Wall clock time and date at job start Tue Mar 31 2020 08:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00241 * 2 1 4 4 O 1.21278 * 120.00371 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99788 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.52991 * 109.47167 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47106 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46887 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00389 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99835 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00025 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99825 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47371 * 89.99719 * 13 11 9 15 15 H 1.48503 * 109.47156 * 210.00068 * 13 11 9 16 16 H 1.48503 * 109.47167 * 329.99716 * 13 11 9 17 17 C 1.46499 * 120.00415 * 180.02562 * 2 1 3 18 18 C 1.53006 * 109.47438 * 237.86121 * 17 2 1 19 19 C 1.52998 * 109.47302 * 117.85892 * 17 2 1 20 20 C 1.50708 * 109.46754 * 357.86141 * 17 2 1 21 21 C 1.38238 * 119.99673 * 277.23294 * 20 17 2 22 22 C 1.38230 * 119.99693 * 179.97438 * 21 20 17 23 23 C 1.38238 * 120.00399 * 359.97438 * 22 21 20 24 24 C 1.38238 * 119.99428 * 0.27832 * 23 22 21 25 25 C 1.38224 * 120.00106 * 97.21582 * 20 17 2 26 26 H 1.09002 * 109.46586 * 264.81081 * 1 2 3 27 27 H 1.08994 * 109.46921 * 24.80973 * 1 2 3 28 28 H 1.08997 * 109.46881 * 144.81557 * 1 2 3 29 29 H 1.09004 * 109.46825 * 299.99986 * 5 3 2 30 30 H 1.08995 * 109.47274 * 59.99551 * 5 3 2 31 31 H 1.08999 * 109.46506 * 299.99690 * 6 5 3 32 32 H 1.08994 * 109.47020 * 59.99522 * 6 5 3 33 33 H 1.09007 * 109.47372 * 299.99907 * 7 6 5 34 34 H 1.09003 * 109.47050 * 59.99547 * 7 6 5 35 35 H 1.08996 * 109.47564 * 300.00037 * 8 7 6 36 36 H 1.09001 * 109.46710 * 60.00108 * 8 7 6 37 37 H 0.96999 * 120.00268 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47121 * 179.97438 * 18 17 2 39 39 H 1.08991 * 109.46906 * 299.99767 * 18 17 2 40 40 H 1.09006 * 109.46694 * 59.99619 * 18 17 2 41 41 H 1.08999 * 109.47426 * 299.99911 * 19 17 2 42 42 H 1.09001 * 109.47370 * 60.00685 * 19 17 2 43 43 H 1.09001 * 109.47152 * 180.02562 * 19 17 2 44 44 H 1.07998 * 119.99795 * 359.97438 * 21 20 17 45 45 H 1.08008 * 120.00015 * 180.02562 * 22 21 20 46 46 H 1.07998 * 120.00151 * 179.97438 * 23 22 21 47 47 H 1.08001 * 119.99420 * 179.72762 * 24 23 22 48 48 H 1.08007 * 120.00340 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6353 -0.0002 7 6 1.6146 4.9602 -0.0002 8 6 2.6088 6.1231 -0.0004 9 6 1.8552 7.4282 -0.0011 10 1 0.7753 7.4282 -0.0018 11 6 2.5446 8.6224 -0.0018 12 7 1.8871 9.7612 -0.0029 13 14 4.4126 8.6224 -0.0027 14 1 4.9070 8.6218 -1.4030 15 1 4.9080 9.8351 0.6967 16 1 4.9080 7.4101 0.6976 17 6 2.1976 -1.2687 -0.0006 18 6 3.1172 -1.3272 1.2209 19 6 3.0363 -1.3727 -1.2759 20 6 1.2191 -2.4137 0.0519 21 6 0.6942 -2.8192 1.2648 22 6 -0.2037 -3.8691 1.3129 23 6 -0.5771 -4.5132 0.1482 24 6 -0.0482 -4.1110 -1.0640 25 6 0.8462 -3.0582 -1.1126 26 1 -0.3632 -0.0930 1.0235 27 1 -0.3633 0.9328 -0.4312 28 1 -0.3633 -0.8399 -0.5921 29 1 0.7584 2.5302 -0.8892 30 1 0.7590 2.5299 0.8907 31 1 3.0068 3.5775 0.8894 32 1 3.0056 3.5775 -0.8906 33 1 0.9875 5.0177 -0.8900 34 1 0.9883 5.0182 0.8900 35 1 3.2356 6.0655 0.8895 36 1 3.2354 6.0653 -0.8904 37 1 2.3720 10.6013 -0.0038 38 1 3.6619 -2.2714 1.2207 39 1 3.8248 -0.4991 1.1829 40 1 2.5195 -1.2531 2.1295 41 1 2.3813 -1.3311 -2.1461 42 1 3.7441 -0.5446 -1.3139 43 1 3.5811 -2.3169 -1.2765 44 1 0.9857 -2.3157 2.1747 45 1 -0.6141 -4.1857 2.2605 46 1 -1.2783 -5.3337 0.1859 47 1 -0.3366 -4.6171 -1.9735 48 1 1.2564 -2.7415 -2.0603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588990333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:23 Heat of formation + Delta-G solvation = -23.857151 kcal Electronic energy + Delta-G solvation = -24652.536838 eV Core-core repulsion = 21285.953307 eV Total energy + Delta-G solvation = -3366.583530 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95871 -39.25798 -36.45661 -34.99553 -33.58402 -32.40565 -31.47267 -30.29454 -29.82851 -27.58250 -26.60517 -25.84841 -23.84417 -22.57622 -22.24460 -20.51219 -19.98601 -18.59498 -17.56783 -16.73666 -16.47621 -16.35692 -16.00681 -15.35318 -14.97149 -14.49079 -14.22742 -14.12945 -13.91217 -13.78731 -13.31771 -13.16316 -12.86827 -12.64117 -12.61607 -12.46147 -12.29843 -12.00599 -11.96053 -11.87454 -11.77791 -11.64813 -11.19866 -11.09139 -10.91499 -10.68708 -10.50018 -9.85458 -9.67694 -9.61534 -9.35579 -9.29605 -9.14468 -9.08333 -8.75463 -8.47718 -5.98915 -3.96180 0.88860 1.02246 2.68948 2.86150 3.36625 3.43526 3.49779 3.50166 4.12961 4.42089 4.51638 4.62206 4.67369 4.73525 4.87621 4.88936 4.94898 5.09830 5.17576 5.22495 5.26450 5.35265 5.38341 5.44932 5.49384 5.51194 5.55238 5.65395 5.66466 5.69588 5.82969 6.00753 6.05276 6.07044 6.10916 6.15189 6.18835 6.30551 6.43529 6.52674 6.59752 6.71485 6.84959 7.01700 7.33370 7.40692 7.53398 7.86689 8.23014 8.60231 9.06233 9.64554 11.14601 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.002423 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.086229 B =11554.116926 C =11906.575217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.516 3.484 4 O -0.532 6.532 5 C -0.138 4.138 6 C -0.105 4.105 7 C -0.102 4.102 8 C -0.015 4.015 9 C -0.519 4.519 10 H 0.071 0.929 11 C 0.064 3.936 12 N -0.906 5.906 13 Si 0.880 3.120 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.215 3.785 18 C -0.163 4.163 19 C -0.163 4.163 20 C -0.084 4.084 21 C -0.104 4.104 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 -32.263 0.047 32.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.348 5.348 3 C 0.306 3.694 4 O -0.408 6.408 5 C -0.177 4.177 6 C -0.143 4.143 7 C -0.140 4.140 8 C -0.053 4.053 9 C -0.557 4.557 10 H 0.089 0.911 11 C -0.137 4.137 12 N -0.546 5.546 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.131 3.869 18 C -0.221 4.221 19 C -0.221 4.221 20 C -0.085 4.085 21 C -0.122 4.122 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.127 4.127 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.034 0.966 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.338 -32.057 0.050 32.349 hybrid contribution 0.687 0.034 0.000 0.687 sum -3.652 -32.023 0.051 32.231 Atomic orbital electron populations 1.21837 0.79691 1.03329 1.01871 1.48145 1.06755 1.05067 1.74791 1.21012 0.88226 0.85159 0.75035 1.90623 1.14073 1.87206 1.48885 1.21820 1.00026 0.91988 1.03910 1.21479 0.97132 0.92880 1.02826 1.21472 0.98637 0.93014 1.00866 1.19575 0.95316 0.94088 0.96284 1.21188 0.95020 0.89022 1.50424 0.91123 1.25048 0.98403 0.95563 0.94649 1.69918 1.35715 0.97389 1.51537 0.86773 0.86356 0.77635 0.78528 1.20329 1.21476 1.18893 1.19168 0.89960 0.80912 0.96828 1.22289 1.00135 1.03579 0.96115 1.22278 1.00477 1.03378 0.95946 1.19817 0.98003 0.97014 0.93635 1.21140 0.96614 0.96869 0.97606 1.21167 0.97964 0.96300 0.98446 1.21205 0.99806 0.99854 0.92735 1.21171 0.97488 0.97265 0.98009 1.21223 0.97396 0.95890 0.98197 0.92723 0.90438 0.91198 0.89130 0.89147 0.91832 0.91846 0.92929 0.92898 0.96637 0.97086 0.92838 0.91900 0.89457 0.92531 0.92401 0.89941 0.91762 0.85807 0.85982 0.86111 0.85985 0.85534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 9.28 59.85 0.56 1.19 16 2 N -0.61 -6.59 2.82 -167.87 -0.47 -7.07 16 3 C 0.52 7.01 7.10 -10.98 -0.08 6.93 16 4 O -0.53 -8.86 12.20 5.56 0.07 -8.79 16 5 C -0.14 -1.80 4.18 -27.88 -0.12 -1.92 16 6 C -0.11 -1.78 4.50 -26.73 -0.12 -1.91 16 7 C -0.10 -2.03 5.15 -26.74 -0.14 -2.17 16 8 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 9 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 10 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 11 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 12 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 13 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 17 C 0.22 2.17 0.90 -132.97 -0.12 2.05 16 18 C -0.16 -1.72 7.85 37.16 0.29 -1.43 16 19 C -0.16 -1.67 7.51 37.16 0.28 -1.39 16 20 C -0.08 -0.72 3.05 -104.62 -0.32 -1.04 16 21 C -0.10 -0.82 8.79 -39.58 -0.35 -1.16 16 22 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 23 C -0.12 -0.76 10.05 -39.58 -0.40 -1.15 16 24 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 25 C -0.11 -0.84 8.51 -39.59 -0.34 -1.18 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.58 6.26 -51.93 -0.32 0.26 16 28 H 0.07 0.55 6.28 -51.93 -0.33 0.22 16 29 H 0.09 1.04 7.42 -51.93 -0.39 0.66 16 30 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 31 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 32 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 36 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.15 6.01 -51.93 -0.31 0.83 16 40 H 0.06 0.55 6.54 -51.93 -0.34 0.22 16 41 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 42 H 0.08 1.05 6.32 -51.93 -0.33 0.72 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.12 0.93 6.40 -52.49 -0.34 0.59 16 45 H 0.12 0.62 8.06 -52.48 -0.42 0.19 16 46 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 48 H 0.13 0.90 6.01 -52.48 -0.32 0.58 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -33.33 371.46 -8.90 -42.23 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.01 Total: -2.26 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -2.19 Total: -19.78 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.30 Total: -34.83 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.79 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.33 -8.90 -42.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588990333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.372 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds