Wall clock time and date at job start Tue Mar 31 2020 08:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 C 1.52995 * 109.47088 * 120.00051 * 2 1 3 5 5 C 1.53000 * 109.47550 * 305.00129 * 4 2 1 6 6 C 1.53005 * 109.47055 * 184.99896 * 4 2 1 7 7 N 1.46506 * 109.47121 * 65.00089 * 4 2 1 8 8 C 1.34770 * 119.99885 * 179.97438 * 7 4 2 9 9 O 1.21284 * 120.00136 * 359.97438 * 8 7 4 10 10 C 1.50703 * 120.00077 * 180.02562 * 8 7 4 11 11 C 1.52995 * 109.47313 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47575 * 53.80284 * 11 10 8 13 13 C 1.50707 * 109.46800 * 293.80232 * 11 10 8 14 14 H 1.07996 * 119.99939 * 324.79144 * 13 11 10 15 15 C 1.37876 * 119.99516 * 144.79724 * 13 11 10 16 16 N 1.31517 * 119.99498 * 181.40280 * 15 13 11 17 17 Si 1.86799 * 120.00347 * 1.40222 * 15 13 11 18 18 H 1.48496 * 109.47059 * 267.09616 * 17 15 13 19 19 H 1.48498 * 109.46945 * 27.10055 * 17 15 13 20 20 H 1.48502 * 109.46861 * 147.09689 * 17 15 13 21 21 C 1.50699 * 109.46966 * 173.80520 * 11 10 8 22 22 C 1.38237 * 120.00135 * 66.64777 * 21 11 10 23 23 C 1.38238 * 119.99736 * 179.81082 * 22 21 11 24 24 C 1.38232 * 120.00406 * 0.39259 * 23 22 21 25 25 C 1.38239 * 119.99545 * 359.86027 * 24 23 22 26 26 C 1.38229 * 120.00171 * 359.95262 * 25 24 23 27 27 H 1.08996 * 109.47250 * 59.99576 * 1 2 3 28 28 H 1.08994 * 109.47437 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47231 * 300.00043 * 1 2 3 30 30 H 1.08995 * 109.46906 * 240.00486 * 2 1 3 31 31 H 1.08998 * 109.46632 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47535 * 300.00250 * 3 2 1 33 33 H 1.09004 * 109.46799 * 60.00273 * 3 2 1 34 34 H 1.08996 * 109.47168 * 179.97438 * 5 4 2 35 35 H 1.09005 * 109.46808 * 299.99824 * 5 4 2 36 36 H 1.08996 * 109.47141 * 59.99474 * 5 4 2 37 37 H 1.09004 * 109.47001 * 300.00141 * 6 4 2 38 38 H 1.08999 * 109.46581 * 60.00175 * 6 4 2 39 39 H 1.08996 * 109.47186 * 180.02562 * 6 4 2 40 40 H 0.96995 * 119.99336 * 0.02562 * 7 4 2 41 41 H 1.09004 * 109.46905 * 59.99256 * 10 8 7 42 42 H 1.09003 * 109.46623 * 300.00340 * 10 8 7 43 43 H 0.96996 * 119.99967 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.00352 * 359.97438 * 22 21 11 45 45 H 1.08008 * 119.99812 * 180.22764 * 23 22 21 46 46 H 1.07995 * 120.00043 * 179.83073 * 24 23 22 47 47 H 1.08003 * 119.99758 * 179.97438 * 25 24 23 48 48 H 1.08004 * 119.99873 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.4299 -0.0763 2.4953 6 6 3.5649 -0.6133 1.3136 7 7 1.6524 -2.1329 1.1905 8 6 1.9964 -2.9682 2.1906 9 8 2.6272 -2.5515 3.1389 10 6 1.5983 -4.4205 2.1300 11 6 2.1081 -5.1417 3.3792 12 1 1.7620 -4.6159 4.2691 13 6 3.6149 -5.1669 3.3648 14 1 4.1444 -5.2671 2.4289 15 6 4.3174 -5.0621 4.5466 16 7 5.6324 -5.0564 4.5315 17 14 3.4013 -4.9284 6.1690 18 1 3.2130 -3.4965 6.5145 19 1 2.0758 -5.5862 6.0447 20 1 4.1871 -5.5962 7.2376 21 6 1.5822 -6.5539 3.3937 22 6 2.0014 -7.4574 2.4352 23 6 1.5219 -8.7539 2.4510 24 6 0.6171 -9.1446 3.4203 25 6 0.1940 -8.2395 4.3756 26 6 0.6763 -6.9441 4.3622 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.7929 -0.5905 3.3852 35 1 1.7184 0.9740 2.5390 36 1 0.3437 -0.1532 2.4494 37 1 3.9995 -1.0728 0.4258 38 1 3.8531 0.4370 1.3573 39 1 3.9282 -1.1275 2.2033 40 1 1.1489 -2.4663 0.4315 41 1 2.0328 -4.8796 1.2420 42 1 0.5119 -4.4977 2.0841 43 1 6.1267 -4.9823 5.3628 44 1 2.7055 -7.1513 1.6757 45 1 1.8522 -9.4609 1.7043 46 1 0.2405 -10.1566 3.4309 47 1 -0.5133 -8.5445 5.1327 48 1 0.3460 -6.2371 5.1089 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568579776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:56 Heat of formation + Delta-G solvation = -47.766666 kcal Electronic energy + Delta-G solvation = -25796.166684 eV Core-core repulsion = 22428.546360 eV Total energy + Delta-G solvation = -3367.620325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.21310 -40.02750 -38.45673 -35.80497 -34.09096 -33.65654 -31.67802 -31.56322 -30.15582 -28.82307 -27.83999 -27.17092 -24.68203 -23.81888 -23.25198 -21.53936 -20.59620 -19.80160 -18.98626 -18.12319 -17.39452 -16.80509 -16.48061 -16.04648 -15.66072 -15.53278 -15.35940 -15.11525 -14.85096 -14.46516 -14.35821 -14.15360 -13.90769 -13.85509 -13.55340 -13.42504 -13.23262 -12.99101 -12.96388 -12.71435 -12.53635 -12.46640 -12.15797 -12.04533 -11.90776 -11.83988 -11.75742 -11.51228 -11.46250 -11.32149 -11.01481 -10.64882 -10.18427 -9.81887 -9.60543 -9.28237 -8.20430 -6.16622 0.69283 0.74383 1.31920 1.36947 1.42070 2.04880 2.42272 2.45175 3.09965 3.26035 3.71396 3.93832 4.08994 4.13117 4.17239 4.31697 4.33350 4.34630 4.44468 4.47823 4.50720 4.61984 4.67781 4.77818 4.80475 4.87352 4.88723 4.89149 4.96577 5.00972 5.06550 5.08904 5.15880 5.19214 5.22303 5.29666 5.39046 5.39993 5.42526 5.55579 5.61956 5.70554 5.77840 5.84241 5.87523 6.04560 6.34796 6.38500 6.82573 6.90560 7.47456 7.69899 8.96686 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.015298 B = 0.004662 C = 0.004004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.914564 B = 6003.945467 C = 6991.185097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.180 3.820 5 C -0.160 4.160 6 C -0.162 4.162 7 N -0.722 5.722 8 C 0.511 3.489 9 O -0.549 6.549 10 C -0.114 4.114 11 C 0.059 3.941 12 H 0.032 0.968 13 C -0.459 4.459 14 H 0.032 0.968 15 C 0.023 3.977 16 N -0.955 5.955 17 Si 0.920 3.080 18 H -0.292 1.292 19 H -0.224 1.224 20 H -0.299 1.299 21 C -0.063 4.063 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.408 0.592 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.256 0.744 44 H 0.107 0.893 45 H 0.138 0.862 46 H 0.146 0.854 47 H 0.140 0.860 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.533 5.110 -10.586 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.205 4.205 4 C 0.094 3.906 5 C -0.218 4.218 6 C -0.220 4.220 7 N -0.377 5.377 8 C 0.298 3.702 9 O -0.426 6.426 10 C -0.154 4.154 11 C 0.040 3.960 12 H 0.050 0.950 13 C -0.497 4.497 14 H 0.051 0.949 15 C -0.172 4.172 16 N -0.596 5.596 17 Si 0.747 3.253 18 H -0.219 1.219 19 H -0.147 1.147 20 H -0.226 1.226 21 C -0.064 4.064 22 C -0.137 4.137 23 C -0.144 4.144 24 C -0.158 4.158 25 C -0.143 4.143 26 C -0.170 4.170 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.244 0.756 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.126 0.874 45 H 0.156 0.844 46 H 0.164 0.836 47 H 0.158 0.842 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.942 5.418 -9.792 18.668 hybrid contribution 0.598 0.036 0.860 1.048 sum -14.344 5.454 -8.933 17.756 Atomic orbital electron populations 1.21914 0.93686 1.02289 1.02588 1.21288 0.97022 0.96926 0.95475 1.21935 1.01266 0.94531 1.02781 1.20297 0.93330 0.80590 0.96360 1.22241 1.01038 1.00778 0.97745 1.22233 0.96291 1.02163 1.01336 1.46094 1.58712 1.09058 1.23801 1.20899 0.78406 0.88741 0.82149 1.90678 1.38934 1.77846 1.35107 1.21596 1.01822 0.91375 1.00615 1.17986 0.94141 0.89095 0.94798 0.94995 1.20776 0.89820 1.46392 0.92682 0.94939 1.25590 0.94976 0.94539 1.02136 1.70034 1.07678 1.54380 1.27556 0.86165 0.81197 0.77646 0.80329 1.21869 1.14703 1.22648 1.20514 0.93622 0.97711 0.94508 1.21006 0.99348 0.94001 0.99314 1.21393 0.97735 0.95581 0.99698 1.21330 0.98715 1.00324 0.95436 1.21335 1.00502 0.92935 0.99500 1.21255 0.98979 0.97567 0.99180 0.91000 0.92439 0.92370 0.90196 0.92585 0.90783 0.92179 0.94410 0.90736 0.91345 0.93154 0.90377 0.94646 0.75588 0.89149 0.88105 0.93493 0.87447 0.84415 0.83611 0.84234 0.87246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.58 71.98 0.62 -1.57 16 2 C -0.09 -1.60 2.32 -10.79 -0.03 -1.62 16 3 C -0.15 -2.34 8.46 71.98 0.61 -1.73 16 4 C 0.18 4.79 0.53 3.60 0.00 4.79 16 5 C -0.16 -4.50 7.67 71.98 0.55 -3.95 16 6 C -0.16 -5.21 7.91 71.98 0.57 -4.64 16 7 N -0.72 -20.66 4.83 -422.91 -2.04 -22.71 16 8 C 0.51 19.94 7.01 87.66 0.61 20.56 16 9 O -0.55 -27.35 11.23 -3.04 -0.03 -27.38 16 10 C -0.11 -4.21 4.96 29.85 0.15 -4.06 16 11 C 0.06 2.72 1.17 -12.29 -0.01 2.70 16 12 H 0.03 1.57 4.94 -2.39 -0.01 1.56 16 13 C -0.46 -26.20 6.87 25.60 0.18 -26.02 16 14 H 0.03 2.04 8.06 -2.91 -0.02 2.02 16 15 C 0.02 1.44 5.47 84.65 0.46 1.90 16 16 N -0.95 -63.31 13.96 21.45 0.30 -63.01 16 17 Si 0.92 48.70 27.00 68.60 1.85 50.56 16 18 H -0.29 -16.01 7.11 99.48 0.71 -15.30 16 19 H -0.22 -10.56 4.72 99.48 0.47 -10.10 16 20 H -0.30 -15.81 7.11 99.48 0.71 -15.11 16 21 C -0.06 -2.59 4.65 -19.87 -0.09 -2.68 16 22 C -0.12 -4.51 8.93 22.27 0.20 -4.31 16 23 C -0.13 -3.92 10.05 22.27 0.22 -3.70 16 24 C -0.14 -3.93 10.05 22.27 0.22 -3.70 16 25 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 26 C -0.15 -5.62 8.70 22.27 0.19 -5.42 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.83 7.18 -2.39 -0.02 0.82 16 29 H 0.06 0.91 6.35 -2.39 -0.02 0.90 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 0.96 6.34 -2.39 -0.02 0.94 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.95 6.57 -2.39 -0.02 0.94 16 34 H 0.04 1.40 6.17 -2.39 -0.01 1.39 16 35 H 0.07 1.79 6.57 -2.38 -0.02 1.77 16 36 H 0.07 1.68 6.34 -2.39 -0.02 1.67 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.11 6.34 -2.39 -0.02 2.10 16 39 H 0.03 1.51 6.16 -2.39 -0.01 1.49 16 40 H 0.41 8.75 7.65 -92.71 -0.71 8.04 16 41 H 0.09 3.16 8.05 -2.38 -0.02 3.15 16 42 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 44 H 0.11 4.24 7.87 -2.91 -0.02 4.22 16 45 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 46 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 47 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 48 H 0.11 4.00 7.12 -2.91 -0.02 3.98 16 Total: -1.00 -77.05 364.24 4.76 -72.30 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.00 Total: 27.26 kcal Atomic # 6 Polarization: -41.69 SS G_CDS: 4.68 Total: -37.01 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.74 Total: -85.72 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.03 Total: -27.38 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 1.85 Total: 50.56 kcal Total: -77.05 4.76 -72.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568579776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.530 kcal (2) G-P(sol) polarization free energy of solvation -77.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds