Wall clock time and date at job start Tue Mar 31 2020 08:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 C 1.52995 * 109.47088 * 120.00051 * 2 1 3 5 5 C 1.53000 * 109.47550 * 305.00129 * 4 2 1 6 6 C 1.53005 * 109.47055 * 184.99896 * 4 2 1 7 7 N 1.46506 * 109.47121 * 65.00089 * 4 2 1 8 8 C 1.34770 * 119.99885 * 179.97438 * 7 4 2 9 9 O 1.21284 * 120.00136 * 359.97438 * 8 7 4 10 10 C 1.50703 * 120.00077 * 180.02562 * 8 7 4 11 11 C 1.52995 * 109.47313 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47575 * 53.80284 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80232 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80520 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38238 * 119.99736 * 179.81082 * 22 21 11 24 24 C 1.38232 * 120.00406 * 0.39259 * 23 22 21 25 25 C 1.38239 * 119.99545 * 359.86027 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95262 * 25 24 23 27 27 H 1.08996 * 109.47250 * 59.99576 * 1 2 3 28 28 H 1.08994 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47231 * 300.00043 * 1 2 3 30 30 H 1.08995 * 109.46906 * 240.00486 * 2 1 3 31 31 H 1.08998 * 109.46632 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47535 * 300.00250 * 3 2 1 33 33 H 1.09004 * 109.46799 * 60.00273 * 3 2 1 34 34 H 1.08996 * 109.47168 * 179.97438 * 5 4 2 35 35 H 1.09005 * 109.46808 * 299.99824 * 5 4 2 36 36 H 1.08996 * 109.47141 * 59.99474 * 5 4 2 37 37 H 1.09004 * 109.47001 * 300.00141 * 6 4 2 38 38 H 1.08999 * 109.46581 * 60.00175 * 6 4 2 39 39 H 1.08996 * 109.47186 * 180.02562 * 6 4 2 40 40 H 0.96995 * 119.99336 * 0.02562 * 7 4 2 41 41 H 1.09004 * 109.46905 * 59.99256 * 10 8 7 42 42 H 1.09003 * 109.46623 * 300.00340 * 10 8 7 43 43 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 45 45 H 1.08008 * 119.99812 * 180.22764 * 23 22 21 46 46 H 1.07995 * 120.00043 * 179.83073 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4299 -0.0763 2.4953 6 6 3.5649 -0.6133 1.3136 7 7 1.6524 -2.1329 1.1905 8 6 1.9964 -2.9682 2.1906 9 8 2.6272 -2.5515 3.1389 10 6 1.5983 -4.4205 2.1300 11 6 2.1081 -5.1417 3.3792 12 1 1.7620 -4.6159 4.2691 13 6 3.6149 -5.1669 3.3648 14 1 4.1444 -5.2671 2.4289 15 6 4.3174 -5.0621 4.5466 16 7 5.6324 -5.0564 4.5315 17 14 3.4013 -4.9284 6.1690 18 1 3.2130 -3.4965 6.5145 19 1 2.0758 -5.5862 6.0447 20 1 4.1871 -5.5962 7.2376 21 6 1.5822 -6.5539 3.3937 22 6 2.0014 -7.4574 2.4352 23 6 1.5219 -8.7539 2.4510 24 6 0.6171 -9.1446 3.4203 25 6 0.1940 -8.2395 4.3756 26 6 0.6763 -6.9441 4.3622 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.7929 -0.5905 3.3852 35 1 1.7184 0.9740 2.5390 36 1 0.3437 -0.1532 2.4494 37 1 3.9995 -1.0728 0.4258 38 1 3.8531 0.4370 1.3573 39 1 3.9282 -1.1275 2.2033 40 1 1.1489 -2.4663 0.4315 41 1 2.0328 -4.8796 1.2420 42 1 0.5119 -4.4977 2.0841 43 1 6.1267 -4.9823 5.3628 44 1 2.7055 -7.1513 1.6757 45 1 1.8522 -9.4609 1.7043 46 1 0.2405 -10.1566 3.4309 47 1 -0.5133 -8.5445 5.1327 48 1 0.3460 -6.2371 5.1089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568579776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:57 Heat of formation + Delta-G solvation = -28.121332 kcal Electronic energy + Delta-G solvation = -25795.314799 eV Core-core repulsion = 22428.546360 eV Total energy + Delta-G solvation = -3366.768439 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86132 -38.60377 -37.16503 -34.06637 -32.80223 -31.64358 -30.47680 -30.18007 -28.74238 -27.79501 -26.43693 -25.71803 -23.28671 -22.44784 -21.82952 -20.12832 -19.04346 -18.65184 -16.89555 -16.74051 -16.10646 -15.53372 -14.67081 -14.54036 -14.49916 -14.14408 -13.99609 -13.84416 -13.32646 -13.11324 -12.96423 -12.71611 -12.49644 -12.46625 -12.26368 -12.05352 -11.90732 -11.77834 -11.56211 -11.36360 -11.14621 -11.03589 -10.96355 -10.72134 -10.50903 -10.48036 -10.34187 -10.30858 -9.82821 -9.58352 -9.08873 -8.68842 -8.48191 -8.36583 -8.18345 -7.78854 -5.94556 -3.91537 2.11452 2.16503 3.45793 3.50304 3.53153 3.56065 3.72442 4.54454 4.61405 4.68004 4.82661 4.99318 5.31994 5.38369 5.42357 5.46613 5.53306 5.56525 5.57696 5.64754 5.71075 5.79635 5.85200 5.92013 5.96404 5.98388 5.99842 6.05905 6.11330 6.13730 6.17656 6.26164 6.27013 6.29354 6.35662 6.65430 6.67575 6.72978 6.81631 6.86294 7.04493 7.14003 7.16036 7.29571 7.60652 7.75688 7.85917 8.18400 8.56847 9.04155 9.13524 9.70599 11.18477 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.004662 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.914564 B = 6003.945467 C = 6991.185097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.183 3.817 5 C -0.166 4.166 6 C -0.166 4.166 7 N -0.741 5.741 8 C 0.517 3.483 9 O -0.497 6.497 10 C -0.118 4.118 11 C 0.057 3.943 12 H 0.049 0.951 13 C -0.485 4.485 14 H 0.070 0.930 15 C 0.086 3.914 16 N -0.900 5.900 17 Si 0.870 3.130 18 H -0.277 1.277 19 H -0.256 1.256 20 H -0.296 1.296 21 C -0.039 4.039 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.150 4.150 25 C -0.128 4.128 26 C -0.135 4.135 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.390 0.610 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.261 0.739 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.928 5.988 -9.115 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.205 4.205 4 C 0.097 3.903 5 C -0.223 4.223 6 C -0.224 4.224 7 N -0.396 5.396 8 C 0.303 3.697 9 O -0.369 6.369 10 C -0.158 4.158 11 C 0.038 3.962 12 H 0.067 0.933 13 C -0.522 4.522 14 H 0.088 0.912 15 C -0.116 4.116 16 N -0.538 5.538 17 Si 0.698 3.302 18 H -0.203 1.203 19 H -0.180 1.180 20 H -0.223 1.223 21 C -0.040 4.040 22 C -0.118 4.118 23 C -0.147 4.147 24 C -0.168 4.168 25 C -0.146 4.146 26 C -0.153 4.153 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.223 0.777 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.138 0.862 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.272 6.304 -8.265 15.333 hybrid contribution -0.466 -0.205 0.548 0.748 sum -11.737 6.099 -7.717 15.314 Atomic orbital electron populations 1.21920 0.95135 1.01873 1.01738 1.21335 0.95931 0.96727 0.97606 1.21922 1.01600 0.95265 1.01712 1.20139 0.94685 0.81050 0.94442 1.22311 1.00283 1.00287 0.99457 1.22292 0.94550 1.01558 1.04013 1.46291 1.59876 1.08850 1.24558 1.20709 0.78922 0.88065 0.81971 1.90671 1.36479 1.76937 1.32848 1.21672 0.99735 0.92081 1.02344 1.18119 0.97429 0.87062 0.93597 0.93255 1.20574 0.87084 1.49716 0.94829 0.91214 1.24868 0.94457 0.93505 0.98783 1.69889 1.06047 1.50596 1.27232 0.86961 0.80790 0.78518 0.83929 1.20269 1.18042 1.22293 1.20786 0.91477 0.99062 0.92674 1.20982 0.98810 0.92661 0.99388 1.21057 0.98285 0.96390 0.98924 1.20857 1.00220 0.98776 0.96934 1.20962 1.00705 0.94105 0.98817 1.21149 0.98545 0.96101 0.99549 0.92937 0.92607 0.92108 0.90946 0.91978 0.92812 0.92254 0.90173 0.92454 0.92830 0.93096 0.92442 0.89528 0.77675 0.89982 0.91633 0.92963 0.86219 0.87230 0.87476 0.87443 0.87099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.58 37.16 0.32 -1.03 16 2 C -0.10 -1.00 2.32 -90.62 -0.21 -1.21 16 3 C -0.15 -1.36 8.46 37.16 0.31 -1.05 16 4 C 0.18 2.48 0.53 -131.82 -0.07 2.41 16 5 C -0.17 -2.34 7.67 37.16 0.28 -2.05 16 6 C -0.17 -2.58 7.91 37.16 0.29 -2.28 16 7 N -0.74 -10.78 4.83 -47.60 -0.23 -11.01 16 8 C 0.52 9.84 7.01 -10.99 -0.08 9.76 16 9 O -0.50 -11.68 11.23 5.55 0.06 -11.62 16 10 C -0.12 -2.18 4.96 -27.88 -0.14 -2.32 16 11 C 0.06 1.30 1.17 -92.92 -0.11 1.19 16 12 H 0.05 1.19 4.94 -51.93 -0.26 0.94 16 13 C -0.49 -13.20 6.87 -34.44 -0.24 -13.43 16 14 H 0.07 2.06 8.06 -52.49 -0.42 1.64 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 17 Si 0.87 22.67 27.00 -169.99 -4.59 18.08 16 18 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.17 4.72 56.52 0.27 -5.90 16 20 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 21 C -0.04 -0.82 4.65 -104.62 -0.49 -1.31 16 22 C -0.10 -1.96 8.93 -39.58 -0.35 -2.31 16 23 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 24 C -0.15 -2.45 10.05 -39.58 -0.40 -2.85 16 25 C -0.13 -2.20 10.05 -39.58 -0.40 -2.60 16 26 C -0.14 -2.65 8.70 -39.59 -0.34 -3.00 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.50 7.18 -51.93 -0.37 0.12 16 29 H 0.06 0.57 6.35 -51.93 -0.33 0.24 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.59 6.34 -51.93 -0.33 0.26 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 34 H 0.08 1.43 6.17 -51.93 -0.32 1.11 16 35 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 36 H 0.05 0.69 6.34 -51.93 -0.33 0.36 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.77 6.34 -51.93 -0.33 0.44 16 39 H 0.09 1.73 6.16 -51.93 -0.32 1.41 16 40 H 0.39 4.55 7.65 -40.82 -0.31 4.24 16 41 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.12 2.33 7.87 -52.49 -0.41 1.92 16 45 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 46 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 47 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 48 H 0.11 2.13 7.12 -52.48 -0.37 1.76 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -32.45 364.24 -8.46 -40.91 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.86 Total: 7.75 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.10 Total: -22.25 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.54 Total: -38.36 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.06 Total: -11.62 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.59 Total: 18.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.45 -8.46 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568579776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.787 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds