Wall clock time and date at job start Tue Mar 31 2020 08:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.52998 * 109.46863 * 120.00395 * 2 1 3 5 5 C 1.52999 * 109.47361 * 79.88081 * 4 2 1 6 6 C 1.53003 * 109.47069 * 64.90799 * 5 4 2 7 7 C 1.53000 * 109.46961 * 304.90640 * 5 4 2 8 8 C 1.53001 * 109.47263 * 184.90781 * 5 4 2 9 9 N 1.46496 * 109.47438 * 180.02562 * 8 5 4 10 10 C 1.34776 * 120.00233 * 179.97438 * 9 8 5 11 11 O 1.21584 * 119.99812 * 0.02562 * 10 9 8 12 12 C 1.47643 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.40012 * 119.89337 * 0.25218 * 12 10 9 14 14 C 1.36322 * 120.10149 * 180.25426 * 13 12 10 15 15 C 1.40885 * 119.89407 * 359.47185 * 14 13 12 16 16 C 1.41104 * 120.10668 * 180.29765 * 15 14 13 17 17 H 1.07995 * 120.00065 * 155.59932 * 16 15 14 18 18 C 1.40227 * 119.99874 * 335.60450 * 16 15 14 19 19 N 1.30644 * 119.99966 * 332.32009 * 18 16 15 20 20 Si 1.86797 * 120.00184 * 152.32553 * 18 16 15 21 21 H 1.48499 * 109.47560 * 59.99462 * 20 18 16 22 22 H 1.48505 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46871 * 299.99676 * 20 18 16 24 24 C 1.40888 * 119.79144 * 0.27968 * 15 14 13 25 25 C 1.36323 * 119.89384 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47195 * 50.73590 * 1 2 3 27 27 H 1.08998 * 109.47182 * 170.73437 * 1 2 3 28 28 H 1.08998 * 109.46899 * 290.73472 * 1 2 3 29 29 H 1.09000 * 109.46590 * 240.00224 * 2 1 3 30 30 H 1.08998 * 109.47232 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47191 * 300.00716 * 3 2 1 32 32 H 1.09004 * 109.46771 * 60.00200 * 3 2 1 33 33 H 1.09000 * 109.47400 * 319.87697 * 4 2 1 34 34 H 1.09005 * 109.46797 * 199.87886 * 4 2 1 35 35 H 1.09001 * 109.46963 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46923 * 300.00101 * 6 5 4 37 37 H 1.09001 * 109.47293 * 60.00013 * 6 5 4 38 38 H 1.08994 * 109.47049 * 316.31420 * 7 5 4 39 39 H 1.09005 * 109.46861 * 76.31401 * 7 5 4 40 40 H 1.09000 * 109.46856 * 196.30862 * 7 5 4 41 41 H 1.09002 * 109.47058 * 59.99797 * 8 5 4 42 42 H 1.09006 * 109.47316 * 300.00256 * 8 5 4 43 43 H 0.97001 * 119.99504 * 359.97438 * 9 8 5 44 44 H 1.07998 * 119.94774 * 0.02966 * 13 12 10 45 45 H 1.07996 * 120.05279 * 179.74807 * 14 13 12 46 46 H 0.97002 * 120.00465 * 180.02562 * 19 18 16 47 47 H 1.07997 * 120.05638 * 180.02562 * 24 15 14 48 48 H 1.08000 * 119.94555 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.9710 -2.2338 1.0287 6 6 2.9346 -2.6303 -0.0917 7 6 0.5451 -2.6277 0.6383 8 6 2.3645 -2.9558 2.3190 9 7 2.2991 -4.4040 2.1077 10 6 2.6063 -5.2464 3.1139 11 8 2.9372 -4.8044 4.1971 12 6 2.5398 -6.7059 2.9011 13 6 2.1624 -7.2124 1.6515 14 6 2.0946 -8.5592 1.4519 15 6 2.4157 -9.4418 2.5020 16 6 2.3531 -10.8366 2.2984 17 1 2.9449 -11.4991 2.9126 18 6 1.5225 -11.3626 1.2985 19 7 0.4494 -10.7137 0.9324 20 14 1.9503 -12.9913 0.4900 21 1 1.9921 -14.0597 1.5205 22 1 0.9206 -13.3249 -0.5268 23 1 3.2782 -12.8844 -0.1662 24 6 2.7999 -8.9273 3.7560 25 6 2.8598 -7.5789 3.9478 26 1 -0.3634 0.6504 -0.7957 27 1 -0.3633 -1.0142 -0.1655 28 1 -0.3633 0.3638 0.9611 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.4202 -0.4501 2.1039 34 1 3.0723 -0.4289 1.4416 35 1 2.8858 -3.7079 -0.2485 36 1 2.6543 -2.1159 -1.0109 37 1 3.9505 -2.3496 0.1864 38 1 -0.1648 -2.1023 1.2770 39 1 0.3658 -2.3584 -0.4026 40 1 0.4185 -3.7033 0.7623 41 1 1.6780 -2.6733 3.1172 42 1 3.3804 -2.6751 2.5972 43 1 2.0346 -4.7565 1.2436 44 1 1.9212 -6.5350 0.8457 45 1 1.7995 -8.9490 0.4889 46 1 -0.1254 -11.0776 0.2410 47 1 3.0474 -9.5999 4.5639 48 1 3.1546 -7.1836 4.9086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533990039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:52 Heat of formation + Delta-G solvation = -47.980125 kcal Electronic energy + Delta-G solvation = -24601.126986 eV Core-core repulsion = 21233.497405 eV Total energy + Delta-G solvation = -3367.629581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.68118 -38.44549 -37.01475 -34.91635 -33.88745 -32.37645 -30.17339 -29.47136 -28.54282 -27.17514 -26.63490 -26.30289 -24.99083 -21.91287 -20.97184 -20.39408 -19.60723 -18.85926 -17.52262 -16.91434 -15.82289 -15.49168 -15.24932 -14.90101 -14.58160 -14.16046 -14.00305 -13.69628 -13.48504 -13.36568 -13.23999 -12.99577 -12.68681 -12.45423 -12.18199 -12.14954 -11.94935 -11.91362 -11.75129 -11.62692 -11.33590 -11.28437 -11.02015 -10.95161 -10.90763 -10.69293 -10.63227 -10.43184 -10.16736 -10.10369 -9.53489 -9.27857 -8.92305 -8.50885 -7.72156 -7.58792 -7.12488 -4.58113 2.26533 2.89938 2.93254 2.99302 3.03255 3.72380 3.86089 3.88064 4.51757 4.53056 4.65103 4.66032 4.90175 4.92358 5.05429 5.36229 5.41838 5.44328 5.52986 5.55716 5.60987 5.62255 5.70340 5.74037 5.77749 5.83222 5.88922 5.94241 5.99138 6.03415 6.07056 6.11869 6.18989 6.22079 6.32004 6.34315 6.37800 6.76057 6.81150 6.96835 7.08222 7.12207 7.42917 7.66243 7.76377 7.85535 8.06241 8.29511 8.37307 8.61209 8.75252 9.13679 9.81621 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.002785 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.464985 B =10050.595234 C =10870.564785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.102 4.102 5 C -0.075 4.075 6 C -0.144 4.144 7 C -0.151 4.151 8 C 0.134 3.866 9 N -0.739 5.739 10 C 0.570 3.430 11 O -0.578 6.578 12 C -0.288 4.288 13 C -0.058 4.058 14 C -0.186 4.186 15 C 0.131 3.869 16 C -0.449 4.449 17 H 0.087 0.913 18 C 0.082 3.918 19 N -0.759 5.759 20 Si 0.907 3.093 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.259 1.259 24 C -0.241 4.241 25 C -0.019 4.019 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.396 0.604 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.288 0.712 47 H 0.098 0.902 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 14.769 -6.802 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.116 4.116 3 C -0.204 4.204 4 C -0.140 4.140 5 C -0.075 4.075 6 C -0.202 4.202 7 C -0.207 4.207 8 C 0.010 3.990 9 N -0.393 5.393 10 C 0.365 3.635 11 O -0.460 6.460 12 C -0.292 4.292 13 C -0.077 4.077 14 C -0.205 4.205 15 C 0.128 3.872 16 C -0.475 4.475 17 H 0.105 0.895 18 C -0.142 4.142 19 N -0.381 5.381 20 Si 0.730 3.270 21 H -0.186 1.186 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.260 4.260 25 C -0.039 4.039 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.233 0.767 44 H 0.105 0.895 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.116 0.884 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.510 15.096 -6.182 16.320 hybrid contribution -0.123 -0.837 -0.842 1.194 sum -0.632 14.259 -7.024 15.908 Atomic orbital electron populations 1.22452 0.95410 1.03403 1.01386 1.21161 0.95957 0.95752 0.98695 1.21864 1.00799 0.96307 1.01476 1.21691 1.01461 0.93082 0.97752 1.20793 0.96152 0.95290 0.95264 1.21959 0.98934 1.01587 0.97678 1.22288 0.95443 1.01739 1.01268 1.21191 1.01037 0.80774 0.95991 1.45962 1.72254 1.05558 1.15553 1.18575 0.75052 0.87041 0.82836 1.90626 1.50460 1.79248 1.25678 1.18869 1.23146 0.90179 0.97054 1.20409 0.97544 0.95381 0.94363 1.20750 1.08568 0.91875 0.99291 1.17720 0.86109 0.93259 0.90100 1.19776 1.21008 0.92623 1.14122 0.89531 1.26091 0.93015 0.99825 0.95229 1.69790 1.07447 1.38500 1.22336 0.86376 0.79861 0.81225 0.79549 1.18577 1.20062 1.18332 1.20687 1.14254 0.93923 0.97156 1.20367 0.94108 0.92940 0.96439 0.93436 0.90308 0.92929 0.90774 0.92833 0.92992 0.92867 0.91656 0.91757 0.92375 0.92252 0.92487 0.91997 0.91643 0.92422 0.92218 0.92236 0.76746 0.89523 0.87321 0.90032 0.88412 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 8.18 37.16 0.30 -1.03 16 2 C -0.10 -0.78 2.52 -90.62 -0.23 -1.01 16 3 C -0.15 -1.08 9.09 37.16 0.34 -0.74 16 4 C -0.10 -0.93 3.93 -26.73 -0.11 -1.03 16 5 C -0.07 -0.78 0.56 -154.51 -0.09 -0.87 16 6 C -0.14 -1.46 8.03 37.16 0.30 -1.16 16 7 C -0.15 -1.53 6.67 37.16 0.25 -1.28 16 8 C 0.13 1.90 4.56 -4.04 -0.02 1.89 16 9 N -0.74 -12.42 4.74 -61.31 -0.29 -12.71 16 10 C 0.57 12.32 7.76 -12.42 -0.10 12.22 16 11 O -0.58 -14.05 16.32 5.29 0.09 -13.97 16 12 C -0.29 -6.65 5.89 -104.73 -0.62 -7.26 16 13 C -0.06 -1.28 9.47 -39.61 -0.38 -1.66 16 14 C -0.19 -4.53 8.69 -39.27 -0.34 -4.87 16 15 C 0.13 3.35 5.55 -106.81 -0.59 2.76 16 16 C -0.45 -11.14 8.98 -37.75 -0.34 -11.48 16 17 H 0.09 2.06 7.98 -52.49 -0.42 1.64 16 18 C 0.08 1.90 4.88 -17.31 -0.08 1.82 16 19 N -0.76 -18.10 11.59 55.56 0.64 -17.45 16 20 Si 0.91 17.08 29.64 -169.99 -5.04 12.04 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 22 H -0.28 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 C -0.24 -5.88 9.73 -39.27 -0.38 -6.27 16 25 C -0.02 -0.46 9.52 -39.61 -0.38 -0.84 16 26 H 0.05 0.35 8.12 -51.93 -0.42 -0.08 16 27 H 0.08 0.62 4.01 -51.93 -0.21 0.42 16 28 H 0.05 0.42 7.93 -51.93 -0.41 0.01 16 29 H 0.07 0.60 5.93 -51.93 -0.31 0.29 16 30 H 0.05 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.61 7.84 -51.93 -0.41 0.20 16 34 H 0.06 0.58 7.98 -51.93 -0.41 0.17 16 35 H 0.06 0.64 6.86 -51.93 -0.36 0.28 16 36 H 0.06 0.52 6.24 -51.93 -0.32 0.19 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.61 6.93 -51.93 -0.36 0.25 16 39 H 0.06 0.58 6.11 -51.93 -0.32 0.26 16 40 H 0.06 0.67 6.56 -51.93 -0.34 0.33 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.40 6.03 4.23 -40.82 -0.17 5.86 16 44 H 0.09 1.63 6.37 -52.49 -0.33 1.29 16 45 H 0.11 2.66 6.51 -52.49 -0.34 2.32 16 46 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 47 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 48 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -27.86 370.05 -9.11 -36.96 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.63 Total: 10.36 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.45 Total: -20.82 kcal Atomic # 7 Polarization: -30.52 SS G_CDS: 0.35 Total: -30.16 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.04 Total: 12.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.86 -9.11 -36.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533990039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.018 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds