Wall clock time and date at job start Tue Mar 31 2020 08:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38359 * 119.85271 * 59.72434 * 4 2 1 6 6 C 1.37963 * 120.14445 * 179.72287 * 5 4 2 7 7 C 1.39579 * 119.85066 * 0.54687 * 6 5 4 8 8 C 1.47846 * 120.14109 * 179.70273 * 7 6 5 9 9 O 1.21553 * 119.99912 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46969 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.46799 * 299.99683 * 12 11 10 14 14 C 1.53000 * 109.47335 * 59.99711 * 12 11 10 15 15 C 1.53003 * 109.46946 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.46900 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00205 * 359.97438 * 16 15 12 18 18 C 1.37884 * 119.99726 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99997 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47001 * 59.99639 * 20 18 16 22 22 H 1.48494 * 109.47266 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47015 * 300.00137 * 20 18 16 24 24 C 1.39568 * 119.71026 * 359.72786 * 7 6 5 25 25 C 1.37963 * 119.85740 * 359.97438 * 24 7 6 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08003 * 119.92630 * 0.02562 * 5 4 2 34 34 H 1.08001 * 120.07046 * 180.24913 * 6 5 4 35 35 H 0.97004 * 119.99463 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.46711 * 300.00325 * 11 10 8 37 37 H 1.08998 * 109.46835 * 60.00095 * 11 10 8 38 38 H 1.08992 * 109.47049 * 60.00203 * 13 12 11 39 39 H 1.09002 * 109.46604 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46947 * 300.00335 * 13 12 11 41 41 H 1.09000 * 109.46762 * 60.00503 * 14 12 11 42 42 H 1.09002 * 109.46446 * 179.97438 * 14 12 11 43 43 H 1.08992 * 109.47194 * 300.00214 * 14 12 11 44 44 H 1.08998 * 109.46825 * 300.00005 * 15 12 11 45 45 H 1.08998 * 109.46899 * 59.99507 * 15 12 11 46 46 H 0.96997 * 119.99747 * 179.97438 * 19 18 16 47 47 H 1.08009 * 120.07341 * 179.97438 * 24 7 6 48 48 H 1.07992 * 119.93128 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8807 -3.6161 7 6 2.9554 -2.0157 -3.4916 8 6 3.4478 -2.7129 -4.6988 9 8 4.1463 -3.7014 -4.5873 10 7 3.1222 -2.2524 -5.9229 11 6 3.6105 -2.9430 -7.1191 12 6 3.1010 -2.2213 -8.3683 13 6 1.5709 -2.2210 -8.3685 14 6 3.6113 -0.7789 -8.3679 15 6 3.6105 -2.9429 -9.6176 16 6 3.1081 -2.2324 -10.8479 17 1 2.4871 -1.3544 -10.7488 18 6 3.4412 -2.7034 -12.1003 19 7 4.1970 -3.7730 -12.2210 20 14 2.8179 -1.8233 -13.6255 21 1 3.3122 -0.4230 -13.6256 22 1 3.3125 -2.5235 -14.8380 23 1 1.3329 -1.8240 -13.6252 24 6 3.2908 -2.4899 -2.2225 25 6 2.8280 -1.8347 -1.1000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.0670 0.6377 -2.5805 34 1 1.8892 -0.5088 -4.5953 35 1 2.5650 -1.4633 -6.0118 36 1 4.7006 -2.9429 -7.1190 37 1 3.2472 -3.9706 -7.1191 38 1 1.2076 -1.7073 -7.4786 39 1 1.2079 -1.7072 -9.2587 40 1 1.2074 -3.2486 -8.3688 41 1 4.7013 -0.7793 -8.3678 42 1 3.2486 -0.2651 -9.2581 43 1 3.2480 -0.2652 -7.4779 44 1 4.7005 -2.9436 -9.6175 45 1 3.2466 -3.9703 -9.6175 46 1 4.4310 -4.1045 -13.1020 47 1 3.9112 -3.3680 -2.1193 48 1 3.0865 -2.2008 -0.1175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554098921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:58 Heat of formation + Delta-G solvation = -47.422729 kcal Electronic energy + Delta-G solvation = -24332.027653 eV Core-core repulsion = 20964.422243 eV Total energy + Delta-G solvation = -3367.605410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33739 -38.95709 -37.09727 -35.50999 -33.69684 -32.17688 -31.12141 -30.23423 -27.52078 -27.14958 -26.52807 -26.34566 -24.20324 -22.92903 -22.71952 -20.84879 -19.95156 -18.72463 -17.43313 -16.47531 -16.29316 -15.54624 -15.11385 -15.08651 -14.91288 -14.51296 -14.13296 -13.96154 -13.89513 -13.59100 -13.47704 -13.13539 -12.87508 -12.74199 -12.71122 -12.39732 -12.06986 -12.05924 -11.63011 -11.50926 -11.17625 -11.16284 -11.01271 -10.96512 -10.87700 -10.64000 -10.41346 -10.27737 -9.88649 -9.86206 -9.19438 -9.18360 -8.99818 -8.94254 -8.67077 -8.35983 -6.00074 -4.01523 0.71394 1.17540 2.89085 3.31696 3.36998 3.37368 3.41469 3.77629 4.26434 4.39561 4.44806 4.68398 4.75015 4.80344 4.87809 5.05370 5.13214 5.24537 5.25604 5.35199 5.44850 5.47260 5.49082 5.55617 5.61464 5.68261 5.74733 5.78897 5.83062 5.85081 6.11521 6.15147 6.17493 6.21889 6.31406 6.33490 6.38046 6.54453 6.61410 6.67595 6.75494 7.04491 7.06230 7.11407 7.63317 7.72896 7.75832 7.98357 8.37879 8.41895 9.02938 9.61453 11.11329 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.002526 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.614977 B =11083.743642 C =11713.069486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.060 4.060 3 C -0.145 4.145 4 C -0.057 4.057 5 C -0.123 4.123 6 C -0.084 4.084 7 C -0.132 4.132 8 C 0.549 3.451 9 O -0.543 6.543 10 N -0.715 5.715 11 C 0.128 3.872 12 C -0.073 4.073 13 C -0.127 4.127 14 C -0.127 4.127 15 C 0.036 3.964 16 C -0.512 4.512 17 H 0.059 0.941 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.278 1.278 24 C -0.059 4.059 25 C -0.127 4.127 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.397 0.603 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.136 0.864 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 9.442 24.288 26.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.202 4.202 4 C -0.057 4.057 5 C -0.141 4.141 6 C -0.103 4.103 7 C -0.135 4.135 8 C 0.336 3.664 9 O -0.422 6.422 10 N -0.367 5.367 11 C 0.005 3.995 12 C -0.073 4.073 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.001 4.001 16 C -0.550 4.550 17 H 0.077 0.923 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.078 4.078 25 C -0.145 4.145 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.153 0.847 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.088 8.609 24.185 26.384 hybrid contribution -0.533 0.756 -1.075 1.418 sum -6.621 9.365 23.111 25.800 Atomic orbital electron populations 1.21868 0.94077 1.02204 1.02091 1.20192 0.96159 0.96195 0.95286 1.21866 1.01379 0.94900 1.02089 1.20068 0.95968 0.94922 0.94789 1.20895 1.01033 1.00555 0.91602 1.21333 0.95724 0.94189 0.99030 1.20068 1.01753 0.97626 0.94096 1.18299 0.80534 0.84151 0.83392 1.90761 1.38283 1.26254 1.86896 1.46144 1.52942 1.31829 1.05788 1.21669 0.99027 0.96082 0.82733 1.20913 0.95474 0.95860 0.95057 1.21769 0.95275 1.01238 1.00184 1.21766 1.00627 0.95884 1.00186 1.19087 0.96387 0.95237 0.89416 1.21137 1.31261 1.12094 0.90513 0.92317 1.25018 0.95318 0.95090 0.99084 1.69954 1.36876 1.22966 1.23557 0.86704 0.79132 0.79753 0.82662 1.20333 1.21400 1.20338 1.21278 0.96842 0.98839 0.90799 1.21039 0.98968 0.95880 0.98641 0.92406 0.92285 0.92272 0.90294 0.92280 0.92405 0.92283 0.85576 0.85607 0.76626 0.91645 0.91635 0.95359 0.91355 0.93291 0.93291 0.91355 0.95354 0.96302 0.96304 0.92971 0.84658 0.85552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.00 37.16 0.33 -0.50 16 2 C -0.06 -0.38 3.09 -91.77 -0.28 -0.67 16 3 C -0.15 -0.84 9.01 37.16 0.33 -0.50 16 4 C -0.06 -0.49 4.79 -104.53 -0.50 -0.99 16 5 C -0.12 -1.09 8.69 -39.64 -0.34 -1.43 16 6 C -0.08 -0.87 9.54 -39.18 -0.37 -1.25 16 7 C -0.13 -1.70 5.87 -104.97 -0.62 -2.32 16 8 C 0.55 8.81 7.77 -12.33 -0.10 8.71 16 9 O -0.54 -10.67 16.35 5.32 0.09 -10.58 16 10 N -0.72 -10.84 4.91 -61.25 -0.30 -11.14 16 11 C 0.13 2.30 4.56 -4.04 -0.02 2.28 16 12 C -0.07 -1.38 0.54 -154.50 -0.08 -1.46 16 13 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 14 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 15 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 16 C -0.51 -13.54 7.65 -34.44 -0.26 -13.80 16 17 H 0.06 1.49 5.68 -52.49 -0.30 1.19 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 20 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C -0.06 -0.69 9.60 -39.19 -0.38 -1.07 16 25 C -0.13 -1.19 9.65 -39.64 -0.38 -1.57 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.34 7.36 -51.93 -0.38 -0.04 16 29 H 0.08 0.45 7.87 -51.93 -0.41 0.04 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.34 7.39 -51.93 -0.38 -0.05 16 33 H 0.13 0.87 7.08 -52.48 -0.37 0.50 16 34 H 0.13 1.12 6.41 -52.49 -0.34 0.78 16 35 H 0.40 5.08 4.20 -40.82 -0.17 4.91 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 39 H 0.07 1.28 6.61 -51.93 -0.34 0.94 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 43 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.14 1.62 7.65 -52.48 -0.40 1.22 16 48 H 0.13 0.90 7.94 -52.49 -0.42 0.48 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -31.09 379.01 -9.00 -40.09 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.93 Total: 1.64 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.28 Total: -16.19 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.44 Total: -36.81 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.09 -9.00 -40.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554098921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.336 kcal (2) G-P(sol) polarization free energy of solvation -31.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds