Wall clock time and date at job start Tue Mar 31 2020 08:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46623 * 2 1 4 4 C 1.50696 * 109.46997 * 119.99426 * 2 1 3 5 5 C 1.38261 * 120.00592 * 299.98111 * 4 2 1 6 6 C 1.38213 * 120.00266 * 179.97438 * 5 4 2 7 7 C 1.38259 * 119.99833 * 359.81194 * 6 5 4 8 8 C 1.38208 * 119.99964 * 0.44063 * 7 6 5 9 9 C 1.50706 * 120.00124 * 179.78301 * 8 7 6 10 10 N 1.46497 * 109.47174 * 269.73163 * 9 8 7 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.53011 * 109.46712 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46921 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99765 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00147 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 89.99874 * 21 19 17 23 23 H 1.48499 * 109.47352 * 210.00027 * 21 19 17 24 24 H 1.48501 * 109.46810 * 330.00489 * 21 19 17 25 25 C 1.38221 * 119.99893 * 120.00121 * 4 2 1 26 26 H 1.08996 * 109.47479 * 299.99877 * 1 2 3 27 27 H 1.09000 * 109.47084 * 60.00753 * 1 2 3 28 28 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47479 * 240.00123 * 2 1 3 30 30 H 1.09007 * 109.46991 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47405 * 299.99731 * 3 2 1 32 32 H 1.09000 * 109.47571 * 59.99864 * 3 2 1 33 33 H 1.08001 * 119.99736 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99647 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.99758 * 180.23103 * 7 6 5 36 36 H 1.08995 * 109.46956 * 149.72867 * 9 8 7 37 37 H 1.09001 * 109.46317 * 29.73314 * 9 8 7 38 38 H 0.97000 * 120.00580 * 0.02562 * 10 9 8 39 39 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 40 40 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 41 41 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 42 42 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 44 44 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 45 45 H 1.09003 * 109.46627 * 299.99937 * 16 15 14 46 46 H 1.08992 * 109.47177 * 60.00618 * 16 15 14 47 47 H 0.96999 * 120.00235 * 180.02562 * 20 19 17 48 48 H 1.07994 * 119.99602 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6987 -0.2377 2.4863 6 6 2.1590 -0.8894 3.6148 7 6 2.9498 -2.0164 3.4880 8 6 3.2877 -2.4858 2.2327 9 6 4.1538 -3.7113 2.0944 10 7 5.5623 -3.3113 2.0489 11 6 6.5249 -4.2468 1.9277 12 8 6.2251 -5.4198 1.8559 13 6 7.9736 -3.8348 1.8746 14 6 8.8526 -5.0787 1.7292 15 6 10.3232 -4.6603 1.6747 16 6 11.2022 -5.9043 1.5300 17 6 12.6509 -5.4924 1.4769 18 1 12.9179 -4.4478 1.5405 19 6 13.6354 -6.4490 1.3482 20 7 13.3103 -7.7210 1.2723 21 14 15.4310 -5.9383 1.2817 22 1 15.9880 -5.9069 2.6579 23 1 16.1931 -6.9138 0.4614 24 1 15.5394 -4.5881 0.6730 25 6 2.8270 -1.8341 1.1038 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.0784 0.6409 2.5853 34 1 1.8986 -0.5199 4.5957 35 1 3.3064 -2.5278 4.3698 36 1 3.8954 -4.2369 1.1752 37 1 3.9904 -4.3697 2.9476 38 1 5.8023 -2.3732 2.1067 39 1 8.1329 -3.1756 1.0212 40 1 8.2360 -3.3099 2.7931 41 1 8.6933 -5.7379 2.5826 42 1 8.5902 -5.6036 0.8107 43 1 10.4822 -4.0014 0.8212 44 1 10.5859 -4.1353 2.5931 45 1 11.0432 -6.5629 2.3839 46 1 10.9398 -6.4298 0.6118 47 1 14.0030 -8.3941 1.1821 48 1 3.0875 -2.2033 0.1229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588164481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:41 Heat of formation + Delta-G solvation = -59.336063 kcal Electronic energy + Delta-G solvation = -23061.546459 eV Core-core repulsion = 19693.424448 eV Total energy + Delta-G solvation = -3368.122011 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29431 -39.40691 -36.31836 -34.96357 -34.52291 -32.61299 -31.63527 -30.38310 -29.61885 -27.59180 -26.75474 -25.13727 -23.51645 -22.60409 -22.06692 -20.34855 -19.97713 -19.77735 -17.26602 -16.67382 -16.25766 -16.20968 -15.87684 -15.62775 -15.24072 -14.49009 -14.42601 -14.14919 -14.01528 -14.01310 -13.62749 -13.22799 -12.87329 -12.83683 -12.59364 -12.46067 -12.44417 -12.02783 -11.71008 -11.64176 -11.59832 -11.54903 -11.07679 -11.05394 -10.95908 -10.50795 -10.47985 -10.37718 -9.89057 -9.58109 -9.27850 -9.18174 -9.13480 -9.03065 -8.92338 -8.28138 -5.92879 -3.95337 0.87040 1.00445 2.76358 3.08483 3.35577 3.41491 3.44780 3.56423 4.14519 4.27363 4.43965 4.50917 4.63762 4.73787 4.75067 4.87838 4.95245 5.01535 5.09486 5.17057 5.21930 5.35155 5.37252 5.40098 5.41860 5.43337 5.48956 5.54994 5.64695 5.71391 5.76076 5.78018 5.90692 6.08607 6.17692 6.20299 6.24883 6.30908 6.34943 6.58445 6.60490 6.87805 7.05815 7.23325 7.47052 7.76850 7.93218 8.08765 8.29494 8.50577 9.12397 9.68147 11.18405 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.001816 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.084776 B =15415.947858 C =15800.594818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.078 4.078 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.102 4.102 9 C 0.160 3.840 10 N -0.735 5.735 11 C 0.511 3.489 12 O -0.536 6.536 13 C -0.138 4.138 14 C -0.103 4.103 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.400 0.600 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.260 0.740 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.734 19.432 1.088 34.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.078 4.078 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.124 4.124 8 C -0.103 4.103 9 C 0.037 3.963 10 N -0.388 5.388 11 C 0.299 3.701 12 O -0.411 6.411 13 C -0.178 4.178 14 C -0.141 4.141 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.072 0.928 19 C -0.146 4.146 20 N -0.534 5.534 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.117 4.117 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.873 18.373 1.006 34.238 hybrid contribution 1.071 0.674 0.072 1.267 sum -27.802 19.046 1.079 33.718 Atomic orbital electron populations 1.21859 0.94239 1.02096 1.01954 1.20152 0.96028 0.96154 0.95381 1.21860 1.01397 0.94955 1.01955 1.19871 0.97550 0.95558 0.94802 1.21015 0.99924 0.99842 0.91967 1.21145 0.98107 0.95808 0.98652 1.21112 0.97908 0.96466 0.96901 1.19894 0.99514 0.97336 0.93514 1.20141 0.79819 0.93390 1.02974 1.46166 1.05601 1.10445 1.76603 1.21133 0.88248 0.85671 0.75040 1.90710 1.83753 1.18065 1.48616 1.21794 0.90331 1.01743 1.03938 1.21451 0.94905 0.94927 1.02841 1.21652 0.92480 1.00622 1.00052 1.19104 0.93345 0.92088 0.97249 1.21289 0.91723 0.93007 1.49814 0.92761 1.25044 0.99051 0.94998 0.95512 1.69976 1.32987 0.99930 1.50555 0.86610 0.85243 0.78289 0.77929 1.20728 1.21265 1.19942 1.21025 0.97335 0.95066 0.98318 0.92487 0.92290 0.92476 0.90334 0.92393 0.92287 0.92487 0.86144 0.85907 0.85848 0.90790 0.90757 0.76559 0.89159 0.89162 0.91806 0.91815 0.93486 0.93493 0.96579 0.96570 0.93069 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.01 37.16 0.33 -0.38 16 2 C -0.06 -0.33 3.09 -91.77 -0.28 -0.62 16 3 C -0.14 -0.74 9.01 37.16 0.33 -0.40 16 4 C -0.08 -0.55 4.78 -104.62 -0.50 -1.05 16 5 C -0.11 -0.73 8.71 -39.58 -0.34 -1.07 16 6 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 7 C -0.11 -0.80 9.70 -39.58 -0.38 -1.19 16 8 C -0.10 -0.84 5.25 -104.62 -0.55 -1.39 16 9 C 0.16 1.57 5.80 -5.19 -0.03 1.54 16 10 N -0.73 -7.66 5.55 -61.47 -0.34 -8.00 16 11 C 0.51 7.25 7.83 -10.98 -0.09 7.16 16 12 O -0.54 -9.92 15.98 5.55 0.09 -9.83 16 13 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 14 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.73 13.29 55.43 0.74 -27.00 16 21 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 C -0.10 -0.77 9.33 -39.58 -0.37 -1.14 16 26 H 0.06 0.26 7.39 -51.93 -0.38 -0.12 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.44 7.88 -51.93 -0.41 0.03 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.27 7.39 -51.93 -0.38 -0.11 16 33 H 0.12 0.62 7.10 -52.49 -0.37 0.24 16 34 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 38 H 0.40 3.24 8.46 -40.82 -0.35 2.90 16 39 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.12 0.89 7.95 -52.49 -0.42 0.47 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -33.91 395.25 -10.43 -44.34 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -8.61 Total: -2.73 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -3.24 Total: -19.80 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.40 Total: -35.00 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.91 -10.43 -44.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.999 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds