Wall clock time and date at job start Tue Mar 31 2020 08:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46623 * 2 1 4 4 C 1.50696 * 109.46997 * 119.99426 * 2 1 3 5 5 C 1.38261 * 120.00592 * 299.98111 * 4 2 1 6 6 C 1.38213 * 120.00266 * 179.97438 * 5 4 2 7 7 C 1.38259 * 119.99833 * 359.81194 * 6 5 4 8 8 C 1.38208 * 119.99964 * 0.44063 * 7 6 5 9 9 C 1.50706 * 120.00124 * 179.78301 * 8 7 6 10 10 N 1.46497 * 109.47174 * 269.73163 * 9 8 7 11 11 C 1.34777 * 119.99525 * 179.97438 * 10 9 8 12 12 O 1.21283 * 120.00463 * 0.02562 * 11 10 9 13 13 C 1.50700 * 119.99675 * 179.72583 * 11 10 9 14 14 C 1.53004 * 109.47208 * 180.27843 * 13 11 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 11 16 16 C 1.53011 * 109.46712 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.46921 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99765 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00083 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00147 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00278 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 89.99874 * 21 19 17 23 23 H 1.48499 * 109.47352 * 210.00027 * 21 19 17 24 24 H 1.48501 * 109.46810 * 330.00489 * 21 19 17 25 25 C 1.38221 * 119.99893 * 120.00121 * 4 2 1 26 26 H 1.08996 * 109.47479 * 299.99877 * 1 2 3 27 27 H 1.09000 * 109.47084 * 60.00753 * 1 2 3 28 28 H 1.09001 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47479 * 240.00123 * 2 1 3 30 30 H 1.09007 * 109.46991 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47405 * 299.99731 * 3 2 1 32 32 H 1.09000 * 109.47571 * 59.99864 * 3 2 1 33 33 H 1.08001 * 119.99736 * 359.97438 * 5 4 2 34 34 H 1.08000 * 119.99647 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.99758 * 180.23103 * 7 6 5 36 36 H 1.08995 * 109.46956 * 149.72867 * 9 8 7 37 37 H 1.09001 * 109.46317 * 29.73314 * 9 8 7 38 38 H 0.97000 * 120.00580 * 0.02562 * 10 9 8 39 39 H 1.09009 * 109.47352 * 300.27556 * 13 11 10 40 40 H 1.08998 * 109.47585 * 60.27844 * 13 11 10 41 41 H 1.09000 * 109.46887 * 300.00372 * 14 13 11 42 42 H 1.08998 * 109.46846 * 59.99549 * 14 13 11 43 43 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 44 44 H 1.09001 * 109.47109 * 60.00906 * 15 14 13 45 45 H 1.09003 * 109.46627 * 299.99937 * 16 15 14 46 46 H 1.08992 * 109.47177 * 60.00618 * 16 15 14 47 47 H 0.96999 * 120.00235 * 180.02562 * 20 19 17 48 48 H 1.07994 * 119.99602 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6987 -0.2377 2.4863 6 6 2.1590 -0.8894 3.6148 7 6 2.9498 -2.0164 3.4880 8 6 3.2877 -2.4858 2.2327 9 6 4.1538 -3.7113 2.0944 10 7 5.5623 -3.3113 2.0489 11 6 6.5249 -4.2468 1.9277 12 8 6.2251 -5.4198 1.8559 13 6 7.9736 -3.8348 1.8746 14 6 8.8526 -5.0787 1.7292 15 6 10.3232 -4.6603 1.6747 16 6 11.2022 -5.9043 1.5300 17 6 12.6509 -5.4924 1.4769 18 1 12.9179 -4.4478 1.5405 19 6 13.6354 -6.4490 1.3482 20 7 13.3103 -7.7210 1.2723 21 14 15.4310 -5.9383 1.2817 22 1 15.9880 -5.9069 2.6579 23 1 16.1931 -6.9138 0.4614 24 1 15.5394 -4.5881 0.6730 25 6 2.8270 -1.8341 1.1038 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.0784 0.6409 2.5853 34 1 1.8986 -0.5199 4.5957 35 1 3.3064 -2.5278 4.3698 36 1 3.8954 -4.2369 1.1752 37 1 3.9904 -4.3697 2.9476 38 1 5.8023 -2.3732 2.1067 39 1 8.1329 -3.1756 1.0212 40 1 8.2360 -3.3099 2.7931 41 1 8.6933 -5.7379 2.5826 42 1 8.5902 -5.6036 0.8107 43 1 10.4822 -4.0014 0.8212 44 1 10.5859 -4.1353 2.5931 45 1 11.0432 -6.5629 2.3839 46 1 10.9398 -6.4298 0.6118 47 1 14.0030 -8.3941 1.1821 48 1 3.0875 -2.2033 0.1229 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588164481.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:40 Heat of formation + Delta-G solvation = -77.995695 kcal Electronic energy + Delta-G solvation = -23062.355602 eV Core-core repulsion = 19693.424448 eV Total energy + Delta-G solvation = -3368.931154 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05651 -40.33193 -37.02757 -36.55485 -35.41907 -34.60241 -32.46650 -31.38737 -30.77891 -28.02340 -27.96707 -26.58161 -24.19723 -23.88271 -22.93541 -21.79687 -21.33604 -20.41065 -18.41882 -18.05850 -17.51436 -17.07249 -16.87728 -16.59157 -16.47394 -15.88049 -15.53202 -14.90143 -14.79864 -14.62248 -14.52710 -14.40342 -14.03679 -13.85895 -13.58471 -13.39725 -13.31590 -13.23142 -12.92437 -12.88520 -12.80776 -12.34146 -12.20346 -12.15176 -12.12232 -12.01856 -11.55901 -11.52307 -11.37216 -11.35671 -11.17430 -10.84663 -10.54525 -10.14583 -9.78480 -9.58480 -8.18123 -6.30396 0.28979 0.46032 1.40528 1.42959 1.54036 1.64665 2.23992 2.42487 2.89573 3.14394 3.57681 3.73011 3.87398 3.93965 4.07216 4.13983 4.16035 4.23416 4.32822 4.33173 4.47127 4.56016 4.61492 4.67879 4.70439 4.74227 4.82197 4.85168 4.89359 4.94651 5.00631 5.08961 5.11777 5.20127 5.23410 5.32599 5.33845 5.34670 5.39875 5.42880 5.56436 5.57916 5.63028 5.72173 5.78812 5.88630 6.06815 6.25865 6.54191 6.87990 7.25652 7.39134 8.94039 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.027469 B = 0.001816 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.084776 B =15415.947858 C =15800.594818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.081 4.081 5 C -0.110 4.110 6 C -0.121 4.121 7 C -0.113 4.113 8 C -0.108 4.108 9 C 0.163 3.837 10 N -0.714 5.714 11 C 0.511 3.489 12 O -0.588 6.588 13 C -0.128 4.128 14 C -0.096 4.096 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.542 4.542 18 H 0.066 0.934 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.259 1.259 25 C -0.109 4.109 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.415 0.585 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.061 0.939 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.263 0.737 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.911 22.706 1.439 36.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.081 4.081 5 C -0.128 4.128 6 C -0.139 4.139 7 C -0.132 4.132 8 C -0.108 4.108 9 C 0.040 3.960 10 N -0.367 5.367 11 C 0.300 3.700 12 O -0.468 6.468 13 C -0.167 4.167 14 C -0.134 4.134 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.183 1.183 25 C -0.128 4.128 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.252 0.748 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.071 0.929 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -29.074 21.712 1.364 36.312 hybrid contribution 1.041 -0.346 -0.037 1.098 sum -28.033 21.366 1.328 35.272 Atomic orbital electron populations 1.21846 0.93629 1.01827 1.02657 1.20177 0.96493 0.96394 0.94689 1.21844 1.00923 0.94549 1.02627 1.20055 0.97163 0.95266 0.95644 1.21272 0.99667 1.00224 0.91680 1.21402 0.97463 0.95304 0.99717 1.21242 0.98252 0.96951 0.96735 1.19724 0.99999 0.96953 0.94155 1.20103 0.79578 0.94218 1.02145 1.45985 1.05406 1.10644 1.74653 1.21217 0.89039 0.85269 0.74495 1.90700 1.84471 1.20266 1.51378 1.21673 0.88851 0.99611 1.06578 1.21248 0.94344 0.96847 1.00991 1.21452 0.92784 0.97831 1.01268 1.19070 0.94445 0.94108 0.94335 1.21759 0.92795 0.93712 1.49737 0.91568 1.26102 1.04659 0.94876 0.94825 1.70134 1.34840 1.01359 1.51440 0.85372 0.78413 0.78428 0.78359 1.19705 1.20926 1.18337 1.21109 0.97856 0.95576 0.98224 0.91942 0.91458 0.93222 0.90621 0.93093 0.91515 0.91948 0.84422 0.83983 0.85349 0.91762 0.91544 0.74795 0.86400 0.86357 0.93833 0.93866 0.92076 0.92052 0.99684 0.99682 0.92872 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.01 71.98 0.65 -0.53 16 2 C -0.06 -0.58 3.09 -11.54 -0.04 -0.62 16 3 C -0.14 -1.18 9.01 71.98 0.65 -0.54 16 4 C -0.08 -1.02 4.78 -19.86 -0.09 -1.12 16 5 C -0.11 -1.23 8.71 22.27 0.19 -1.03 16 6 C -0.12 -1.39 10.05 22.27 0.22 -1.16 16 7 C -0.11 -1.57 9.70 22.27 0.22 -1.35 16 8 C -0.11 -1.69 5.25 -19.87 -0.10 -1.80 16 9 C 0.16 3.18 5.80 85.64 0.50 3.67 16 10 N -0.71 -14.07 5.55 -466.79 -2.59 -16.66 16 11 C 0.51 14.20 7.83 87.66 0.69 14.89 16 12 O -0.59 -22.39 15.98 -3.04 -0.05 -22.44 16 13 C -0.13 -3.22 5.70 29.85 0.17 -3.05 16 14 C -0.10 -3.54 4.50 30.59 0.14 -3.40 16 15 C -0.10 -3.97 5.15 30.60 0.16 -3.82 16 16 C 0.02 0.98 4.97 29.85 0.15 1.13 16 17 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 18 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 19 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 20 N -0.94 -59.46 13.29 21.45 0.28 -59.17 16 21 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 25 C -0.11 -1.61 9.33 22.27 0.21 -1.41 16 26 H 0.06 0.45 7.39 -2.39 -0.02 0.43 16 27 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.08 0.78 7.88 -2.39 -0.02 0.76 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.45 7.39 -2.39 -0.02 0.43 16 33 H 0.14 1.02 7.10 -2.91 -0.02 1.00 16 34 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 37 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 38 H 0.42 5.80 8.46 -92.71 -0.78 5.02 16 39 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 42 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 45 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 46 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 47 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 48 H 0.12 1.74 7.95 -2.91 -0.02 1.72 16 Total: -1.00 -75.39 395.25 4.19 -71.19 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.13 Total: 11.56 kcal Atomic # 6 Polarization: -36.05 SS G_CDS: 4.40 Total: -31.66 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.30 Total: -75.83 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.39 4.19 -71.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588164481.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.804 kcal (2) G-P(sol) polarization free energy of solvation -75.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds