Wall clock time and date at job start Tue Mar 31 2020 08:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38359 * 119.85271 * 59.72434 * 4 2 1 6 6 C 1.37963 * 120.14445 * 179.72287 * 5 4 2 7 7 C 1.39579 * 119.85066 * 0.54687 * 6 5 4 8 8 C 1.47846 * 120.14109 * 179.70273 * 7 6 5 9 9 O 1.21553 * 119.99912 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00339 * 0.02562 * 8 7 6 11 11 C 1.46501 * 120.00153 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.46969 * 180.02562 * 11 10 8 13 13 C 1.53008 * 109.46799 * 299.99683 * 12 11 10 14 14 C 1.53000 * 109.47335 * 59.99711 * 12 11 10 15 15 C 1.53003 * 109.46946 * 180.02562 * 12 11 10 16 16 C 1.50696 * 109.46900 * 179.97438 * 15 12 11 17 17 H 1.08000 * 120.00205 * 359.97438 * 16 15 12 18 18 C 1.37884 * 119.99726 * 179.97438 * 16 15 12 19 19 N 1.31514 * 119.99997 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00068 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47001 * 59.99639 * 20 18 16 22 22 H 1.48494 * 109.47266 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47015 * 300.00137 * 20 18 16 24 24 C 1.39568 * 119.71026 * 359.72786 * 7 6 5 25 25 C 1.37963 * 119.85740 * 359.97438 * 24 7 6 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08003 * 119.92630 * 0.02562 * 5 4 2 34 34 H 1.08001 * 120.07046 * 180.24913 * 6 5 4 35 35 H 0.97004 * 119.99463 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.46711 * 300.00325 * 11 10 8 37 37 H 1.08998 * 109.46835 * 60.00095 * 11 10 8 38 38 H 1.08992 * 109.47049 * 60.00203 * 13 12 11 39 39 H 1.09002 * 109.46604 * 180.02562 * 13 12 11 40 40 H 1.09003 * 109.46947 * 300.00335 * 13 12 11 41 41 H 1.09000 * 109.46762 * 60.00503 * 14 12 11 42 42 H 1.09002 * 109.46446 * 179.97438 * 14 12 11 43 43 H 1.08992 * 109.47194 * 300.00214 * 14 12 11 44 44 H 1.08998 * 109.46825 * 300.00005 * 15 12 11 45 45 H 1.08998 * 109.46899 * 59.99507 * 15 12 11 46 46 H 0.96997 * 119.99747 * 179.97438 * 19 18 16 47 47 H 1.08009 * 120.07341 * 179.97438 * 24 7 6 48 48 H 1.07992 * 119.93128 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6915 -0.2384 -2.4856 6 6 2.1527 -0.8807 -3.6161 7 6 2.9554 -2.0157 -3.4916 8 6 3.4478 -2.7129 -4.6988 9 8 4.1463 -3.7014 -4.5873 10 7 3.1222 -2.2524 -5.9229 11 6 3.6105 -2.9430 -7.1191 12 6 3.1010 -2.2213 -8.3683 13 6 1.5709 -2.2210 -8.3685 14 6 3.6113 -0.7789 -8.3679 15 6 3.6105 -2.9429 -9.6176 16 6 3.1081 -2.2324 -10.8479 17 1 2.4871 -1.3544 -10.7488 18 6 3.4412 -2.7034 -12.1003 19 7 4.1970 -3.7730 -12.2210 20 14 2.8179 -1.8233 -13.6255 21 1 3.3122 -0.4230 -13.6256 22 1 3.3125 -2.5235 -14.8380 23 1 1.3329 -1.8240 -13.6252 24 6 3.2908 -2.4899 -2.2225 25 6 2.8280 -1.8347 -1.1000 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.0670 0.6377 -2.5805 34 1 1.8892 -0.5088 -4.5953 35 1 2.5650 -1.4633 -6.0118 36 1 4.7006 -2.9429 -7.1190 37 1 3.2472 -3.9706 -7.1191 38 1 1.2076 -1.7073 -7.4786 39 1 1.2079 -1.7072 -9.2587 40 1 1.2074 -3.2486 -8.3688 41 1 4.7013 -0.7793 -8.3678 42 1 3.2486 -0.2651 -9.2581 43 1 3.2480 -0.2652 -7.4779 44 1 4.7005 -2.9436 -9.6175 45 1 3.2466 -3.9703 -9.6175 46 1 4.4310 -4.1045 -13.1020 47 1 3.9112 -3.3680 -2.1193 48 1 3.0865 -2.2008 -0.1175 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554098921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:57 Heat of formation + Delta-G solvation = -63.889084 kcal Electronic energy + Delta-G solvation = -24332.741688 eV Core-core repulsion = 20964.422243 eV Total energy + Delta-G solvation = -3368.319445 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39359 -39.98358 -38.61709 -36.18350 -35.31732 -34.00809 -31.95154 -31.06785 -29.08924 -27.97788 -27.92482 -27.72486 -25.45578 -24.31343 -23.68280 -21.86121 -20.79983 -20.10252 -18.73653 -18.35172 -17.40204 -16.56370 -16.45931 -16.41638 -15.91089 -15.87267 -15.20704 -15.01200 -14.86889 -14.57678 -14.42404 -14.41739 -14.10306 -13.94354 -13.83696 -13.64935 -13.25487 -12.88040 -12.81530 -12.75617 -12.59392 -12.33864 -12.29343 -12.21679 -12.01083 -11.98437 -11.78186 -11.55264 -11.50364 -11.24731 -10.93144 -10.82592 -10.50469 -10.20587 -9.95428 -9.66785 -8.13537 -6.21589 -0.15931 0.41620 1.42951 1.45179 1.52365 1.82451 2.14118 2.45298 2.86676 3.20745 3.59718 3.77230 3.84171 3.95738 4.00834 4.05892 4.18742 4.20473 4.35455 4.42668 4.52521 4.53765 4.66860 4.69395 4.74845 4.87373 4.89828 4.94214 4.97475 5.05375 5.06788 5.08407 5.11057 5.18096 5.31422 5.35302 5.38688 5.42834 5.44524 5.44958 5.49381 5.51798 5.56246 5.67523 5.79166 5.89559 5.93666 6.29844 6.51804 6.93225 7.16372 7.46075 8.98838 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027948 B = 0.002526 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.614977 B =11083.743642 C =11713.069486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.145 4.145 4 C -0.049 4.049 5 C -0.121 4.121 6 C -0.081 4.081 7 C -0.157 4.157 8 C 0.548 3.452 9 O -0.590 6.590 10 N -0.703 5.703 11 C 0.140 3.860 12 C -0.064 4.064 13 C -0.123 4.123 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.513 4.513 17 H 0.074 0.926 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.960 3.040 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.266 1.266 24 C -0.073 4.073 25 C -0.128 4.128 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.412 0.588 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.069 0.931 44 H -0.014 1.014 45 H -0.014 1.014 46 H 0.259 0.741 47 H 0.121 0.879 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.001 12.730 26.029 30.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.049 4.049 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.160 4.160 8 C 0.337 3.663 9 O -0.472 6.472 10 N -0.355 5.355 11 C 0.016 3.984 12 C -0.064 4.064 13 C -0.180 4.180 14 C -0.180 4.180 15 C 0.002 3.998 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.785 3.215 21 H -0.191 1.191 22 H -0.218 1.218 23 H -0.191 1.191 24 C -0.092 4.092 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.004 0.996 45 H 0.004 0.996 46 H 0.068 0.932 47 H 0.139 0.861 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.446 11.942 25.942 29.782 hybrid contribution 0.191 -0.268 -1.482 1.518 sum -8.255 11.674 24.460 28.333 Atomic orbital electron populations 1.21870 0.93352 1.02050 1.02909 1.20255 0.96639 0.96432 0.94374 1.21868 1.00982 0.94420 1.02906 1.20431 0.94493 0.94133 0.95879 1.21212 1.00665 1.00964 0.91043 1.21518 0.94795 0.93104 1.00584 1.19861 1.04195 0.99238 0.92663 1.18865 0.79545 0.83564 0.84288 1.90732 1.40466 1.28456 1.87539 1.45887 1.52936 1.31991 1.04683 1.21272 0.97874 0.95457 0.83771 1.20710 0.96788 0.96331 0.92594 1.21709 0.93482 1.01047 1.01735 1.21706 0.99968 0.94560 1.01738 1.18973 0.94292 0.94221 0.92326 1.21553 1.30486 1.12136 0.90970 0.90792 1.25975 0.95676 0.95882 1.02794 1.70121 1.38770 1.24968 1.24148 0.85577 0.78967 0.78744 0.78218 1.19077 1.21799 1.19093 1.21313 0.97418 0.99024 0.91479 1.21265 0.98665 0.95940 0.98709 0.93050 0.91039 0.91976 0.89490 0.91033 0.93053 0.91993 0.82949 0.83858 0.74873 0.93497 0.93489 0.91245 0.92236 0.94445 0.94442 0.92235 0.91240 0.99596 0.99597 0.93189 0.86082 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.00 71.98 0.65 -0.52 16 2 C -0.06 -0.55 3.09 -11.54 -0.04 -0.58 16 3 C -0.14 -1.17 9.01 71.98 0.65 -0.52 16 4 C -0.05 -0.69 4.79 -19.81 -0.09 -0.79 16 5 C -0.12 -1.72 8.69 22.23 0.19 -1.53 16 6 C -0.08 -1.47 9.54 22.53 0.21 -1.26 16 7 C -0.16 -3.90 5.87 -20.09 -0.12 -4.02 16 8 C 0.55 17.75 7.77 86.79 0.67 18.42 16 9 O -0.59 -24.29 16.35 -3.88 -0.06 -24.36 16 10 N -0.70 -20.78 4.91 -465.97 -2.29 -23.07 16 11 C 0.14 5.20 4.56 86.38 0.39 5.59 16 12 C -0.06 -2.43 0.54 -52.18 -0.03 -2.46 16 13 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 14 C -0.12 -4.11 8.05 71.98 0.58 -3.53 16 15 C 0.04 2.02 4.04 29.85 0.12 2.14 16 16 C -0.51 -27.48 7.65 25.60 0.20 -27.28 16 17 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 19 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 20 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 C -0.07 -1.70 9.60 22.53 0.22 -1.49 16 25 C -0.13 -2.16 9.65 22.23 0.21 -1.94 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.47 7.36 -2.39 -0.02 0.45 16 29 H 0.09 0.70 7.87 -2.39 -0.02 0.68 16 30 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.47 7.39 -2.39 -0.02 0.45 16 33 H 0.15 1.38 7.08 -2.91 -0.02 1.36 16 34 H 0.14 1.98 6.41 -2.91 -0.02 1.96 16 35 H 0.41 9.42 4.20 -92.71 -0.39 9.03 16 36 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 39 H 0.06 2.11 6.61 -2.39 -0.02 2.10 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 2.11 6.62 -2.39 -0.02 2.10 16 43 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 47 H 0.12 3.07 7.65 -2.91 -0.02 3.05 16 48 H 0.15 1.79 7.94 -2.91 -0.02 1.76 16 Total: -1.00 -70.89 379.01 5.37 -65.52 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.55 Total: 16.65 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 4.86 Total: -23.17 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.00 Total: -80.18 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.36 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -70.89 5.37 -65.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554098921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.626 kcal (2) G-P(sol) polarization free energy of solvation -70.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds