Wall clock time and date at job start Tue Mar 31 2020 09:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47283 * 2 1 4 4 C 1.52999 * 109.47283 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47146 * 180.36069 * 4 3 2 6 6 H 1.08997 * 109.46791 * 303.03201 * 5 4 3 7 7 C 1.53005 * 109.46799 * 183.03822 * 5 4 3 8 8 C 1.52992 * 109.47198 * 67.67332 * 7 5 4 9 9 C 1.52996 * 109.47212 * 63.03765 * 5 4 3 10 10 C 1.50699 * 109.46932 * 184.99899 * 9 5 4 11 11 O 1.21283 * 120.00453 * 359.97438 * 10 9 5 12 12 N 1.34785 * 120.00006 * 179.97438 * 10 9 5 13 13 C 1.39231 * 119.99933 * 184.85689 * 12 10 9 14 14 C 1.39484 * 119.83477 * 214.24631 * 13 12 10 15 15 C 1.36373 * 120.17289 * 179.71649 * 14 13 12 16 16 C 1.40878 * 119.82503 * 0.55705 * 15 14 13 17 17 C 1.41146 * 120.16317 * 179.69889 * 16 15 14 18 18 H 1.07998 * 120.00320 * 158.75660 * 17 16 15 19 19 C 1.39910 * 119.99882 * 338.75514 * 17 16 15 20 20 N 1.30873 * 120.00114 * 331.76543 * 19 17 16 21 21 Si 1.86799 * 120.00159 * 151.77048 * 19 17 16 22 22 H 1.48510 * 109.47066 * 94.98615 * 21 19 17 23 23 H 1.48501 * 109.47303 * 214.98338 * 21 19 17 24 24 H 1.48498 * 109.47019 * 334.98614 * 21 19 17 25 25 C 1.40866 * 119.67078 * 359.71623 * 16 15 14 26 26 C 1.36372 * 119.83203 * 0.02562 * 25 16 15 27 27 H 1.08996 * 109.47135 * 299.99868 * 1 2 3 28 28 H 1.09000 * 109.47044 * 59.99279 * 1 2 3 29 29 H 1.08996 * 109.47234 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47135 * 240.00132 * 2 1 3 31 31 H 1.09000 * 109.47044 * 120.00721 * 2 1 3 32 32 H 1.09008 * 109.46773 * 60.00319 * 3 2 1 33 33 H 1.08994 * 109.47317 * 300.00130 * 3 2 1 34 34 H 1.08996 * 109.46906 * 60.35570 * 4 3 2 35 35 H 1.09008 * 109.46995 * 300.36070 * 4 3 2 36 36 H 1.09005 * 109.46640 * 187.67509 * 7 5 4 37 37 H 1.09001 * 109.46767 * 307.66821 * 7 5 4 38 38 H 1.08998 * 109.47449 * 300.37416 * 8 7 5 39 39 H 1.08996 * 109.47268 * 60.38503 * 8 7 5 40 40 H 1.09006 * 109.46779 * 180.38487 * 8 7 5 41 41 H 1.08997 * 109.47406 * 65.00072 * 9 5 4 42 42 H 1.08999 * 109.47087 * 304.99624 * 9 5 4 43 43 H 0.96997 * 119.99828 * 4.86050 * 12 10 9 44 44 H 1.07999 * 119.91004 * 0.02562 * 14 13 12 45 45 H 1.07996 * 120.08581 * 180.27293 * 15 14 13 46 46 H 0.96994 * 120.00357 * 180.02562 * 20 19 17 47 47 H 1.07996 * 120.08556 * 179.97438 * 25 16 15 48 48 H 1.08002 * 119.91670 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8849 0.0084 6 1 3.6726 3.4197 -0.8495 7 6 5.6081 2.8860 -0.0687 8 6 6.0500 2.3707 -1.4398 9 6 3.6340 3.5755 1.2988 10 6 4.0298 5.0288 1.2534 11 8 4.6118 5.4689 0.2846 12 7 3.7370 5.8397 2.2894 13 6 4.0114 7.2022 2.2062 14 6 4.4031 7.9022 3.3474 15 6 4.6791 9.2356 3.2725 16 6 4.5563 9.9085 2.0410 17 6 4.8340 11.2898 1.9568 18 1 5.0768 11.7347 1.0031 19 6 4.7947 12.0827 3.1088 20 7 4.0134 11.7512 4.1050 21 14 5.8572 13.6147 3.2250 22 1 5.0639 14.7999 2.8107 23 1 6.3181 13.7925 4.6254 24 1 7.0341 13.4697 2.3311 25 6 4.1546 9.1960 0.8941 26 6 3.8871 7.8617 0.9834 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 0.9343 -0.8940 35 1 3.9337 0.9229 0.8859 36 1 5.9784 3.9012 0.0746 37 1 6.0116 2.2388 0.7101 38 1 5.6741 1.3581 -1.5858 39 1 5.6521 3.0218 -2.2181 40 1 7.1387 2.3651 -1.4922 41 1 4.1125 3.0951 2.1521 42 1 2.5513 3.4967 1.3974 43 1 3.3352 5.4741 3.0930 44 1 4.4929 7.3857 4.2916 45 1 4.9866 9.7752 4.1561 46 1 3.9858 12.3011 4.9035 47 1 4.0578 9.7052 -0.0533 48 1 3.5786 7.3142 0.1051 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000524208902.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:05:49 Heat of formation + Delta-G solvation = -73.446249 kcal Electronic energy + Delta-G solvation = -24208.737414 eV Core-core repulsion = 20840.003540 eV Total energy + Delta-G solvation = -3368.733875 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27388 -39.35413 -38.01894 -36.16346 -35.17929 -34.75015 -31.94800 -31.45287 -30.94940 -29.75233 -27.01271 -25.69369 -23.92848 -23.39615 -22.61746 -21.80433 -21.29099 -20.51646 -19.30985 -18.37823 -17.76743 -17.01270 -16.42737 -16.30661 -15.80679 -15.71321 -15.37777 -15.16148 -14.64751 -14.45445 -14.28302 -14.02806 -13.95804 -13.86203 -13.63218 -13.57018 -13.26343 -12.91503 -12.80520 -12.69697 -12.44403 -12.34629 -12.23819 -12.11282 -11.92568 -11.77021 -11.58427 -11.55694 -11.37420 -11.16976 -11.13575 -11.07689 -10.66003 -10.29920 -9.48583 -8.94005 -8.70506 -6.23726 0.82607 1.12622 1.37069 1.43016 1.54123 1.90729 2.19700 2.47863 2.67914 3.70744 3.76323 3.84260 3.96010 4.16293 4.20493 4.33385 4.38941 4.39884 4.47303 4.56514 4.60513 4.65800 4.73339 4.82350 4.87742 4.92679 4.95265 4.98331 5.09483 5.10161 5.15650 5.18696 5.21504 5.22072 5.30054 5.32611 5.41224 5.46059 5.48382 5.56313 5.61746 5.63876 5.64536 5.88776 6.03252 6.11525 6.35854 6.62194 6.82966 6.89543 6.99438 7.52362 8.23397 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.026510 B = 0.002515 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.964206 B =11131.111397 C =11684.978346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.106 4.106 5 C -0.066 4.066 6 H 0.052 0.948 7 C -0.126 4.126 8 C -0.146 4.146 9 C -0.126 4.126 10 C 0.493 3.507 11 O -0.571 6.571 12 N -0.649 5.649 13 C 0.002 3.998 14 C -0.107 4.107 15 C -0.185 4.185 16 C 0.078 3.922 17 C -0.502 4.502 18 H 0.073 0.927 19 C 0.046 3.954 20 N -0.805 5.805 21 Si 0.975 3.025 22 H -0.260 1.260 23 H -0.260 1.260 24 H -0.263 1.263 25 C -0.244 4.244 26 C -0.080 4.080 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.415 0.585 44 H 0.123 0.877 45 H 0.103 0.897 46 H 0.293 0.707 47 H 0.090 0.910 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.192 -20.885 -1.191 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.162 4.162 4 C -0.143 4.143 5 C -0.085 4.085 6 H 0.071 0.929 7 C -0.164 4.164 8 C -0.203 4.203 9 C -0.166 4.166 10 C 0.282 3.718 11 O -0.450 6.450 12 N -0.295 5.295 13 C -0.092 4.092 14 C -0.127 4.127 15 C -0.205 4.205 16 C 0.076 3.924 17 C -0.530 4.530 18 H 0.091 0.909 19 C -0.172 4.172 20 N -0.429 5.429 21 Si 0.795 3.205 22 H -0.184 1.184 23 H -0.184 1.184 24 H -0.187 1.187 25 C -0.264 4.264 26 C -0.100 4.100 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.069 0.931 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.251 0.749 44 H 0.141 0.859 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.917 -20.555 -1.648 20.826 hybrid contribution 0.144 1.085 0.231 1.118 sum -2.773 -19.470 -1.417 19.717 Atomic orbital electron populations 1.21799 0.96020 1.01781 1.01691 1.21512 0.95753 0.96452 1.02248 1.21717 0.95307 0.97165 1.02021 1.21628 0.95304 0.94307 1.03051 1.20891 0.95419 0.96299 0.95917 0.92901 1.21651 0.95558 1.01009 0.98133 1.21736 1.00729 1.01233 0.96580 1.21849 1.04433 0.88679 1.01594 1.21645 0.78110 0.89859 0.82163 1.90658 1.42067 1.77769 1.34533 1.43050 1.61643 1.05304 1.19470 1.17168 1.13639 0.83919 0.94451 1.20462 1.00821 0.94548 0.96912 1.20749 1.08005 0.93704 0.98036 1.17926 0.88754 0.93888 0.91845 1.19721 1.43967 0.93618 0.95701 0.90895 1.26743 0.93940 1.02535 0.93989 1.69915 1.27665 1.38840 1.06495 0.85310 0.79153 0.76895 0.79093 1.18441 1.18439 1.18654 1.20723 1.12384 0.94907 0.98364 1.20322 0.99800 0.93605 0.96322 0.92707 0.93256 0.92328 0.92107 0.91383 0.91343 0.93035 0.91205 0.90515 0.93646 0.91269 0.91034 0.94282 0.93053 0.86526 0.86689 0.74856 0.85946 0.87898 0.89598 0.89145 0.88279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.44 5.93 30.59 0.18 -1.26 16 3 C -0.12 -1.73 4.95 30.59 0.15 -1.57 16 4 C -0.11 -1.53 4.56 30.59 0.14 -1.39 16 5 C -0.07 -1.39 1.50 -10.79 -0.02 -1.41 16 6 H 0.05 1.39 7.95 -2.39 -0.02 1.37 16 7 C -0.13 -2.97 5.18 30.59 0.16 -2.81 16 8 C -0.15 -3.08 9.72 71.98 0.70 -2.38 16 9 C -0.13 -2.57 5.01 29.85 0.15 -2.42 16 10 C 0.49 16.01 7.21 87.66 0.63 16.64 16 11 O -0.57 -23.94 11.73 -3.04 -0.04 -23.97 16 12 N -0.65 -21.73 5.31 -303.10 -1.61 -23.34 16 13 C 0.00 0.08 6.27 38.57 0.24 0.32 16 14 C -0.11 -4.91 9.89 22.13 0.22 -4.69 16 15 C -0.19 -9.79 8.71 22.48 0.20 -9.59 16 16 C 0.08 4.43 5.59 -21.28 -0.12 4.31 16 17 C -0.50 -27.93 8.98 23.39 0.21 -27.72 16 18 H 0.07 3.99 7.98 -2.91 -0.02 3.96 16 19 C 0.05 2.33 4.90 85.24 0.42 2.75 16 20 N -0.80 -41.46 11.42 21.82 0.25 -41.21 16 21 Si 0.98 38.08 29.64 68.60 2.03 40.12 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 24 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 25 C -0.24 -13.19 9.74 22.48 0.22 -12.97 16 26 C -0.08 -4.02 8.57 22.14 0.19 -3.83 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.89 6.38 -2.38 -0.02 0.88 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.07 0.99 6.52 -2.39 -0.02 0.97 16 35 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.04 1.45 5.85 -2.38 -0.01 1.44 16 37 H 0.07 1.37 8.13 -2.39 -0.02 1.35 16 38 H 0.07 1.18 6.58 -2.39 -0.02 1.17 16 39 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.12 1.86 6.26 -2.39 -0.01 1.85 16 43 H 0.41 10.31 8.81 -92.71 -0.82 9.50 16 44 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 45 H 0.10 5.54 6.31 -2.91 -0.02 5.52 16 46 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 47 H 0.09 4.75 8.06 -2.91 -0.02 4.73 16 48 H 0.10 4.89 6.47 -2.91 -0.02 4.87 16 Total: -1.00 -66.63 379.13 5.14 -61.49 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.12 Total: 36.07 kcal Atomic # 6 Polarization: -53.54 SS G_CDS: 4.38 Total: -49.16 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -1.36 Total: -64.55 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.04 Total: -23.97 kcal Atomic # 14 Polarization: 38.08 SS G_CDS: 2.03 Total: 40.12 kcal Total: -66.63 5.14 -61.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524208902.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.955 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds