Wall clock time and date at job start Tue Mar 31 2020 08:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.47109 * 2 1 4 4 C 1.38233 * 120.00375 * 89.99976 * 3 2 1 5 5 C 1.38228 * 120.00235 * 179.97438 * 4 3 2 6 6 C 1.38234 * 120.00114 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99974 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46743 * 90.00173 * 7 6 5 9 9 C 1.46506 * 120.00098 * 90.00098 * 8 7 6 10 10 C 1.34771 * 120.00308 * 269.99953 * 8 7 6 11 11 O 1.21283 * 120.00089 * 359.97438 * 10 8 7 12 12 C 1.50702 * 120.00335 * 180.02562 * 10 8 7 13 13 C 1.53003 * 109.47196 * 179.97438 * 12 10 8 14 14 C 1.52996 * 109.47022 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47024 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47204 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99685 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00216 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99596 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00033 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47146 * 90.00384 * 20 18 16 22 22 H 1.48505 * 109.47277 * 210.00137 * 20 18 16 23 23 H 1.48502 * 109.47385 * 330.00045 * 20 18 16 24 24 C 1.38232 * 119.99906 * 0.25156 * 6 5 4 25 25 C 1.38234 * 119.99720 * 270.02036 * 3 2 1 26 26 H 1.09000 * 109.47097 * 59.99989 * 1 2 3 27 27 H 1.08989 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46665 * 300.00108 * 1 2 3 29 29 H 1.08999 * 109.47172 * 239.99759 * 2 1 3 30 30 H 1.09000 * 109.47097 * 120.00011 * 2 1 3 31 31 H 1.08008 * 119.99574 * 0.02562 * 4 3 2 32 32 H 1.08006 * 119.99980 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47445 * 330.00507 * 7 6 5 34 34 H 1.09000 * 109.47150 * 210.00116 * 7 6 5 35 35 H 1.09001 * 109.47060 * 270.00243 * 9 8 7 36 36 H 1.09004 * 109.47073 * 29.99732 * 9 8 7 37 37 H 1.09000 * 109.47212 * 149.99814 * 9 8 7 38 38 H 1.09000 * 109.47188 * 299.99755 * 12 10 8 39 39 H 1.08996 * 109.47042 * 59.99980 * 12 10 8 40 40 H 1.09000 * 109.46913 * 299.99998 * 13 12 10 41 41 H 1.09001 * 109.47340 * 59.99709 * 13 12 10 42 42 H 1.09000 * 109.47493 * 299.99911 * 14 13 12 43 43 H 1.09001 * 109.47082 * 59.99818 * 14 13 12 44 44 H 1.08999 * 109.47668 * 300.00146 * 15 14 13 45 45 H 1.09010 * 109.46871 * 60.00451 * 15 14 13 46 46 H 0.97008 * 119.99699 * 179.97438 * 19 18 16 47 47 H 1.07996 * 120.00052 * 179.72643 * 24 6 5 48 48 H 1.08001 * 120.00415 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9544 4.0272 -0.0001 7 6 3.4568 5.4480 -0.0001 8 7 4.9218 5.4479 -0.0001 9 6 5.6543 5.4479 -1.2689 10 6 5.5957 5.4479 1.1670 11 8 4.9894 5.4484 2.2174 12 6 7.1028 5.4484 1.1669 13 6 7.6128 5.4489 2.6094 14 6 9.1428 5.4487 2.6094 15 6 9.6528 5.4498 4.0519 16 6 11.1598 5.4491 4.0518 17 1 11.6998 5.4483 3.1165 18 6 11.8493 5.4493 5.2458 19 7 11.1917 5.4498 6.3848 20 14 13.7172 5.4491 5.2458 21 1 14.2124 6.8491 5.2454 22 1 14.2122 4.7493 6.4585 23 1 14.2121 4.7486 4.0334 24 6 2.7186 3.3775 -1.1972 25 6 2.2623 2.0725 -1.1972 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0832 1.5632 2.1325 32 1 2.9037 3.8849 2.1324 33 1 3.0935 5.9619 0.8899 34 1 3.0934 5.9619 -0.8901 35 1 5.8359 4.4202 -1.5836 36 1 5.0652 5.9618 -2.0286 37 1 6.6067 5.9617 -1.1386 38 1 7.4664 4.5586 0.6529 39 1 7.4658 6.3386 0.6533 40 1 7.2492 6.3389 3.1230 41 1 7.2497 4.5589 3.1235 42 1 9.5060 4.5585 2.0959 43 1 9.5062 6.3385 2.0951 44 1 9.2896 6.3402 4.5651 45 1 9.2894 4.5602 4.5664 46 1 11.6768 5.4496 7.2249 47 1 2.8944 3.8881 -2.1325 48 1 2.0824 1.5634 -2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588252905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:14 Heat of formation + Delta-G solvation = -64.130517 kcal Electronic energy + Delta-G solvation = -23770.125421 eV Core-core repulsion = 20401.795507 eV Total energy + Delta-G solvation = -3368.329914 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19696 -40.12198 -37.03409 -36.52142 -35.06820 -34.57502 -31.99528 -31.83857 -30.90801 -28.14928 -27.74335 -26.38394 -24.39938 -23.65032 -23.42680 -21.79971 -21.46239 -20.04438 -18.44079 -17.87710 -17.54256 -17.16378 -16.63865 -16.48168 -16.35497 -16.20808 -15.53652 -14.76782 -14.63764 -14.56207 -14.50785 -14.24845 -14.19809 -13.72861 -13.63251 -13.57147 -13.43267 -13.22464 -13.01585 -12.81831 -12.71110 -12.60507 -12.33180 -12.15691 -12.12735 -12.05851 -11.78577 -11.67702 -11.39378 -11.34400 -11.14273 -10.76713 -10.55717 -9.83767 -9.72589 -9.46704 -8.19120 -6.31487 0.31883 0.48800 1.39816 1.42457 1.53525 1.65041 2.09823 2.41612 2.88786 3.13369 3.62734 3.79026 3.88218 3.99799 4.01992 4.10924 4.11993 4.15963 4.35303 4.41893 4.48335 4.55933 4.61693 4.63156 4.65061 4.71171 4.74382 4.79959 4.81679 4.86160 5.01533 5.04277 5.06672 5.13578 5.17563 5.19116 5.31412 5.35700 5.35713 5.49783 5.54589 5.56914 5.68875 5.71247 5.76707 5.86972 6.10635 6.24483 6.37886 6.86799 7.20891 7.38031 8.93192 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.002277 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.970608 B =12295.242727 C =13024.741489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.138 4.138 5 C -0.117 4.117 6 C -0.120 4.120 7 C 0.154 3.846 8 N -0.611 5.611 9 C 0.069 3.931 10 C 0.506 3.494 11 O -0.583 6.583 12 C -0.126 4.126 13 C -0.094 4.094 14 C -0.095 4.095 15 C 0.019 3.981 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.259 1.259 24 C -0.099 4.099 25 C -0.125 4.125 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.062 0.938 44 H -0.015 1.015 45 H -0.017 1.017 46 H 0.263 0.737 47 H 0.150 0.850 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.935 -6.089 -24.182 32.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.156 4.156 5 C -0.135 4.135 6 C -0.121 4.121 7 C 0.032 3.968 8 N -0.343 5.343 9 C -0.072 4.072 10 C 0.296 3.704 11 O -0.463 6.463 12 C -0.165 4.165 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.018 4.018 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.183 1.183 24 C -0.117 4.117 25 C -0.143 4.143 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.137 0.863 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.003 0.997 45 H 0.001 0.999 46 H 0.071 0.929 47 H 0.168 0.832 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.229 -6.070 -23.488 32.237 hybrid contribution 0.765 0.030 1.234 1.452 sum -20.465 -6.040 -22.254 30.831 Atomic orbital electron populations 1.21719 0.93965 1.02446 1.01901 1.20604 0.96761 0.91486 1.03460 1.20204 0.98215 0.97139 0.92984 1.21174 1.01025 0.94834 0.98529 1.21195 0.98793 0.95432 0.98118 1.20312 1.00917 0.97424 0.93484 1.20425 0.79507 0.92641 1.04247 1.48029 1.06349 1.72986 1.06971 1.22141 0.98123 1.03082 0.83890 1.21232 0.91202 0.74713 0.83236 1.90665 1.71307 1.51297 1.33012 1.21689 0.90115 1.06126 0.98581 1.21235 0.95496 1.00797 0.95712 1.21442 0.93359 1.01296 0.97120 1.19057 0.95150 0.94233 0.93394 1.21748 0.93026 1.50226 0.92881 0.91503 1.26127 1.04452 0.94802 0.95215 1.70143 1.37780 1.51874 0.98068 0.85355 0.78608 0.78552 0.77962 1.19639 1.20952 1.18271 1.21289 0.98003 0.94842 0.97548 1.21329 0.99900 0.95032 0.98054 0.92236 0.91100 0.93505 0.89642 0.91298 0.86347 0.88254 0.91612 0.86242 0.91868 0.88237 0.89530 0.87110 0.86283 0.93828 0.94332 0.92227 0.91888 0.99703 0.99908 0.92859 0.83185 0.83646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 71.98 0.71 -0.93 16 2 C -0.09 -1.15 6.06 29.85 0.18 -0.97 16 3 C -0.09 -1.55 5.13 -19.87 -0.10 -1.65 16 4 C -0.14 -3.14 9.70 22.27 0.22 -2.92 16 5 C -0.12 -3.02 9.70 22.27 0.22 -2.80 16 6 C -0.12 -2.49 5.46 -19.87 -0.11 -2.60 16 7 C 0.15 2.93 5.58 85.63 0.48 3.41 16 8 N -0.61 -12.37 2.86 -851.11 -2.43 -14.80 16 9 C 0.07 0.75 10.29 127.77 1.31 2.07 16 10 C 0.51 14.70 7.67 87.66 0.67 15.38 16 11 O -0.58 -22.50 15.09 -3.04 -0.05 -22.55 16 12 C -0.13 -3.34 4.25 29.85 0.13 -3.21 16 13 C -0.09 -3.57 4.50 30.59 0.14 -3.43 16 14 C -0.09 -3.98 5.15 30.59 0.16 -3.82 16 15 C 0.02 1.06 4.97 29.85 0.15 1.20 16 16 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 18 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 19 N -0.94 -59.84 13.29 21.45 0.28 -59.55 16 20 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 C -0.10 -1.51 9.70 22.27 0.22 -1.29 16 25 C -0.13 -1.91 9.70 22.27 0.22 -1.70 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 30 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.10 3.07 7.58 -2.91 -0.02 3.05 16 33 H 0.07 1.59 7.36 -2.39 -0.02 1.57 16 34 H 0.12 1.34 7.84 -2.39 -0.02 1.32 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.53 7.89 -2.38 -0.02 0.51 16 37 H 0.09 0.82 6.44 -2.39 -0.02 0.80 16 38 H 0.11 2.48 8.11 -2.39 -0.02 2.46 16 39 H 0.12 2.48 7.40 -2.39 -0.02 2.46 16 40 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 41 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 46 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 47 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -78.58 394.80 6.01 -72.57 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.90 Total: 11.96 kcal Atomic # 6 Polarization: -40.21 SS G_CDS: 5.28 Total: -34.93 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.15 Total: -74.36 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -78.58 6.01 -72.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588252905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.440 kcal (2) G-P(sol) polarization free energy of solvation -78.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds