Wall clock time and date at job start Tue Mar 31 2020 09:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47549 * 2 1 4 4 C 1.52992 * 109.47222 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47222 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46911 * 54.99911 * 5 4 3 7 7 C 1.53001 * 109.47472 * 174.99974 * 5 4 3 8 8 C 1.52994 * 109.47204 * 185.00074 * 7 5 4 9 9 C 1.53001 * 109.47204 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.47133 * 295.00132 * 5 4 3 11 11 C 1.34781 * 120.00131 * 154.99456 * 10 5 4 12 12 O 1.21587 * 120.00059 * 0.02562 * 11 10 5 13 13 C 1.47639 * 120.00049 * 179.97438 * 11 10 5 14 14 C 1.40019 * 119.89494 * 359.73324 * 13 11 10 15 15 C 1.36322 * 120.10648 * 179.71333 * 14 13 11 16 16 C 1.40890 * 119.88764 * 0.57897 * 15 14 13 17 17 C 1.41111 * 120.10211 * 179.67336 * 16 15 14 18 18 H 1.08000 * 120.00284 * 204.65191 * 17 16 15 19 19 C 1.40232 * 119.99897 * 24.65297 * 17 16 15 20 20 N 1.30649 * 120.00020 * 17.86108 * 19 17 16 21 21 Si 1.86799 * 119.99954 * 197.86663 * 19 17 16 22 22 H 1.48495 * 109.47124 * 89.99825 * 21 19 17 23 23 H 1.48500 * 109.46920 * 209.99684 * 21 19 17 24 24 H 1.48503 * 109.46859 * 329.99464 * 21 19 17 25 25 C 1.40891 * 119.79703 * 359.69267 * 16 15 14 26 26 C 1.36314 * 119.88991 * 0.02562 * 25 16 15 27 27 H 1.08997 * 109.46854 * 300.00348 * 1 2 3 28 28 H 1.08999 * 109.46828 * 59.99782 * 1 2 3 29 29 H 1.08998 * 109.47566 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47054 * 240.00309 * 2 1 3 31 31 H 1.09006 * 109.47196 * 120.00407 * 2 1 3 32 32 H 1.08996 * 109.46739 * 300.00064 * 3 2 1 33 33 H 1.08995 * 109.46817 * 59.99875 * 3 2 1 34 34 H 1.09003 * 109.47700 * 299.99909 * 4 3 2 35 35 H 1.08995 * 109.47311 * 60.00198 * 4 3 2 36 36 H 1.09000 * 109.46827 * 304.99996 * 7 5 4 37 37 H 1.09005 * 109.46968 * 64.99936 * 7 5 4 38 38 H 1.09006 * 109.47139 * 300.00163 * 8 7 5 39 39 H 1.09005 * 109.47271 * 60.00047 * 8 7 5 40 40 H 1.08998 * 109.46850 * 179.97438 * 9 8 7 41 41 H 1.09000 * 109.46827 * 299.99922 * 9 8 7 42 42 H 1.09001 * 109.46559 * 60.00116 * 9 8 7 43 43 H 0.96998 * 120.00022 * 334.99853 * 10 5 4 44 44 H 1.08000 * 119.94608 * 0.02562 * 14 13 11 45 45 H 1.07995 * 120.05601 * 180.24919 * 15 14 13 46 46 H 0.97000 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.07997 * 120.05187 * 179.97438 * 25 16 15 48 48 H 1.07993 * 119.94975 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0013 6 1 3.6452 3.4237 0.8431 7 6 5.6049 2.8867 0.1277 8 6 6.1045 4.3272 0.2537 9 6 7.6294 4.3290 0.3794 10 7 3.6931 3.5403 -1.2504 11 6 3.5663 4.8813 -1.2978 12 8 3.7735 5.5471 -0.3018 13 6 3.1768 5.5418 -2.5595 14 6 2.9452 4.7734 -3.7069 15 6 2.5797 5.3783 -4.8726 16 6 2.4470 6.7800 -4.9247 17 6 2.0756 7.4114 -6.1308 18 1 2.3467 8.4420 -6.3066 19 6 1.3546 6.7007 -7.1011 20 7 0.7287 5.6013 -6.7749 21 14 1.2892 7.3260 -8.8602 22 1 2.4177 6.7481 -9.6332 23 1 0.0036 6.9195 -9.4824 24 1 1.3941 8.8073 -8.8632 25 6 2.6867 7.5494 -3.7690 26 6 3.0462 6.9350 -2.6064 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.9330 0.9287 0.8909 35 1 3.9337 0.9285 -0.8891 36 1 5.8967 2.3221 1.0132 37 1 6.0434 2.4261 -0.7577 38 1 5.8127 4.8918 -0.6319 39 1 5.6661 4.7877 1.1391 40 1 7.9853 5.3554 0.4688 41 1 7.9216 3.7643 1.2648 42 1 8.0674 3.8687 -0.5062 43 1 3.5281 3.0091 -2.0451 44 1 3.0513 3.6994 -3.6670 45 1 2.3973 4.7846 -5.7561 46 1 0.2302 5.1096 -7.4462 47 1 2.5867 8.6241 -3.8044 48 1 3.2305 7.5239 -1.7201 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534655470.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:41 Heat of formation + Delta-G solvation = -77.254928 kcal Electronic energy + Delta-G solvation = -24738.394490 eV Core-core repulsion = 21369.495459 eV Total energy + Delta-G solvation = -3368.899032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02056 -39.16387 -37.72071 -35.82182 -35.62123 -34.41106 -32.44782 -31.36186 -31.17691 -28.94882 -27.58944 -25.40377 -23.86516 -22.84140 -22.48814 -21.73399 -21.52026 -21.18115 -19.35415 -18.26940 -17.56557 -17.05699 -16.37121 -16.12964 -15.74775 -15.60755 -15.25373 -14.99614 -14.81493 -14.48477 -14.34595 -14.15842 -13.93867 -13.79454 -13.63346 -13.43449 -13.19929 -12.90129 -12.83902 -12.63110 -12.56679 -12.40001 -12.32952 -12.03197 -11.91134 -11.84343 -11.74312 -11.47215 -11.38072 -11.35610 -11.19962 -11.10485 -10.54029 -9.84914 -9.55999 -9.38013 -8.78552 -6.47529 0.48435 1.15389 1.38714 1.43759 1.52784 2.15814 2.21196 2.51440 2.82286 3.61538 3.70781 4.04874 4.05938 4.16875 4.23329 4.28666 4.30970 4.37138 4.43341 4.46222 4.52582 4.63681 4.72316 4.82979 4.87304 4.91392 4.93520 4.98205 5.03080 5.03518 5.10390 5.12950 5.17456 5.20568 5.28366 5.30997 5.34222 5.39553 5.43530 5.52948 5.57792 5.59248 5.78897 5.85776 5.96950 6.00493 6.24055 6.54976 6.77969 6.81714 6.90884 7.57786 8.16775 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012364 B = 0.003671 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.032046 B = 7625.360342 C = 9238.295688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.115 4.115 5 C 0.144 3.856 6 H 0.061 0.939 7 C -0.121 4.121 8 C -0.119 4.119 9 C -0.146 4.146 10 N -0.717 5.717 11 C 0.574 3.426 12 O -0.594 6.594 13 C -0.291 4.291 14 C -0.054 4.054 15 C -0.198 4.198 16 C 0.101 3.899 17 C -0.478 4.478 18 H 0.083 0.917 19 C 0.039 3.961 20 N -0.799 5.799 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.264 1.264 24 H -0.259 1.259 25 C -0.254 4.254 26 C -0.034 4.034 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.403 0.597 44 H 0.122 0.878 45 H 0.113 0.887 46 H 0.296 0.704 47 H 0.101 0.899 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -12.677 7.171 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.152 4.152 5 C 0.039 3.961 6 H 0.079 0.921 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.203 4.203 10 N -0.369 5.369 11 C 0.367 3.633 12 O -0.478 6.478 13 C -0.295 4.295 14 C -0.073 4.073 15 C -0.217 4.217 16 C 0.098 3.902 17 C -0.505 4.505 18 H 0.101 0.899 19 C -0.180 4.180 20 N -0.423 5.423 21 Si 0.807 3.193 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.182 1.182 25 C -0.274 4.274 26 C -0.053 4.053 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.239 0.761 44 H 0.139 0.861 45 H 0.131 0.869 46 H 0.108 0.892 47 H 0.119 0.881 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.340 -12.440 7.811 15.317 hybrid contribution -0.468 0.597 -1.070 1.312 sum 3.871 -11.844 6.741 14.167 Atomic orbital electron populations 1.21803 0.96332 1.01903 1.01352 1.21497 0.95574 0.95829 1.02666 1.21608 0.95566 0.97420 1.01332 1.21841 0.95311 0.93655 1.04411 1.21108 0.94825 0.93793 0.86331 0.92092 1.22006 0.94461 0.96397 1.03078 1.21506 0.96000 0.97296 1.00841 1.21759 0.95101 1.01320 1.02110 1.45850 1.71047 1.06035 1.13980 1.18217 0.75176 0.82409 0.87516 1.90624 1.54153 1.65387 1.37640 1.19288 1.21842 0.93966 0.94412 1.20721 0.96216 0.98246 0.92139 1.21004 1.07598 0.95058 0.98031 1.18117 0.86803 0.92953 0.92289 1.20101 1.30207 0.99777 1.00422 0.89886 1.26897 0.91830 0.94071 1.05155 1.69765 1.20224 1.14507 1.37791 0.85122 0.79054 0.79875 0.75283 1.18289 1.18879 1.18223 1.20845 1.14367 0.98728 0.93455 1.20494 0.94531 0.93832 0.96478 0.93106 0.93759 0.91757 0.91464 0.90872 0.93468 0.93076 0.88478 0.90131 0.89112 0.91202 0.94698 0.93777 0.93725 0.91323 0.92601 0.76075 0.86055 0.86934 0.89234 0.88092 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.12 -1.94 5.93 30.59 0.18 -1.76 16 3 C -0.12 -2.48 5.10 30.59 0.16 -2.33 16 4 C -0.11 -2.05 4.75 30.59 0.15 -1.91 16 5 C 0.14 3.64 2.26 44.99 0.10 3.74 16 6 H 0.06 1.85 7.58 -2.39 -0.02 1.84 16 7 C -0.12 -2.79 4.89 30.59 0.15 -2.64 16 8 C -0.12 -3.51 4.53 30.59 0.14 -3.37 16 9 C -0.15 -3.45 9.91 71.98 0.71 -2.73 16 10 N -0.72 -22.30 4.43 -445.59 -1.97 -24.28 16 11 C 0.57 23.56 6.33 86.73 0.55 24.11 16 12 O -0.59 -27.25 13.46 -3.99 -0.05 -27.30 16 13 C -0.29 -13.28 5.89 -19.93 -0.12 -13.39 16 14 C -0.05 -2.39 9.47 22.25 0.21 -2.18 16 15 C -0.20 -9.84 8.64 22.47 0.19 -9.64 16 16 C 0.10 5.34 5.58 -21.28 -0.12 5.22 16 17 C -0.48 -24.47 9.04 23.46 0.21 -24.26 16 18 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 19 C 0.04 1.84 5.14 85.35 0.44 2.28 16 20 N -0.80 -38.46 10.95 21.87 0.24 -38.22 16 21 Si 0.99 35.11 29.60 68.60 2.03 37.14 16 22 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 23 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 24 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 25 C -0.25 -12.85 9.73 22.47 0.22 -12.63 16 26 C -0.03 -1.66 9.52 22.25 0.21 -1.45 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.05 1.16 7.75 -2.39 -0.02 1.14 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.03 1.29 5.64 -2.38 -0.01 1.27 16 39 H 0.04 1.45 7.84 -2.38 -0.02 1.43 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.40 11.19 6.60 -92.71 -0.61 10.58 16 44 H 0.12 4.37 6.37 -2.91 -0.02 4.35 16 45 H 0.11 5.68 6.16 -2.91 -0.02 5.66 16 46 H 0.30 12.66 8.29 -92.71 -0.77 11.89 16 47 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 48 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 Total: -1.00 -60.20 382.08 4.65 -55.55 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: 0.31 Total: 42.07 kcal Atomic # 6 Polarization: -49.06 SS G_CDS: 4.10 Total: -44.96 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -1.74 Total: -62.50 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.05 Total: -27.30 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Total: -60.20 4.65 -55.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534655470.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.707 kcal (2) G-P(sol) polarization free energy of solvation -60.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds