172 17 1 3.0455 2.7742 -10.6401 18 6 1.4653 4.0748 -11.2466 19 7 0.5361 4.9184 -10.8534 20 14 1.6776 3.6997 -13.0642 21 1 2.7838 2.7252 -13.2426 22 1 0.4190 3.1228 -13.6009 23 1 1.9986 4.9525 -13.7940 24 6 3.7075 2.8551 -4.4248 25 6 2.1612 2.0709 -1.3953 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.5737 3.3762 0.8270 32 1 0.2607 2.1822 0.9631 33 1 1.6811 2.0686 2.0298 34 1 4.0756 0.7156 0.4540 35 1 3.9270 2.5239 0.3845 36 1 5.4389 2.3565 -1.6094 37 1 4.0926 3.4836 -1.9009 38 1 6.1816 0.8320 -3.3477 39 1 6.3664 0.4181 -5.7666 40 1 4.8508 1.5633 -7.3324 41 1 4.1417 3.2471 -8.3551 42 1 2.9813 1.9049 -8.2137 43 1 1.1045 3.4922 -8.5378 44 1 2.2644 4.8349 -8.6794 45 1 -0.0387 5.3460 -11.5073 46 1 2.9620 3.5393 -4.0472 47 1 2.1423 3.1606 -1.3839 48 1 1.4729 1.6443 -2.1249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459627155.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:12 Heat of formation + Delta-G solvation = 0.984500 kcal Electronic energy + Delta-G solvation = -24052.859192 eV Core-core repulsion = 20687.352876 eV Total energy + Delta-G solvation = -3365.506315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.94375 -39.61784 -37.25829 -34.62230 -33.37228 -31.80858 -30.78965 -29.63691 -29.10913 -27.21913 -26.24243 -25.07277 -24.15990 -22.52949 -22.18230 -21.43587 -20.10108 -18.47008 -17.57913 -16.26510 -16.03232 -15.87206 -15.62169 -15.50744 -15.26468 -14.99858 -14.67108 -14.48215 -14.11639 -13.68005 -13.18244 -13.01018 -12.79302 -12.68354 -12.51260 -12.31971 -12.25864 -12.17045 -11.64953 -11.59684 -11.32692 -11.26941 -11.16194 -10.94991 -10.89375 -10.71957 -10.57996 -10.40122 -10.32386 -9.84050 -9.65163 -9.28307 -9.09159 -8.63313 -8.45127 -7.79351 -6.10549 -4.14978 1.49608 1.74406 3.26486 3.33529 3.37264 3.71329 3.87285 3.99647 4.13467 4.40879 4.43363 4.67494 4.76164 4.84379 4.98703 5.08829 5.09987 5.17185 5.26009 5.30758 5.32787 5.33669 5.39671 5.40250 5.47366 5.54487 5.57352 5.65306 5.69228 5.70282 5.80972 5.87741 5.95369 6.02567 6.05038 6.07045 6.13277 6.19956 6.22847 6.58946 6.60612 6.73926 6.76146 6.86377 7.03685 7.51572 7.64382 7.82303 8.08381 8.24265 8.90839 9.49376 11.01142 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.002490 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.353486 B =11244.332644 C =12137.249179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.089 4.089 4 C -0.141 4.141 5 C 0.003 3.997 6 N -0.461 5.461 7 C 0.061 3.939 8 C -0.040 4.040 9 C -0.153 4.153 10 C -0.081 4.081 11 C -0.212 4.212 12 C 0.145 3.855 13 O -0.317 6.317 14 C 0.066 3.934 15 C 0.025 3.975 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.153 4.153 25 C 0.006 3.994 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.122 0.878 47 H 0.070 0.930 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.002 -7.546 24.541 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.130 4.130 3 C -0.090 4.090 4 C -0.198 4.198 5 C -0.126 4.126 6 N -0.182 5.182 7 C -0.067 4.067 8 C -0.040 4.040 9 C -0.172 4.172 10 C -0.099 4.099 11 C -0.231 4.231 12 C 0.098 3.902 13 O -0.230 6.230 14 C -0.008 4.008 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.528 5.528 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.173 4.173 25 C -0.123 4.123 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.147 0.853 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.140 0.860 47 H 0.088 0.912 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.862 -7.896 24.118 26.046 hybrid contribution 0.195 0.596 -0.959 1.145 sum 6.058 -7.301 23.159 25.027 Atomic orbital electron populations 1.21843 0.95803 1.01556 1.01959 1.21182 0.95599 0.93666 1.02532 1.22013 0.94821 0.96673 0.95491 1.21810 1.01137 0.98617 0.98272 1.23971 0.96329 1.01621 0.90673 1.68955 1.02303 1.39292 1.07651 1.21605 0.98155 0.94780 0.92146 1.19262 0.95021 0.96069 0.93680 1.20722 1.00652 1.00678 0.95131 1.20869 0.97838 0.98132 0.93060 1.21371 0.99194 1.01676 1.00875 1.19141 0.89507 0.91165 0.90374 1.86164 1.53998 1.63778 1.19082 1.23315 1.01497 1.00325 0.75703 1.19126 0.93460 0.95669 0.92947 1.21014 1.18069 1.26673 0.90589 0.92316 1.24996 0.94982 0.94889 0.99373 1.69992 1.19973 1.28548 1.34281 0.86430 0.78110 0.78224 0.84625 1.19635 1.20824 1.20829 1.20222 1.02267 1.04513 0.90266 1.24080 0.92720 0.98399 0.97057 0.92814 0.92513 0.92519 0.90711 0.91984 0.92679 0.91569 0.92359 0.89831 0.91431 0.90084 0.92774 0.86595 0.86238 0.85327 0.93176 0.93165 0.95414 0.95433 0.92767 0.86001 0.91209 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.27 37.16 0.34 -0.79 16 2 C -0.09 -0.73 5.52 -26.73 -0.15 -0.88 16 3 C -0.09 -0.71 1.17 -153.98 -0.18 -0.89 16 4 C -0.14 -0.93 8.96 37.16 0.33 -0.60 16 5 C 0.00 0.02 6.84 -7.53 -0.05 -0.03 16 6 N -0.46 -4.82 6.13 -246.03 -1.51 -6.33 16 7 C 0.06 0.65 4.94 -4.98 -0.02 0.62 16 8 C -0.04 -0.54 5.46 -104.65 -0.57 -1.11 16 9 C -0.15 -2.01 9.70 -39.56 -0.38 -2.39 16 10 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 11 C -0.21 -3.47 9.04 -39.43 -0.36 -3.83 16 12 C 0.15 2.63 6.69 -39.22 -0.26 2.37 16 13 O -0.32 -6.73 10.14 -19.44 -0.20 -6.92 16 14 C 0.07 1.44 4.68 37.15 0.17 1.62 16 15 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 16 C -0.53 -14.78 9.11 -34.44 -0.31 -15.10 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 20 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.15 -2.43 9.64 -39.43 -0.38 -2.81 16 25 C 0.01 0.06 6.82 -7.54 -0.05 0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.37 6.35 -51.93 -0.33 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.36 7.90 -51.93 -0.41 -0.05 16 32 H 0.07 0.43 5.96 -51.93 -0.31 0.12 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 35 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 36 H 0.08 0.75 8.02 -51.93 -0.42 0.34 16 37 H 0.05 0.54 7.24 -51.93 -0.38 0.17 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 40 H 0.13 2.07 6.30 -52.49 -0.33 1.74 16 41 H 0.05 1.05 7.66 -51.93 -0.40 0.65 16 42 H 0.05 1.06 7.66 -51.93 -0.40 0.66 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 47 H 0.07 0.66 7.21 -51.93 -0.37 0.28 16 48 H 0.09 0.97 8.12 -51.93 -0.42 0.55 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -30.40 384.51 -11.06 -41.46 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.35 Total: -1.28 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -2.52 Total: -23.19 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: -0.77 Total: -32.24 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.20 Total: -6.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.40 -11.06 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459627155.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.445 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds