Wall clock time and date at job start Tue Mar 31 2020 09:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47283 * 2 1 4 4 C 1.52999 * 109.47283 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47146 * 180.36069 * 4 3 2 6 6 H 1.08997 * 109.46791 * 303.03201 * 5 4 3 7 7 C 1.53005 * 109.46799 * 183.03822 * 5 4 3 8 8 C 1.52992 * 109.47198 * 67.67332 * 7 5 4 9 9 C 1.52996 * 109.47212 * 63.03765 * 5 4 3 10 10 C 1.50699 * 109.46932 * 184.99899 * 9 5 4 11 11 O 1.21283 * 120.00453 * 359.97438 * 10 9 5 12 12 N 1.34785 * 120.00006 * 179.97438 * 10 9 5 13 13 C 1.39231 * 119.99933 * 184.85689 * 12 10 9 14 14 C 1.39484 * 119.83477 * 214.24631 * 13 12 10 15 15 C 1.36373 * 120.17289 * 179.71649 * 14 13 12 16 16 C 1.40878 * 119.82503 * 0.55705 * 15 14 13 17 17 C 1.41146 * 120.16317 * 179.69889 * 16 15 14 18 18 H 1.07998 * 120.00320 * 158.75660 * 17 16 15 19 19 C 1.39910 * 119.99882 * 338.75514 * 17 16 15 20 20 N 1.30873 * 120.00114 * 331.76543 * 19 17 16 21 21 Si 1.86799 * 120.00159 * 151.77048 * 19 17 16 22 22 H 1.48510 * 109.47066 * 94.98615 * 21 19 17 23 23 H 1.48501 * 109.47303 * 214.98338 * 21 19 17 24 24 H 1.48498 * 109.47019 * 334.98614 * 21 19 17 25 25 C 1.40866 * 119.67078 * 359.71623 * 16 15 14 26 26 C 1.36372 * 119.83203 * 0.02562 * 25 16 15 27 27 H 1.08996 * 109.47135 * 299.99868 * 1 2 3 28 28 H 1.09000 * 109.47044 * 59.99279 * 1 2 3 29 29 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47135 * 240.00132 * 2 1 3 31 31 H 1.09000 * 109.47044 * 120.00721 * 2 1 3 32 32 H 1.09008 * 109.46773 * 60.00319 * 3 2 1 33 33 H 1.08994 * 109.47317 * 300.00130 * 3 2 1 34 34 H 1.08996 * 109.46906 * 60.35570 * 4 3 2 35 35 H 1.09008 * 109.46995 * 300.36070 * 4 3 2 36 36 H 1.09005 * 109.46640 * 187.67509 * 7 5 4 37 37 H 1.09001 * 109.46767 * 307.66821 * 7 5 4 38 38 H 1.08998 * 109.47449 * 300.37416 * 8 7 5 39 39 H 1.08996 * 109.47268 * 60.38503 * 8 7 5 40 40 H 1.09006 * 109.46779 * 180.38487 * 8 7 5 41 41 H 1.08997 * 109.47406 * 65.00072 * 9 5 4 42 42 H 1.08999 * 109.47087 * 304.99624 * 9 5 4 43 43 H 0.96997 * 119.99828 * 4.86050 * 12 10 9 44 44 H 1.07999 * 119.91004 * 0.02562 * 14 13 12 45 45 H 1.07996 * 120.08581 * 180.27293 * 15 14 13 46 46 H 0.96994 * 120.00357 * 180.02562 * 20 19 17 47 47 H 1.07996 * 120.08556 * 179.97438 * 25 16 15 48 48 H 1.08002 * 119.91670 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0084 6 1 3.6726 3.4197 -0.8495 7 6 5.6081 2.8860 -0.0687 8 6 6.0500 2.3707 -1.4398 9 6 3.6340 3.5755 1.2988 10 6 4.0298 5.0288 1.2534 11 8 4.6118 5.4689 0.2846 12 7 3.7370 5.8397 2.2894 13 6 4.0114 7.2022 2.2062 14 6 4.4031 7.9022 3.3474 15 6 4.6791 9.2356 3.2725 16 6 4.5563 9.9085 2.0410 17 6 4.8340 11.2898 1.9568 18 1 5.0768 11.7347 1.0031 19 6 4.7947 12.0827 3.1088 20 7 4.0134 11.7512 4.1050 21 14 5.8572 13.6147 3.2250 22 1 5.0639 14.7999 2.8107 23 1 6.3181 13.7925 4.6254 24 1 7.0341 13.4697 2.3311 25 6 4.1546 9.1960 0.8941 26 6 3.8871 7.8617 0.9834 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9343 -0.8940 35 1 3.9337 0.9229 0.8859 36 1 5.9784 3.9012 0.0746 37 1 6.0116 2.2388 0.7101 38 1 5.6741 1.3581 -1.5858 39 1 5.6521 3.0218 -2.2181 40 1 7.1387 2.3651 -1.4922 41 1 4.1125 3.0951 2.1521 42 1 2.5513 3.4967 1.3974 43 1 3.3352 5.4741 3.0930 44 1 4.4929 7.3857 4.2916 45 1 4.9866 9.7752 4.1561 46 1 3.9858 12.3011 4.9035 47 1 4.0578 9.7052 -0.0533 48 1 3.5786 7.3142 0.1051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524208902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:50 Heat of formation + Delta-G solvation = -59.545360 kcal Electronic energy + Delta-G solvation = -24208.134627 eV Core-core repulsion = 20840.003540 eV Total energy + Delta-G solvation = -3368.131087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.83856 -37.83902 -36.79093 -34.68107 -34.20382 -32.99781 -30.91951 -29.67760 -29.45393 -28.49595 -25.60047 -24.40012 -23.08451 -21.68372 -21.17785 -20.82829 -19.91528 -19.36329 -17.39785 -16.94596 -16.18803 -15.60465 -15.20818 -15.14181 -14.72393 -14.43298 -13.96249 -13.89253 -13.39210 -13.29987 -13.04101 -13.01274 -12.66566 -12.53374 -12.15051 -12.05866 -11.89274 -11.65338 -11.58016 -11.41654 -11.35022 -11.14559 -11.00495 -10.94165 -10.88241 -10.54060 -10.52774 -10.36069 -10.27536 -10.02842 -9.68345 -9.38912 -9.00917 -8.62932 -7.53350 -7.06670 -6.84771 -4.25809 2.59956 2.99344 3.05607 3.11392 3.13453 3.43377 3.84506 3.90525 4.53299 4.55233 4.67931 4.80237 4.87780 5.05177 5.06774 5.24110 5.32965 5.43617 5.48042 5.51950 5.54625 5.61836 5.67249 5.71027 5.75885 5.80863 5.83276 5.90552 5.97313 6.09869 6.16118 6.18810 6.20794 6.28024 6.42758 6.49724 6.58867 6.81539 6.97053 7.02752 7.18627 7.31363 7.58812 7.73538 7.92834 8.03812 8.27413 8.35471 8.57733 8.83740 8.86440 9.03531 10.06934 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026510 B = 0.002515 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.964206 B =11131.111397 C =11684.978346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.069 4.069 6 H 0.078 0.922 7 C -0.126 4.126 8 C -0.148 4.148 9 C -0.138 4.138 10 C 0.496 3.504 11 O -0.530 6.530 12 N -0.653 5.653 13 C -0.014 4.014 14 C -0.108 4.108 15 C -0.166 4.166 16 C 0.109 3.891 17 C -0.462 4.462 18 H 0.080 0.920 19 C 0.083 3.917 20 N -0.777 5.777 21 Si 0.900 3.100 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.222 4.222 26 C -0.069 4.069 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.393 0.607 44 H 0.088 0.912 45 H 0.112 0.888 46 H 0.282 0.718 47 H 0.094 0.906 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.025 -18.689 -2.597 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.153 4.153 5 C -0.088 4.088 6 H 0.096 0.904 7 C -0.164 4.164 8 C -0.205 4.205 9 C -0.178 4.178 10 C 0.283 3.717 11 O -0.407 6.407 12 N -0.296 5.296 13 C -0.106 4.106 14 C -0.128 4.128 15 C -0.186 4.186 16 C 0.106 3.894 17 C -0.490 4.490 18 H 0.098 0.902 19 C -0.137 4.137 20 N -0.401 5.401 21 Si 0.723 3.277 22 H -0.195 1.195 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.242 4.242 26 C -0.089 4.089 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.226 0.774 44 H 0.107 0.893 45 H 0.130 0.870 46 H 0.093 0.907 47 H 0.112 0.888 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.722 -18.317 -3.070 18.771 hybrid contribution 0.136 0.551 0.718 0.915 sum -2.586 -17.766 -2.353 18.107 Atomic orbital electron populations 1.21786 0.96072 1.01362 1.01905 1.21534 0.95707 0.97187 1.01770 1.21726 0.95738 0.96454 1.02330 1.21712 0.95051 0.96481 1.02071 1.20923 0.96180 0.94711 0.96969 0.90386 1.21693 0.94764 1.03019 0.96881 1.21753 1.00565 1.00432 0.97734 1.21796 1.02730 0.92948 1.00347 1.20628 0.79599 0.87959 0.83537 1.90656 1.40500 1.76582 1.33011 1.43067 1.61313 1.07256 1.17987 1.17094 1.16326 0.81646 0.95555 1.20178 1.02031 0.95309 0.95274 1.20716 1.06708 0.92441 0.98741 1.17610 0.87678 0.93109 0.90981 1.19526 1.41587 0.93040 0.94851 0.90160 1.25945 0.93376 0.99454 0.94935 1.69914 1.27067 1.37261 1.05846 0.86446 0.81496 0.81036 0.78695 1.19501 1.19931 1.18186 1.20593 1.11225 0.93963 0.98436 1.20220 0.99374 0.94014 0.95308 0.92727 0.92772 0.93019 0.92253 0.92199 0.91739 0.91950 0.91590 0.92126 0.89671 0.93027 0.93242 0.92723 0.93247 0.89539 0.89146 0.77399 0.89344 0.86987 0.90708 0.88807 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.13 -1.04 4.95 -26.73 -0.13 -1.17 16 4 C -0.12 -1.02 4.56 -26.73 -0.12 -1.14 16 5 C -0.07 -0.79 1.50 -90.62 -0.14 -0.92 16 6 H 0.08 1.04 7.95 -51.93 -0.41 0.62 16 7 C -0.13 -1.57 5.18 -26.73 -0.14 -1.70 16 8 C -0.15 -1.63 9.72 37.15 0.36 -1.27 16 9 C -0.14 -1.61 5.01 -27.89 -0.14 -1.75 16 10 C 0.50 8.38 7.21 -10.98 -0.08 8.30 16 11 O -0.53 -10.99 11.73 5.56 0.07 -10.92 16 12 N -0.65 -11.53 5.31 -9.74 -0.05 -11.58 16 13 C -0.01 -0.32 6.27 -83.57 -0.52 -0.84 16 14 C -0.11 -2.49 9.89 -39.79 -0.39 -2.89 16 15 C -0.17 -4.30 8.71 -39.26 -0.34 -4.64 16 16 C 0.11 2.95 5.59 -106.80 -0.60 2.35 16 17 C -0.46 -12.32 8.98 -37.85 -0.34 -12.66 16 18 H 0.08 2.07 7.98 -52.49 -0.42 1.66 16 19 C 0.08 2.07 4.90 -17.33 -0.08 1.99 16 20 N -0.78 -19.76 11.42 55.55 0.63 -19.12 16 21 Si 0.90 18.41 29.64 -169.99 -5.04 13.37 16 22 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 25 C -0.22 -5.73 9.74 -39.26 -0.38 -6.11 16 26 C -0.07 -1.68 8.57 -39.79 -0.34 -2.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.53 6.38 -51.92 -0.33 0.20 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.57 6.52 -51.93 -0.34 0.23 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.08 1.35 5.85 -51.93 -0.30 1.05 16 37 H 0.05 0.58 8.13 -51.93 -0.42 0.15 16 38 H 0.05 0.46 6.58 -51.93 -0.34 0.12 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.91 6.26 -51.93 -0.33 0.58 16 43 H 0.39 5.51 8.81 -40.82 -0.36 5.15 16 44 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 45 H 0.11 2.94 6.31 -52.49 -0.33 2.61 16 46 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 47 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16 48 H 0.10 2.39 6.47 -52.49 -0.34 2.05 16 LS Contribution 379.13 15.07 5.71 5.71 Total: -1.00 -29.24 379.13 -9.99 -39.23 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -8.13 Total: 9.58 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -3.18 Total: -26.28 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.58 Total: -30.70 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.04 Total: 13.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.24 -9.99 -39.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524208902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.311 kcal (2) G-P(sol) polarization free energy of solvation -29.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds