Wall clock time and date at job start Tue Mar 31 2020 08:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.52998 * 109.46863 * 120.00395 * 2 1 3 5 5 C 1.52999 * 109.47361 * 79.88081 * 4 2 1 6 6 C 1.53003 * 109.47069 * 64.90799 * 5 4 2 7 7 C 1.53000 * 109.46961 * 304.90640 * 5 4 2 8 8 C 1.53001 * 109.47263 * 184.90781 * 5 4 2 9 9 N 1.46496 * 109.47438 * 180.02562 * 8 5 4 10 10 C 1.34776 * 120.00233 * 179.97438 * 9 8 5 11 11 O 1.21584 * 119.99812 * 0.02562 * 10 9 8 12 12 C 1.47643 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.40012 * 119.89337 * 0.25218 * 12 10 9 14 14 C 1.36322 * 120.10149 * 180.25426 * 13 12 10 15 15 C 1.40885 * 119.89407 * 359.47185 * 14 13 12 16 16 C 1.41104 * 120.10668 * 180.29765 * 15 14 13 17 17 H 1.07995 * 120.00065 * 155.59932 * 16 15 14 18 18 C 1.40227 * 119.99874 * 335.60450 * 16 15 14 19 19 N 1.30644 * 119.99966 * 332.32009 * 18 16 15 20 20 Si 1.86797 * 120.00184 * 152.32553 * 18 16 15 21 21 H 1.48499 * 109.47560 * 59.99462 * 20 18 16 22 22 H 1.48505 * 109.47363 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46871 * 299.99676 * 20 18 16 24 24 C 1.40888 * 119.79144 * 0.27968 * 15 14 13 25 25 C 1.36323 * 119.89384 * 359.97438 * 24 15 14 26 26 H 1.09002 * 109.47195 * 50.73590 * 1 2 3 27 27 H 1.08998 * 109.47182 * 170.73437 * 1 2 3 28 28 H 1.08998 * 109.46899 * 290.73472 * 1 2 3 29 29 H 1.09000 * 109.46590 * 240.00224 * 2 1 3 30 30 H 1.08998 * 109.47232 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47191 * 300.00716 * 3 2 1 32 32 H 1.09004 * 109.46771 * 60.00200 * 3 2 1 33 33 H 1.09000 * 109.47400 * 319.87697 * 4 2 1 34 34 H 1.09005 * 109.46797 * 199.87886 * 4 2 1 35 35 H 1.09001 * 109.46963 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.46923 * 300.00101 * 6 5 4 37 37 H 1.09001 * 109.47293 * 60.00013 * 6 5 4 38 38 H 1.08994 * 109.47049 * 316.31420 * 7 5 4 39 39 H 1.09005 * 109.46861 * 76.31401 * 7 5 4 40 40 H 1.09000 * 109.46856 * 196.30862 * 7 5 4 41 41 H 1.09002 * 109.47058 * 59.99797 * 8 5 4 42 42 H 1.09006 * 109.47316 * 300.00256 * 8 5 4 43 43 H 0.97001 * 119.99504 * 359.97438 * 9 8 5 44 44 H 1.07998 * 119.94774 * 0.02966 * 13 12 10 45 45 H 1.07996 * 120.05279 * 179.74807 * 14 13 12 46 46 H 0.97002 * 120.00465 * 180.02562 * 19 18 16 47 47 H 1.07997 * 120.05638 * 180.02562 * 24 15 14 48 48 H 1.08000 * 119.94555 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.9710 -2.2338 1.0287 6 6 2.9346 -2.6303 -0.0917 7 6 0.5451 -2.6277 0.6383 8 6 2.3645 -2.9558 2.3190 9 7 2.2991 -4.4040 2.1077 10 6 2.6063 -5.2464 3.1139 11 8 2.9372 -4.8044 4.1971 12 6 2.5398 -6.7059 2.9011 13 6 2.1624 -7.2124 1.6515 14 6 2.0946 -8.5592 1.4519 15 6 2.4157 -9.4418 2.5020 16 6 2.3531 -10.8366 2.2984 17 1 2.9449 -11.4991 2.9126 18 6 1.5225 -11.3626 1.2985 19 7 0.4494 -10.7137 0.9324 20 14 1.9503 -12.9913 0.4900 21 1 1.9921 -14.0597 1.5205 22 1 0.9206 -13.3249 -0.5268 23 1 3.2782 -12.8844 -0.1662 24 6 2.7999 -8.9273 3.7560 25 6 2.8598 -7.5789 3.9478 26 1 -0.3634 0.6504 -0.7957 27 1 -0.3633 -1.0142 -0.1655 28 1 -0.3633 0.3638 0.9611 29 1 1.8933 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.4202 -0.4501 2.1039 34 1 3.0723 -0.4289 1.4416 35 1 2.8858 -3.7079 -0.2485 36 1 2.6543 -2.1159 -1.0109 37 1 3.9505 -2.3496 0.1864 38 1 -0.1648 -2.1023 1.2770 39 1 0.3658 -2.3584 -0.4026 40 1 0.4185 -3.7033 0.7623 41 1 1.6780 -2.6733 3.1172 42 1 3.3804 -2.6751 2.5972 43 1 2.0346 -4.7565 1.2436 44 1 1.9212 -6.5350 0.8457 45 1 1.7995 -8.9490 0.4889 46 1 -0.1254 -11.0776 0.2410 47 1 3.0474 -9.5999 4.5639 48 1 3.1546 -7.1836 4.9086 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533990039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:51 Heat of formation + Delta-G solvation = -60.705339 kcal Electronic energy + Delta-G solvation = -24601.678792 eV Core-core repulsion = 21233.497405 eV Total energy + Delta-G solvation = -3368.181388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.03201 -39.73577 -38.73963 -36.02575 -35.69064 -33.61036 -31.92277 -31.33159 -29.27848 -28.34507 -27.75924 -27.09838 -26.37559 -23.60724 -22.79801 -21.37839 -21.07334 -19.79719 -19.36353 -18.43209 -17.29950 -16.83001 -16.49647 -16.08332 -15.77808 -15.68868 -15.34702 -15.05144 -14.77632 -14.51897 -14.33728 -14.22143 -13.96691 -13.85424 -13.68730 -13.31511 -13.13844 -12.91232 -12.90216 -12.76391 -12.64311 -12.46603 -12.41038 -12.33343 -11.82688 -11.73303 -11.66290 -11.44318 -11.37138 -11.15729 -11.05366 -10.98199 -10.65509 -10.02985 -9.58256 -9.45315 -8.88074 -6.46189 0.46098 1.13958 1.37494 1.44156 1.52456 2.11538 2.17524 2.43868 2.74770 3.63826 3.67033 3.83612 3.86012 4.17715 4.20912 4.25823 4.29347 4.33936 4.43211 4.55748 4.64101 4.71366 4.80966 4.85093 4.87024 4.89897 4.92228 4.97580 5.02292 5.02529 5.11906 5.13278 5.14657 5.17448 5.23581 5.28077 5.34352 5.44018 5.48158 5.56503 5.57821 5.63424 5.65575 5.81275 5.91649 5.98655 6.21529 6.51025 6.72611 6.74943 6.88494 7.46566 8.09636 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.002785 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.464985 B =10050.595234 C =10870.564785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.099 4.099 5 C -0.064 4.064 6 C -0.145 4.145 7 C -0.150 4.150 8 C 0.132 3.868 9 N -0.720 5.720 10 C 0.569 3.431 11 O -0.610 6.610 12 C -0.299 4.299 13 C -0.048 4.048 14 C -0.204 4.204 15 C 0.104 3.896 16 C -0.478 4.478 17 H 0.087 0.913 18 C 0.047 3.953 19 N -0.785 5.785 20 Si 0.982 3.018 21 H -0.257 1.257 22 H -0.262 1.262 23 H -0.258 1.258 24 C -0.256 4.256 25 C -0.031 4.031 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.406 0.594 44 H 0.121 0.879 45 H 0.105 0.895 46 H 0.300 0.700 47 H 0.103 0.897 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.896 15.359 -8.923 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.137 4.137 5 C -0.064 4.064 6 C -0.202 4.202 7 C -0.207 4.207 8 C 0.008 3.992 9 N -0.372 5.372 10 C 0.362 3.638 11 O -0.495 6.495 12 C -0.304 4.304 13 C -0.067 4.067 14 C -0.223 4.223 15 C 0.101 3.899 16 C -0.504 4.504 17 H 0.105 0.895 18 C -0.175 4.175 19 N -0.407 5.407 20 Si 0.801 3.199 21 H -0.181 1.181 22 H -0.186 1.186 23 H -0.182 1.182 24 C -0.276 4.276 25 C -0.050 4.050 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.244 0.756 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.111 0.889 47 H 0.121 0.879 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.914 15.718 -8.328 17.812 hybrid contribution -0.034 -0.933 -0.152 0.946 sum -0.948 14.785 -8.481 17.071 Atomic orbital electron populations 1.22444 0.95211 1.03503 1.01491 1.21134 0.96063 0.96038 0.97954 1.21855 1.00912 0.95839 1.01786 1.21669 1.01631 0.91912 0.98450 1.20727 0.96549 0.95789 0.93365 1.21974 0.98709 1.01239 0.98250 1.22314 0.95055 1.00726 1.02567 1.21386 1.00565 0.79175 0.98042 1.45814 1.70255 1.06419 1.14755 1.18431 0.75169 0.86940 0.83244 1.90604 1.52144 1.79607 1.27126 1.19141 1.22809 0.91229 0.97176 1.20647 0.95941 0.95199 0.94898 1.20801 1.09854 0.92715 0.98968 1.18069 0.86893 0.94197 0.90722 1.20047 1.21976 0.92646 1.15720 0.89532 1.26910 0.92234 1.03438 0.94931 1.69792 1.08042 1.40250 1.22661 0.85253 0.79656 0.76402 0.78584 1.18139 1.18626 1.18244 1.20823 1.15031 0.94352 0.97363 1.20507 0.94414 0.93090 0.96969 0.92769 0.90359 0.93262 0.90368 0.92690 0.92287 0.92998 0.91949 0.91667 0.93231 0.90274 0.92672 0.91769 0.89754 0.93910 0.93094 0.92909 0.75610 0.86101 0.87703 0.88871 0.87903 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 8.18 71.98 0.59 -1.67 16 2 C -0.09 -1.26 2.52 -10.79 -0.03 -1.29 16 3 C -0.15 -1.82 9.09 71.98 0.65 -1.17 16 4 C -0.10 -1.61 3.93 30.59 0.12 -1.49 16 5 C -0.06 -1.23 0.56 -52.18 -0.03 -1.26 16 6 C -0.14 -2.60 8.03 71.98 0.58 -2.02 16 7 C -0.15 -2.74 6.67 71.98 0.48 -2.26 16 8 C 0.13 3.63 4.56 86.38 0.39 4.03 16 9 N -0.72 -23.60 4.74 -466.16 -2.21 -25.80 16 10 C 0.57 24.56 7.76 86.73 0.67 25.23 16 11 O -0.61 -30.00 16.32 -3.98 -0.06 -30.07 16 12 C -0.30 -13.90 5.89 -19.93 -0.12 -14.01 16 13 C -0.05 -2.11 9.47 22.25 0.21 -1.90 16 14 C -0.20 -10.05 8.69 22.47 0.20 -9.85 16 15 C 0.10 5.44 5.55 -21.28 -0.12 5.32 16 16 C -0.48 -24.08 8.98 23.46 0.21 -23.87 16 17 H 0.09 4.20 7.98 -2.91 -0.02 4.18 16 18 C 0.05 2.14 4.88 85.35 0.42 2.56 16 19 N -0.79 -37.20 11.59 21.87 0.25 -36.94 16 20 Si 0.98 34.23 29.64 68.60 2.03 36.27 16 21 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 22 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 24 C -0.26 -12.92 9.73 22.47 0.22 -12.70 16 25 C -0.03 -1.50 9.52 22.25 0.21 -1.29 16 26 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 27 H 0.08 1.04 4.01 -2.39 -0.01 1.03 16 28 H 0.05 0.69 7.93 -2.39 -0.02 0.67 16 29 H 0.08 1.02 5.93 -2.39 -0.01 1.00 16 30 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.06 1.07 7.84 -2.39 -0.02 1.05 16 34 H 0.06 1.07 7.98 -2.38 -0.02 1.05 16 35 H 0.05 0.98 6.86 -2.39 -0.02 0.96 16 36 H 0.08 1.13 6.24 -2.39 -0.01 1.11 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.15 6.93 -2.39 -0.02 1.13 16 39 H 0.08 1.24 6.11 -2.38 -0.01 1.23 16 40 H 0.04 0.91 6.56 -2.39 -0.02 0.90 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.41 11.74 4.23 -92.71 -0.39 11.34 16 44 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 45 H 0.10 5.16 6.51 -2.91 -0.02 5.14 16 46 H 0.30 12.54 8.29 -92.71 -0.77 11.77 16 47 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 48 H 0.10 4.83 7.63 -2.91 -0.02 4.81 16 Total: -1.00 -60.35 370.05 5.23 -55.12 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.56 Total: 39.07 kcal Atomic # 6 Polarization: -42.30 SS G_CDS: 4.66 Total: -37.64 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -1.95 Total: -62.75 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.06 Total: -30.07 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.27 kcal Total: -60.35 5.23 -55.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533990039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.588 kcal (2) G-P(sol) polarization free energy of solvation -60.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds