Wall clock time and date at job start Tue Mar 31 2020 09:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46980 * 2 1 4 4 C 1.52997 * 109.46951 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47093 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47425 * 305.00454 * 5 4 3 7 7 C 1.52994 * 109.47240 * 184.99798 * 5 4 3 8 8 C 1.53001 * 109.47160 * 175.00091 * 7 5 4 9 9 C 1.53006 * 109.47065 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.46879 * 64.99921 * 5 4 3 11 11 C 1.34776 * 120.00191 * 204.99553 * 10 5 4 12 12 O 1.21582 * 120.00138 * 0.02562 * 11 10 5 13 13 C 1.47644 * 120.00302 * 180.02562 * 11 10 5 14 14 C 1.40010 * 119.89525 * 180.02562 * 13 11 10 15 15 C 1.36318 * 120.10475 * 180.25163 * 14 13 11 16 16 C 1.40896 * 119.89127 * 359.52661 * 15 14 13 17 17 C 1.41105 * 120.10198 * 180.22988 * 16 15 14 18 18 H 1.08001 * 120.00056 * 204.79556 * 17 16 15 19 19 C 1.40223 * 120.00499 * 24.78776 * 17 16 15 20 20 N 1.30654 * 119.99604 * 17.72846 * 19 17 16 21 21 Si 1.86796 * 120.00554 * 197.72576 * 19 17 16 22 22 H 1.48504 * 109.47116 * 89.99790 * 21 19 17 23 23 H 1.48499 * 109.47678 * 210.00303 * 21 19 17 24 24 H 1.48502 * 109.47123 * 330.00406 * 21 19 17 25 25 C 1.40884 * 119.79293 * 0.49186 * 16 15 14 26 26 C 1.36316 * 119.88998 * 359.73808 * 25 16 15 27 27 H 1.08989 * 109.47056 * 59.99762 * 1 2 3 28 28 H 1.09003 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46913 * 299.99599 * 1 2 3 30 30 H 1.08999 * 109.47004 * 239.99927 * 2 1 3 31 31 H 1.08999 * 109.46879 * 120.00221 * 2 1 3 32 32 H 1.08998 * 109.46405 * 60.00034 * 3 2 1 33 33 H 1.09002 * 109.46772 * 299.99957 * 3 2 1 34 34 H 1.08999 * 109.47034 * 59.99927 * 4 3 2 35 35 H 1.09002 * 109.47373 * 300.00151 * 4 3 2 36 36 H 1.08996 * 109.47708 * 295.00412 * 7 5 4 37 37 H 1.09008 * 109.46858 * 55.00430 * 7 5 4 38 38 H 1.09001 * 109.47488 * 300.00122 * 8 7 5 39 39 H 1.08994 * 109.47072 * 60.00167 * 8 7 5 40 40 H 1.08994 * 109.47437 * 59.99903 * 9 8 7 41 41 H 1.08999 * 109.46905 * 180.02562 * 9 8 7 42 42 H 1.09001 * 109.46602 * 299.99583 * 9 8 7 43 43 H 0.97003 * 120.00227 * 25.00269 * 10 5 4 44 44 H 1.07997 * 119.94878 * 359.97438 * 14 13 11 45 45 H 1.08000 * 120.05610 * 179.71795 * 15 14 13 46 46 H 0.97000 * 119.99671 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.05779 * 179.70908 * 25 16 15 48 48 H 1.08006 * 119.94731 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6450 3.4239 -0.8430 7 6 5.6047 2.8868 -0.1276 8 6 6.1043 4.3275 -0.2536 9 6 7.6291 4.3292 -0.3806 10 7 3.6929 3.5403 1.2505 11 6 3.5662 4.8813 1.2980 12 8 3.7726 5.5471 0.3019 13 6 3.1766 5.5418 2.5597 14 6 3.0451 6.9349 2.6064 15 6 2.6906 7.5496 3.7703 16 6 2.4468 6.7798 4.9250 17 6 2.0749 7.4111 6.1309 18 1 2.2704 6.9271 7.0764 19 6 1.4517 8.6668 6.1018 20 7 0.9045 9.0991 4.9969 21 14 1.4036 9.7217 7.6427 22 1 2.6042 10.5949 7.6825 23 1 0.1799 10.5630 7.6288 24 1 1.3886 8.8460 8.8419 25 6 2.5809 5.3783 4.8731 26 6 2.9403 4.7730 3.7058 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9338 0.9286 0.8891 36 1 6.0433 2.4263 0.7576 37 1 5.8966 2.3223 -1.0132 38 1 5.6659 4.7880 -1.1389 39 1 5.8125 4.8920 0.6319 40 1 7.9206 3.7648 -1.2663 41 1 7.9850 5.3556 -0.4699 42 1 8.0678 3.8687 0.5046 43 1 3.5279 3.0091 2.0452 44 1 3.2291 7.5238 1.7200 45 1 2.5938 8.6246 3.8066 46 1 0.4730 9.9676 4.9769 47 1 2.3996 4.7845 5.7568 48 1 3.0438 3.6987 3.6651 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534655469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:39 Heat of formation + Delta-G solvation = -65.584606 kcal Electronic energy + Delta-G solvation = -24672.880261 eV Core-core repulsion = 21304.487292 eV Total energy + Delta-G solvation = -3368.392968 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.51745 -37.50219 -36.39128 -34.82025 -33.87715 -33.11711 -31.00880 -29.94730 -29.32758 -27.92003 -25.83658 -24.42754 -22.23856 -21.57337 -21.12706 -20.65160 -20.26244 -19.61604 -17.51569 -16.73287 -16.21909 -15.38609 -15.30357 -14.94860 -14.30305 -14.05239 -13.86910 -13.74635 -13.49223 -13.18858 -13.03338 -12.90779 -12.65555 -12.47690 -12.20585 -12.02359 -11.77326 -11.62657 -11.48038 -11.36746 -11.26371 -11.15495 -11.01117 -10.93075 -10.84931 -10.62985 -10.59235 -10.30573 -10.16879 -10.01269 -9.51790 -9.32283 -8.87533 -8.45168 -7.67860 -7.54183 -7.00142 -4.58426 2.27203 2.92958 2.97046 2.99366 3.05129 3.75709 3.86510 3.92181 4.54372 4.60130 4.86703 4.95552 5.10460 5.21804 5.26549 5.31425 5.44688 5.54832 5.59891 5.64655 5.68526 5.73884 5.79115 5.83989 5.91790 5.93726 6.00513 6.01074 6.06687 6.13714 6.17636 6.29172 6.31928 6.33997 6.35784 6.56396 6.78566 6.82404 6.86013 7.06469 7.09738 7.15210 7.45774 7.64124 7.81884 7.90273 8.07678 8.32031 8.45400 8.65115 8.77703 9.15971 9.91848 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003394 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.100123 B = 8246.911347 C = 9640.820690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.125 4.125 5 C 0.146 3.854 6 H 0.083 0.917 7 C -0.127 4.127 8 C -0.120 4.120 9 C -0.151 4.151 10 N -0.735 5.735 11 C 0.572 3.428 12 O -0.568 6.568 13 C -0.282 4.282 14 C -0.036 4.036 15 C -0.183 4.183 16 C 0.128 3.872 17 C -0.445 4.445 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.770 5.770 21 Si 0.913 3.087 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.260 1.260 25 C -0.236 4.236 26 C -0.050 4.050 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.394 0.606 44 H 0.099 0.901 45 H 0.120 0.880 46 H 0.287 0.713 47 H 0.096 0.904 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.522 -12.341 -6.222 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.163 4.163 5 C 0.041 3.959 6 H 0.101 0.899 7 C -0.166 4.166 8 C -0.157 4.157 9 C -0.208 4.208 10 N -0.388 5.388 11 C 0.367 3.633 12 O -0.449 6.449 13 C -0.287 4.287 14 C -0.056 4.056 15 C -0.202 4.202 16 C 0.125 3.875 17 C -0.473 4.473 18 H 0.102 0.898 19 C -0.147 4.147 20 N -0.393 5.393 21 Si 0.737 3.263 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.255 4.255 26 C -0.069 4.069 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.229 0.771 44 H 0.118 0.882 45 H 0.138 0.862 46 H 0.098 0.902 47 H 0.114 0.886 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.513 -11.680 -7.044 14.085 hybrid contribution -0.227 0.194 1.061 1.102 sum 3.286 -11.486 -5.983 13.361 Atomic orbital electron populations 1.21782 0.95997 1.01275 1.02072 1.21530 0.95853 0.97044 1.01629 1.21630 0.94981 0.96434 1.02859 1.21881 0.96002 0.95936 1.02482 1.20897 0.93985 0.92373 0.88638 0.89889 1.22032 0.95536 0.97755 1.01237 1.21585 0.94196 0.96243 1.03681 1.21804 0.97110 1.01150 1.00730 1.45976 1.72792 1.07521 1.12487 1.18500 0.75151 0.80942 0.88751 1.90641 1.52828 1.64357 1.37097 1.18959 1.22626 0.94298 0.92792 1.20478 0.95313 0.92704 0.97085 1.21016 1.06321 0.99941 0.92909 1.17774 0.85907 0.90847 0.92965 1.19833 1.32050 1.01062 0.94339 0.89805 1.26096 0.92768 0.97877 0.97993 1.69755 1.22583 1.18730 1.28246 0.86218 0.78788 0.79779 0.81520 1.18935 1.20025 1.18332 1.20661 1.13189 0.94660 0.97010 1.20357 0.96972 0.96445 0.93113 0.92817 0.93051 0.92547 0.92355 0.92179 0.91386 0.91993 0.90971 0.91653 0.92269 0.92006 0.91745 0.90898 0.93509 0.93086 0.93343 0.77145 0.88244 0.86246 0.90206 0.88614 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.12 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.12 -1.30 5.10 -26.73 -0.14 -1.44 16 4 C -0.13 -1.28 4.75 -26.73 -0.13 -1.41 16 5 C 0.15 1.95 2.26 -67.94 -0.15 1.80 16 6 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 7 C -0.13 -1.61 4.89 -26.73 -0.13 -1.74 16 8 C -0.12 -1.81 4.54 -26.73 -0.12 -1.93 16 9 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 10 N -0.73 -11.56 4.43 -54.82 -0.24 -11.80 16 11 C 0.57 11.64 6.33 -12.42 -0.08 11.56 16 12 O -0.57 -12.85 13.46 5.29 0.07 -12.78 16 13 C -0.28 -6.34 5.89 -104.73 -0.62 -6.96 16 14 C -0.04 -0.89 9.52 -39.61 -0.38 -1.27 16 15 C -0.18 -4.67 8.63 -39.27 -0.34 -5.01 16 16 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16 17 C -0.45 -11.11 9.04 -37.75 -0.34 -11.45 16 18 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 19 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 20 N -0.77 -18.92 10.95 55.56 0.61 -18.31 16 21 Si 0.91 17.48 29.60 -169.99 -5.03 12.45 16 22 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 25 C -0.24 -5.44 9.73 -39.27 -0.38 -5.82 16 26 C -0.05 -1.05 9.47 -39.61 -0.38 -1.42 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.83 7.75 -51.93 -0.40 0.43 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 39 H 0.07 1.34 5.64 -51.93 -0.29 1.05 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.39 5.58 6.60 -40.82 -0.27 5.31 16 44 H 0.10 2.40 7.63 -52.49 -0.40 2.00 16 45 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 46 H 0.29 6.35 8.29 -40.82 -0.34 6.02 16 47 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 48 H 0.09 1.52 6.37 -52.48 -0.33 1.19 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -27.15 382.08 -10.41 -37.57 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.29 Total: 11.71 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -3.29 Total: -24.60 kcal Atomic # 7 Polarization: -30.48 SS G_CDS: 0.37 Total: -30.11 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.78 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.15 -10.41 -37.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534655469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds