Wall clock time and date at job start Tue Mar 31 2020 09:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46980 * 2 1 4 4 C 1.52997 * 109.46951 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47093 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47425 * 305.00454 * 5 4 3 7 7 C 1.52994 * 109.47240 * 184.99798 * 5 4 3 8 8 C 1.53001 * 109.47160 * 175.00091 * 7 5 4 9 9 C 1.53006 * 109.47065 * 180.02562 * 8 7 5 10 10 N 1.46499 * 109.46879 * 64.99921 * 5 4 3 11 11 C 1.34776 * 120.00191 * 204.99553 * 10 5 4 12 12 O 1.21582 * 120.00138 * 0.02562 * 11 10 5 13 13 C 1.47644 * 120.00302 * 180.02562 * 11 10 5 14 14 C 1.40010 * 119.89525 * 180.02562 * 13 11 10 15 15 C 1.36318 * 120.10475 * 180.25163 * 14 13 11 16 16 C 1.40896 * 119.89127 * 359.52661 * 15 14 13 17 17 C 1.41105 * 120.10198 * 180.22988 * 16 15 14 18 18 H 1.08001 * 120.00056 * 204.79556 * 17 16 15 19 19 C 1.40223 * 120.00499 * 24.78776 * 17 16 15 20 20 N 1.30654 * 119.99604 * 17.72846 * 19 17 16 21 21 Si 1.86796 * 120.00554 * 197.72576 * 19 17 16 22 22 H 1.48504 * 109.47116 * 89.99790 * 21 19 17 23 23 H 1.48499 * 109.47678 * 210.00303 * 21 19 17 24 24 H 1.48502 * 109.47123 * 330.00406 * 21 19 17 25 25 C 1.40884 * 119.79293 * 0.49186 * 16 15 14 26 26 C 1.36316 * 119.88998 * 359.73808 * 25 16 15 27 27 H 1.08989 * 109.47056 * 59.99762 * 1 2 3 28 28 H 1.09003 * 109.46780 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46913 * 299.99599 * 1 2 3 30 30 H 1.08999 * 109.47004 * 239.99927 * 2 1 3 31 31 H 1.08999 * 109.46879 * 120.00221 * 2 1 3 32 32 H 1.08998 * 109.46405 * 60.00034 * 3 2 1 33 33 H 1.09002 * 109.46772 * 299.99957 * 3 2 1 34 34 H 1.08999 * 109.47034 * 59.99927 * 4 3 2 35 35 H 1.09002 * 109.47373 * 300.00151 * 4 3 2 36 36 H 1.08996 * 109.47708 * 295.00412 * 7 5 4 37 37 H 1.09008 * 109.46858 * 55.00430 * 7 5 4 38 38 H 1.09001 * 109.47488 * 300.00122 * 8 7 5 39 39 H 1.08994 * 109.47072 * 60.00167 * 8 7 5 40 40 H 1.08994 * 109.47437 * 59.99903 * 9 8 7 41 41 H 1.08999 * 109.46905 * 180.02562 * 9 8 7 42 42 H 1.09001 * 109.46602 * 299.99583 * 9 8 7 43 43 H 0.97003 * 120.00227 * 25.00269 * 10 5 4 44 44 H 1.07997 * 119.94878 * 359.97438 * 14 13 11 45 45 H 1.08000 * 120.05610 * 179.71795 * 15 14 13 46 46 H 0.97000 * 119.99671 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.05779 * 179.70908 * 25 16 15 48 48 H 1.08006 * 119.94731 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 -0.0013 6 1 3.6450 3.4239 -0.8430 7 6 5.6047 2.8868 -0.1276 8 6 6.1043 4.3275 -0.2536 9 6 7.6291 4.3292 -0.3806 10 7 3.6929 3.5403 1.2505 11 6 3.5662 4.8813 1.2980 12 8 3.7726 5.5471 0.3019 13 6 3.1766 5.5418 2.5597 14 6 3.0451 6.9349 2.6064 15 6 2.6906 7.5496 3.7703 16 6 2.4468 6.7798 4.9250 17 6 2.0749 7.4111 6.1309 18 1 2.2704 6.9271 7.0764 19 6 1.4517 8.6668 6.1018 20 7 0.9045 9.0991 4.9969 21 14 1.4036 9.7217 7.6427 22 1 2.6042 10.5949 7.6825 23 1 0.1799 10.5630 7.6288 24 1 1.3886 8.8460 8.8419 25 6 2.5809 5.3783 4.8731 26 6 2.9403 4.7730 3.7058 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8908 35 1 3.9338 0.9286 0.8891 36 1 6.0433 2.4263 0.7576 37 1 5.8966 2.3223 -1.0132 38 1 5.6659 4.7880 -1.1389 39 1 5.8125 4.8920 0.6319 40 1 7.9206 3.7648 -1.2663 41 1 7.9850 5.3556 -0.4699 42 1 8.0678 3.8687 0.5046 43 1 3.5279 3.0091 2.0452 44 1 3.2291 7.5238 1.7200 45 1 2.5938 8.6246 3.8066 46 1 0.4730 9.9676 4.9769 47 1 2.3996 4.7845 5.7568 48 1 3.0438 3.6987 3.6651 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534655469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:38 Heat of formation + Delta-G solvation = -77.593474 kcal Electronic energy + Delta-G solvation = -24673.401004 eV Core-core repulsion = 21304.487292 eV Total energy + Delta-G solvation = -3368.913712 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02193 -39.16044 -37.71567 -35.81180 -35.65222 -34.38691 -32.32884 -31.69935 -30.96593 -28.93786 -27.58972 -25.39441 -23.86481 -22.88886 -22.46892 -21.67599 -21.50032 -21.22346 -19.34684 -18.34779 -17.45509 -17.07605 -16.37972 -16.13794 -15.74318 -15.61780 -15.24309 -14.99515 -14.81326 -14.47092 -14.31841 -14.14888 -13.98693 -13.82876 -13.60621 -13.42951 -13.18720 -12.91980 -12.80649 -12.63114 -12.57332 -12.37022 -12.35740 -12.01950 -11.90699 -11.83718 -11.73664 -11.46682 -11.37295 -11.34473 -11.18696 -11.12275 -10.54836 -9.84788 -9.55496 -9.38319 -8.78189 -6.47439 0.48701 1.15901 1.37459 1.43432 1.52581 2.14246 2.21693 2.51145 2.83027 3.62201 3.71400 4.05756 4.06770 4.17101 4.23725 4.29223 4.33319 4.36774 4.42032 4.45331 4.53406 4.64329 4.72508 4.83389 4.87924 4.93111 4.97513 4.98896 5.02504 5.03696 5.11255 5.13706 5.20462 5.23087 5.27502 5.28886 5.34755 5.39615 5.44526 5.54160 5.57536 5.59826 5.79840 5.80804 5.99093 6.03382 6.21716 6.57218 6.77877 6.83488 6.91806 7.58858 8.17005 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003394 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.100123 B = 8246.911347 C = 9640.820690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.114 4.114 5 C 0.143 3.857 6 H 0.058 0.942 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.146 4.146 10 N -0.715 5.715 11 C 0.573 3.427 12 O -0.596 6.596 13 C -0.290 4.290 14 C -0.051 4.051 15 C -0.203 4.203 16 C 0.101 3.899 17 C -0.475 4.475 18 H 0.091 0.909 19 C 0.034 3.966 20 N -0.806 5.806 21 Si 0.989 3.011 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.251 1.251 25 C -0.247 4.247 26 C -0.039 4.039 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.034 0.966 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.056 0.944 43 H 0.404 0.596 44 H 0.089 0.911 45 H 0.102 0.898 46 H 0.294 0.706 47 H 0.114 0.886 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 -15.248 -5.701 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.160 4.160 4 C -0.151 4.151 5 C 0.039 3.961 6 H 0.076 0.924 7 C -0.159 4.159 8 C -0.157 4.157 9 C -0.203 4.203 10 N -0.368 5.368 11 C 0.366 3.634 12 O -0.480 6.480 13 C -0.295 4.295 14 C -0.071 4.071 15 C -0.223 4.223 16 C 0.097 3.903 17 C -0.503 4.503 18 H 0.109 0.891 19 C -0.185 4.185 20 N -0.429 5.429 21 Si 0.808 3.192 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.174 1.174 25 C -0.266 4.266 26 C -0.057 4.057 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.241 0.759 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.105 0.895 47 H 0.132 0.868 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.289 -14.639 -6.529 16.593 hybrid contribution -0.458 1.038 0.767 1.370 sum 3.831 -13.601 -5.762 15.259 Atomic orbital electron populations 1.21807 0.96350 1.01891 1.01362 1.21496 0.95545 0.95796 1.02703 1.21615 0.95552 0.97433 1.01361 1.21837 0.95312 0.93498 1.04498 1.21103 0.94797 0.93863 0.86329 0.92353 1.22002 0.94492 0.96222 1.03162 1.21509 0.96013 0.97432 1.00749 1.21758 0.95093 1.01255 1.02177 1.45811 1.71084 1.05856 1.14011 1.18239 0.75193 0.82464 0.87518 1.90630 1.54115 1.65487 1.37776 1.19283 1.21837 0.93787 0.94559 1.20540 0.96008 0.94108 0.96420 1.20930 1.08139 0.99304 0.93891 1.18129 0.86698 0.92272 0.93159 1.20139 1.33179 1.02513 0.94446 0.89097 1.27011 0.91653 0.98586 1.01229 1.69812 1.23183 1.19490 1.30448 0.85094 0.78899 0.77804 0.77358 1.18712 1.19166 1.17405 1.20935 1.13246 0.93940 0.98470 1.20688 0.94913 0.98512 0.91615 0.93276 0.91778 0.93580 0.91038 0.91242 0.93214 0.93312 0.88612 0.89835 0.90962 0.89162 0.94008 0.94740 0.91305 0.93885 0.92446 0.75878 0.89311 0.88048 0.89469 0.86762 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.12 -1.80 5.93 30.60 0.18 -1.62 16 3 C -0.12 -2.36 5.10 30.59 0.16 -2.20 16 4 C -0.11 -1.93 4.75 30.59 0.15 -1.78 16 5 C 0.14 3.56 2.26 44.99 0.10 3.66 16 6 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 7 C -0.12 -2.73 4.89 30.59 0.15 -2.58 16 8 C -0.12 -3.56 4.54 30.60 0.14 -3.42 16 9 C -0.15 -3.47 9.91 71.98 0.71 -2.76 16 10 N -0.72 -21.54 4.43 -445.61 -1.97 -23.51 16 11 C 0.57 23.55 6.33 86.73 0.55 24.10 16 12 O -0.60 -28.00 13.46 -3.97 -0.05 -28.05 16 13 C -0.29 -13.25 5.89 -19.93 -0.12 -13.37 16 14 C -0.05 -2.64 9.52 22.25 0.21 -2.43 16 15 C -0.20 -10.97 8.63 22.47 0.19 -10.78 16 16 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 17 C -0.48 -24.21 9.04 23.46 0.21 -24.00 16 18 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 19 C 0.03 1.61 5.14 85.35 0.44 2.05 16 20 N -0.81 -40.98 10.95 21.87 0.24 -40.74 16 21 Si 0.99 35.91 29.60 68.60 2.03 37.94 16 22 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 23 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 24 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 25 C -0.25 -11.32 9.73 22.47 0.22 -11.10 16 26 C -0.04 -1.59 9.47 22.25 0.21 -1.38 16 27 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.04 1.40 7.84 -2.39 -0.02 1.38 16 39 H 0.03 1.28 5.64 -2.39 -0.01 1.27 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.40 10.37 6.60 -92.71 -0.61 9.76 16 44 H 0.09 4.61 7.63 -2.91 -0.02 4.59 16 45 H 0.10 5.71 6.16 -2.91 -0.02 5.69 16 46 H 0.29 13.45 8.29 -92.71 -0.77 12.68 16 47 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 48 H 0.13 4.16 6.37 -2.91 -0.02 4.14 16 Total: -1.00 -62.66 382.08 4.65 -58.01 By element: Atomic # 1 Polarization: 40.34 SS G_CDS: 0.31 Total: 40.66 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 4.10 Total: -44.31 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -1.74 Total: -64.25 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -0.05 Total: -28.05 kcal Atomic # 14 Polarization: 35.91 SS G_CDS: 2.03 Total: 37.94 kcal Total: -62.66 4.65 -58.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534655469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.584 kcal (2) G-P(sol) polarization free energy of solvation -62.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds