Wall clock time and date at job start Tue Mar 31 2020 09:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47549 * 2 1 4 4 C 1.52992 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47222 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46911 * 54.99911 * 5 4 3 7 7 C 1.53001 * 109.47472 * 174.99974 * 5 4 3 8 8 C 1.52994 * 109.47204 * 185.00074 * 7 5 4 9 9 C 1.53001 * 109.47204 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.47133 * 295.00132 * 5 4 3 11 11 C 1.34781 * 120.00131 * 154.99456 * 10 5 4 12 12 O 1.21587 * 120.00059 * 0.02562 * 11 10 5 13 13 C 1.47639 * 120.00049 * 179.97438 * 11 10 5 14 14 C 1.40019 * 119.89494 * 359.73324 * 13 11 10 15 15 C 1.36322 * 120.10648 * 179.71333 * 14 13 11 16 16 C 1.40890 * 119.88764 * 0.57897 * 15 14 13 17 17 C 1.41111 * 120.10211 * 179.67336 * 16 15 14 18 18 H 1.08000 * 120.00284 * 204.65191 * 17 16 15 19 19 C 1.40232 * 119.99897 * 24.65297 * 17 16 15 20 20 N 1.30649 * 120.00020 * 17.86108 * 19 17 16 21 21 Si 1.86799 * 119.99954 * 197.86663 * 19 17 16 22 22 H 1.48495 * 109.47124 * 89.99825 * 21 19 17 23 23 H 1.48500 * 109.46920 * 209.99684 * 21 19 17 24 24 H 1.48503 * 109.46859 * 329.99464 * 21 19 17 25 25 C 1.40891 * 119.79703 * 359.69267 * 16 15 14 26 26 C 1.36314 * 119.88991 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46854 * 300.00348 * 1 2 3 28 28 H 1.08999 * 109.46828 * 59.99782 * 1 2 3 29 29 H 1.08998 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47054 * 240.00309 * 2 1 3 31 31 H 1.09006 * 109.47196 * 120.00407 * 2 1 3 32 32 H 1.08996 * 109.46739 * 300.00064 * 3 2 1 33 33 H 1.08995 * 109.46817 * 59.99875 * 3 2 1 34 34 H 1.09003 * 109.47700 * 299.99909 * 4 3 2 35 35 H 1.08995 * 109.47311 * 60.00198 * 4 3 2 36 36 H 1.09000 * 109.46827 * 304.99996 * 7 5 4 37 37 H 1.09005 * 109.46968 * 64.99936 * 7 5 4 38 38 H 1.09006 * 109.47139 * 300.00163 * 8 7 5 39 39 H 1.09005 * 109.47271 * 60.00047 * 8 7 5 40 40 H 1.08998 * 109.46850 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.46827 * 299.99922 * 9 8 7 42 42 H 1.09001 * 109.46559 * 60.00116 * 9 8 7 43 43 H 0.96998 * 120.00022 * 334.99853 * 10 5 4 44 44 H 1.08000 * 119.94608 * 0.02562 * 14 13 11 45 45 H 1.07995 * 120.05601 * 180.24919 * 15 14 13 46 46 H 0.97000 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.07997 * 120.05187 * 179.97438 * 25 16 15 48 48 H 1.07993 * 119.94975 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6452 3.4237 0.8431 7 6 5.6049 2.8867 0.1277 8 6 6.1045 4.3272 0.2537 9 6 7.6294 4.3290 0.3794 10 7 3.6931 3.5403 -1.2504 11 6 3.5663 4.8813 -1.2978 12 8 3.7735 5.5471 -0.3018 13 6 3.1768 5.5418 -2.5595 14 6 2.9452 4.7734 -3.7069 15 6 2.5797 5.3783 -4.8726 16 6 2.4470 6.7800 -4.9247 17 6 2.0756 7.4114 -6.1308 18 1 2.3467 8.4420 -6.3066 19 6 1.3546 6.7007 -7.1011 20 7 0.7287 5.6013 -6.7749 21 14 1.2892 7.3260 -8.8602 22 1 2.4177 6.7481 -9.6332 23 1 0.0036 6.9195 -9.4824 24 1 1.3941 8.8073 -8.8632 25 6 2.6867 7.5494 -3.7690 26 6 3.0462 6.9350 -2.6064 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.9330 0.9287 0.8909 35 1 3.9337 0.9285 -0.8891 36 1 5.8967 2.3221 1.0132 37 1 6.0434 2.4261 -0.7577 38 1 5.8127 4.8918 -0.6319 39 1 5.6661 4.7877 1.1391 40 1 7.9853 5.3554 0.4688 41 1 7.9216 3.7643 1.2648 42 1 8.0674 3.8687 -0.5062 43 1 3.5281 3.0091 -2.0451 44 1 3.0513 3.6994 -3.6670 45 1 2.3973 4.7846 -5.7561 46 1 0.2302 5.1096 -7.4462 47 1 2.5867 8.6241 -3.8044 48 1 3.2305 7.5239 -1.7201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534655470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:41 Heat of formation + Delta-G solvation = -65.904070 kcal Electronic energy + Delta-G solvation = -24737.902280 eV Core-core repulsion = 21369.495459 eV Total energy + Delta-G solvation = -3368.406821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.51052 -37.50212 -36.38601 -34.80881 -33.85372 -33.13358 -31.07661 -29.77739 -29.41194 -27.92336 -25.84242 -24.41556 -22.25606 -21.53973 -21.05046 -20.66111 -20.32785 -19.59699 -17.51292 -16.66242 -16.25421 -15.42488 -15.30899 -14.92586 -14.28019 -14.05981 -13.86822 -13.72960 -13.48067 -13.16298 -13.02137 -12.92288 -12.69936 -12.46330 -12.10651 -12.03409 -11.80057 -11.61749 -11.45299 -11.37570 -11.29216 -11.13620 -11.00414 -10.92922 -10.82904 -10.63454 -10.57379 -10.29628 -10.16754 -10.01335 -9.54627 -9.34360 -8.86620 -8.44234 -7.70722 -7.52546 -7.02674 -4.59275 2.26039 2.92309 2.96081 2.98311 3.04696 3.74518 3.88106 3.90888 4.55942 4.59122 4.89382 4.97823 5.12223 5.23516 5.27919 5.32496 5.45606 5.56246 5.58938 5.65994 5.70763 5.74868 5.81557 5.85882 5.93660 5.95216 6.01487 6.06608 6.08818 6.14733 6.19482 6.32801 6.33310 6.34079 6.37121 6.56625 6.77149 6.79152 6.83864 7.01298 7.13818 7.15624 7.44864 7.67687 7.81406 7.87274 8.08536 8.31743 8.41172 8.64370 8.76645 9.15932 9.89387 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003671 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.032046 B = 7625.360342 C = 9238.295688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.125 4.125 5 C 0.146 3.854 6 H 0.083 0.917 7 C -0.127 4.127 8 C -0.119 4.119 9 C -0.151 4.151 10 N -0.734 5.734 11 C 0.573 3.427 12 O -0.570 6.570 13 C -0.283 4.283 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.445 4.445 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.773 5.773 21 Si 0.913 3.087 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.023 4.023 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.395 0.605 44 H 0.088 0.912 45 H 0.119 0.881 46 H 0.286 0.714 47 H 0.097 0.903 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.651 -10.198 7.299 13.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.163 4.163 5 C 0.041 3.959 6 H 0.101 0.899 7 C -0.166 4.166 8 C -0.157 4.157 9 C -0.208 4.208 10 N -0.387 5.387 11 C 0.367 3.633 12 O -0.452 6.452 13 C -0.288 4.288 14 C -0.082 4.082 15 C -0.198 4.198 16 C 0.125 3.875 17 C -0.472 4.472 18 H 0.102 0.898 19 C -0.146 4.146 20 N -0.396 5.396 21 Si 0.737 3.263 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.259 4.259 26 C -0.042 4.042 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.230 0.770 44 H 0.106 0.894 45 H 0.137 0.863 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.623 -9.923 7.922 13.204 hybrid contribution -0.242 -0.143 -1.238 1.270 sum 3.381 -10.066 6.684 12.547 Atomic orbital electron populations 1.21780 0.95994 1.01275 1.02079 1.21528 0.95863 0.97040 1.01619 1.21627 0.94960 0.96458 1.02859 1.21881 0.96028 0.95923 1.02485 1.20897 0.93968 0.92396 0.88613 0.89909 1.22034 0.95555 0.97742 1.01255 1.21583 0.94181 0.96264 1.03648 1.21805 0.97118 1.01125 1.00750 1.45970 1.72652 1.07531 1.12525 1.18489 0.75100 0.80991 0.88694 1.90635 1.53027 1.64404 1.37152 1.18950 1.22702 0.94030 0.93095 1.20475 0.97891 0.96580 0.93280 1.20971 1.06148 0.95299 0.97343 1.17779 0.85998 0.92064 0.91626 1.19853 1.28724 0.99283 0.99376 0.89760 1.26085 0.92969 0.94101 1.01451 1.69747 1.20121 1.13646 1.36074 0.86219 0.78626 0.80624 0.80870 1.18950 1.20033 1.18289 1.20716 1.13587 0.98353 0.93222 1.20356 0.94235 0.92908 0.96684 0.92853 0.92495 0.93057 0.92159 0.92380 0.91338 0.92027 0.90982 0.91631 0.92004 0.92247 0.90913 0.91757 0.93105 0.93509 0.93329 0.77030 0.89438 0.86287 0.90285 0.88494 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.12 -1.17 5.93 -26.73 -0.16 -1.33 16 3 C -0.12 -1.35 5.10 -26.73 -0.14 -1.48 16 4 C -0.13 -1.32 4.75 -26.73 -0.13 -1.45 16 5 C 0.15 1.98 2.26 -67.93 -0.15 1.83 16 6 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 7 C -0.13 -1.63 4.89 -26.73 -0.13 -1.76 16 8 C -0.12 -1.80 4.53 -26.73 -0.12 -1.92 16 9 C -0.15 -1.91 9.91 37.16 0.37 -1.54 16 10 N -0.73 -11.76 4.43 -54.81 -0.24 -12.00 16 11 C 0.57 11.65 6.33 -12.42 -0.08 11.57 16 12 O -0.57 -12.75 13.46 5.29 0.07 -12.68 16 13 C -0.28 -6.36 5.89 -104.73 -0.62 -6.98 16 14 C -0.06 -1.38 9.47 -39.60 -0.38 -1.76 16 15 C -0.18 -4.35 8.64 -39.27 -0.34 -4.69 16 16 C 0.13 3.27 5.58 -106.80 -0.60 2.67 16 17 C -0.44 -11.08 9.04 -37.74 -0.34 -11.42 16 18 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 19 C 0.08 1.75 5.14 -17.31 -0.09 1.66 16 20 N -0.77 -18.49 10.95 55.56 0.61 -17.88 16 21 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.28 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 25 C -0.24 -5.79 9.73 -39.27 -0.38 -6.18 16 26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.87 7.75 -51.93 -0.40 0.47 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.34 5.64 -51.93 -0.29 1.04 16 39 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.39 5.83 6.60 -40.82 -0.27 5.56 16 44 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 45 H 0.12 2.95 6.16 -52.49 -0.32 2.62 16 46 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 47 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 48 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -26.78 382.08 -10.41 -37.19 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.29 Total: 12.12 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -3.29 Total: -24.77 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.37 Total: -29.88 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -26.78 -10.41 -37.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534655470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.712 kcal (2) G-P(sol) polarization free energy of solvation -26.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds