Wall clock time and date at job start Tue Mar 31 2020 07:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38141 * 120.02505 * 2 1 4 4 C 1.38265 * 120.05318 * 179.70417 * 3 2 1 5 5 C 1.38267 * 120.11392 * 0.29172 * 4 3 2 6 6 C 1.38147 * 120.05209 * 359.97438 * 5 4 3 7 7 C 1.50709 * 120.02658 * 180.02562 * 6 5 4 8 8 C 1.38727 * 119.94335 * 359.97438 * 6 5 4 9 9 O 1.35906 * 120.05099 * 180.02562 * 8 6 5 10 10 C 1.42903 * 116.99797 * 90.00148 * 9 8 6 11 11 C 1.53001 * 109.46824 * 179.97438 * 10 9 8 12 12 N 1.46502 * 109.47341 * 64.99727 * 11 10 9 13 13 C 1.36935 * 119.99838 * 269.99915 * 12 11 10 14 14 H 1.08004 * 119.99705 * 141.78849 * 13 12 11 15 15 C 1.38820 * 120.00180 * 321.78644 * 13 12 11 16 16 N 1.31616 * 119.99602 * 339.54669 * 15 13 12 17 17 Si 1.86801 * 119.99818 * 159.54961 * 15 13 12 18 18 H 1.48496 * 109.46931 * 90.00020 * 17 15 13 19 19 H 1.48498 * 109.46974 * 210.00052 * 17 15 13 20 20 H 1.48493 * 109.47173 * 329.99850 * 17 15 13 21 21 C 1.46490 * 119.99838 * 90.00230 * 12 11 10 22 22 C 1.54265 * 110.03035 * 242.47742 * 21 12 11 23 23 C 1.54968 * 104.16325 * 217.13498 * 22 21 12 24 24 C 1.54898 * 102.77341 * 37.88903 * 23 22 21 25 25 C 1.53877 * 110.03466 * 125.26383 * 21 12 11 26 26 H 1.09003 * 109.46990 * 89.99976 * 1 2 3 27 27 H 1.09005 * 109.47157 * 209.99962 * 1 2 3 28 28 H 1.08997 * 109.47093 * 330.00036 * 1 2 3 29 29 H 1.07995 * 119.97823 * 359.97380 * 3 2 1 30 30 H 1.08004 * 119.94547 * 180.27491 * 4 3 2 31 31 H 1.08002 * 119.97662 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.46983 * 89.99788 * 7 6 5 33 33 H 1.08995 * 109.46650 * 210.00200 * 7 6 5 34 34 H 1.09000 * 109.46556 * 329.99842 * 7 6 5 35 35 H 1.08996 * 109.47232 * 299.99515 * 10 9 8 36 36 H 1.08997 * 109.47050 * 59.99754 * 10 9 8 37 37 H 1.09001 * 109.47329 * 185.00094 * 11 10 9 38 38 H 1.09003 * 109.47195 * 304.99618 * 11 10 9 39 39 H 0.97007 * 119.99367 * 175.10656 * 16 15 13 40 40 H 1.09000 * 110.02324 * 3.86904 * 21 12 11 41 41 H 1.08999 * 110.48922 * 335.78575 * 22 21 12 42 42 H 1.09007 * 110.48557 * 98.42971 * 22 21 12 43 43 H 1.08997 * 110.72264 * 279.57707 * 23 22 21 44 44 H 1.08992 * 110.92506 * 156.29589 * 23 22 21 45 45 H 1.08998 * 110.48626 * 203.40545 * 24 23 22 46 46 H 1.08997 * 110.59837 * 80.81982 * 24 23 22 47 47 H 1.09005 * 110.02870 * 238.57097 * 25 21 12 48 48 H 1.09000 * 110.02984 * 359.97438 * 25 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5809 1.1967 0.0062 5 6 4.2752 0.0010 0.0063 6 6 3.5886 -1.1977 0.0007 7 6 4.3459 -2.5007 0.0014 8 6 2.2013 -1.2010 -0.0044 9 8 1.5236 -2.3791 -0.0093 10 6 1.1953 -2.9440 1.2616 11 6 0.4391 -4.2580 1.0556 12 7 1.3227 -5.2346 0.4139 13 6 1.3753 -5.3165 -0.9520 14 1 2.3183 -5.4984 -1.4461 15 6 0.2167 -5.1657 -1.7016 16 7 -0.9593 -5.3460 -1.1386 17 14 0.3267 -4.7071 -3.5090 18 1 0.4002 -5.9426 -4.3296 19 1 -0.8762 -3.9269 -3.8958 20 1 1.5433 -3.8873 -3.7386 21 6 2.1499 -6.1234 1.2335 22 6 3.6443 -5.8571 0.9585 23 6 4.2974 -7.2610 1.0204 24 6 3.2295 -8.1651 0.3559 25 6 1.8862 -7.5904 0.8509 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6583 2.1313 -0.0004 30 1 4.1196 2.1328 0.0107 31 1 5.3552 0.0041 0.0107 32 1 4.5239 -2.8169 1.0292 33 1 3.7614 -3.2609 -0.5166 34 1 5.3002 -2.3664 -0.5079 35 1 2.1107 -3.1351 1.8216 36 1 0.5680 -2.2474 1.8177 37 1 0.1114 -4.6438 2.0209 38 1 -0.4294 -4.0817 0.4210 39 1 -1.7699 -5.1718 -1.6423 40 1 1.9311 -5.9680 2.2899 41 1 3.7780 -5.4176 -0.0299 42 1 4.0634 -5.2064 1.7262 43 1 4.4687 -7.5615 2.0541 44 1 5.2283 -7.2826 0.4541 45 1 3.3465 -9.1980 0.6838 46 1 3.2948 -8.1010 -0.7302 47 1 1.5401 -8.1469 1.7219 48 1 1.1424 -7.6409 0.0557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568697313.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:50:44 Heat of formation + Delta-G solvation = -21.186334 kcal Electronic energy + Delta-G solvation = -26590.225079 eV Core-core repulsion = 23223.757364 eV Total energy + Delta-G solvation = -3366.467715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.99906 -39.33796 -38.02540 -35.88145 -34.44512 -33.08944 -31.95404 -30.34482 -29.27986 -28.08793 -27.76297 -27.47982 -25.38135 -22.93741 -22.33941 -21.74940 -21.28220 -20.67202 -18.49771 -18.15916 -17.28650 -16.97896 -16.43120 -16.23752 -15.88190 -15.75438 -15.28785 -14.94955 -14.63145 -14.29219 -14.18082 -14.01993 -13.93559 -13.79668 -13.57480 -13.45312 -13.01858 -12.84131 -12.75578 -12.67754 -12.40488 -12.26898 -12.21408 -12.06636 -11.90903 -11.73675 -11.66254 -11.61839 -11.54964 -11.19400 -11.08651 -10.47570 -10.33310 -9.47602 -9.30030 -8.41127 -7.64445 -5.27151 0.37043 0.43831 1.41140 1.45945 1.54718 2.59110 2.64711 3.18752 3.41646 3.67259 3.91438 3.97249 4.03409 4.08731 4.15008 4.29253 4.40985 4.46971 4.55541 4.57864 4.62856 4.70370 4.72753 4.73605 4.78634 4.79915 4.84224 4.89044 4.95055 4.98575 5.02343 5.02805 5.07268 5.25393 5.28165 5.28287 5.38070 5.42896 5.57289 5.59152 5.63081 5.69840 5.73345 5.76322 5.80225 5.91831 6.02843 6.61384 6.99350 7.33575 8.03551 8.53438 9.27543 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.012780 B = 0.006121 C = 0.005003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.328137 B = 4573.565920 C = 5595.500792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.118 4.118 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.120 4.120 7 C -0.101 4.101 8 C 0.069 3.931 9 O -0.323 6.323 10 C 0.072 3.928 11 C 0.143 3.857 12 N -0.578 5.578 13 C -0.200 4.200 14 H 0.043 0.957 15 C -0.026 4.026 16 N -0.917 5.917 17 Si 0.926 3.074 18 H -0.290 1.290 19 H -0.299 1.299 20 H -0.285 1.285 21 C 0.161 3.839 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.113 4.113 25 C -0.128 4.128 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.088 0.912 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.043 0.957 47 H 0.054 0.946 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.857 8.715 7.157 14.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.127 4.127 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.120 4.120 7 C -0.158 4.158 8 C 0.025 3.975 9 O -0.240 6.240 10 C -0.004 4.004 11 C 0.016 3.984 12 N -0.297 5.297 13 C -0.331 4.331 14 H 0.061 0.939 15 C -0.222 4.222 16 N -0.563 5.563 17 Si 0.757 3.243 18 H -0.218 1.218 19 H -0.225 1.225 20 H -0.211 1.211 21 C 0.054 3.946 22 C -0.164 4.164 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.167 4.167 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.165 0.835 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 9.619 8.533 6.930 14.607 hybrid contribution -0.576 0.179 -1.147 1.296 sum 9.043 8.713 5.783 13.825 Atomic orbital electron populations 1.20641 0.90714 1.02733 1.02045 1.20515 0.97204 0.93107 1.01845 1.21199 0.94856 0.96944 1.00629 1.21446 0.94021 0.98793 0.99899 1.21219 1.00782 0.91080 1.00634 1.20526 0.93085 0.97265 1.01166 1.20622 0.99272 0.93870 1.02022 1.19061 0.90679 0.86333 1.01451 1.86275 1.74187 1.33991 1.29585 1.23398 0.97847 0.95765 0.83411 1.20937 0.94853 0.86310 0.96284 1.43897 1.47637 1.36492 1.01662 1.18615 0.90582 1.41283 0.82607 0.93947 1.25350 0.95709 1.02149 0.98988 1.70118 0.96754 1.51826 1.37593 0.85930 0.76307 0.77512 0.84527 1.21751 1.22537 1.21107 1.21297 0.90879 0.89238 0.93139 1.22741 0.96138 0.96865 1.00679 1.22408 0.97285 0.94486 1.00785 1.22208 0.94789 0.98891 0.99233 1.22453 0.97600 0.96991 0.99681 0.92150 0.93090 0.89288 0.83482 0.82750 0.83667 0.91362 0.92890 0.90514 0.94555 0.94283 0.92961 0.91317 0.94790 0.92628 0.93163 0.92321 0.90414 0.91441 0.91044 0.93855 0.92742 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.20 9.79 71.24 0.70 -2.50 16 2 C -0.13 -4.10 5.89 -19.77 -0.12 -4.22 16 3 C -0.12 -3.01 9.70 22.25 0.22 -2.79 16 4 C -0.12 -2.82 10.04 22.28 0.22 -2.60 16 5 C -0.12 -3.08 9.70 22.26 0.22 -2.87 16 6 C -0.12 -3.97 5.89 -19.77 -0.12 -4.09 16 7 C -0.10 -3.25 9.79 71.24 0.70 -2.56 16 8 C 0.07 2.59 5.67 22.50 0.13 2.71 16 9 O -0.32 -14.20 7.80 -92.49 -0.72 -14.92 16 10 C 0.07 2.90 6.03 71.98 0.43 3.33 16 11 C 0.14 6.53 5.71 86.38 0.49 7.02 16 12 N -0.58 -27.15 2.36 -674.02 -1.59 -28.74 16 13 C -0.20 -10.65 7.26 84.04 0.61 -10.04 16 14 H 0.04 2.36 6.93 -2.91 -0.02 2.34 16 15 C -0.03 -1.46 4.97 84.86 0.42 -1.04 16 16 N -0.92 -53.66 11.45 21.65 0.25 -53.41 16 17 Si 0.93 47.35 29.60 68.60 2.03 49.38 16 18 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 19 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 20 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 21 C 0.16 6.37 3.42 45.72 0.16 6.52 16 22 C -0.12 -4.30 6.43 31.70 0.20 -4.10 16 23 C -0.11 -3.20 6.91 31.92 0.22 -2.98 16 24 C -0.11 -3.71 6.83 31.67 0.22 -3.49 16 25 C -0.13 -5.00 6.24 31.32 0.20 -4.81 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.75 6.31 -2.38 -0.02 1.74 16 28 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 29 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.15 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 2.12 6.82 -2.39 -0.02 2.10 16 34 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.44 7.23 -2.39 -0.02 1.42 16 37 H 0.05 2.21 7.90 -2.39 -0.02 2.19 16 38 H 0.07 3.69 5.53 -2.39 -0.01 3.68 16 39 H 0.24 14.06 8.32 -92.70 -0.77 13.29 16 40 H 0.06 2.06 7.81 -2.39 -0.02 2.04 16 41 H 0.05 2.01 5.93 -2.39 -0.01 1.99 16 42 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 48 H 0.04 1.96 7.17 -2.39 -0.02 1.94 16 Total: -1.00 -63.63 376.38 5.78 -57.85 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.91 Total: 18.34 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 4.90 Total: -28.49 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -1.34 Total: -82.16 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.72 Total: -14.92 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -63.63 5.78 -57.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568697313.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.666 kcal (2) G-P(sol) polarization free energy of solvation -63.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds