Wall clock time and date at job start Tue Mar 31 2020 08:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34775 * 120.00241 * 2 1 4 4 O 1.21278 * 120.00371 * 180.02562 * 3 2 1 5 5 C 1.50707 * 119.99788 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47302 * 180.02562 * 5 3 2 7 7 C 1.52991 * 109.47167 * 179.97438 * 6 5 3 8 8 C 1.53000 * 109.47106 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46887 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00389 * 359.97438 * 9 8 7 11 11 C 1.37883 * 119.99835 * 180.02562 * 9 8 7 12 12 N 1.31508 * 120.00025 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 119.99825 * 0.02562 * 11 9 8 14 14 H 1.48502 * 109.47371 * 89.99719 * 13 11 9 15 15 H 1.48503 * 109.47156 * 210.00068 * 13 11 9 16 16 H 1.48503 * 109.47167 * 329.99716 * 13 11 9 17 17 C 1.46499 * 120.00415 * 180.02562 * 2 1 3 18 18 C 1.53006 * 109.47438 * 237.86121 * 17 2 1 19 19 C 1.52998 * 109.47302 * 117.85892 * 17 2 1 20 20 C 1.50708 * 109.46754 * 357.86141 * 17 2 1 21 21 C 1.38238 * 119.99673 * 277.23294 * 20 17 2 22 22 C 1.38230 * 119.99693 * 179.97438 * 21 20 17 23 23 C 1.38238 * 120.00399 * 359.97438 * 22 21 20 24 24 C 1.38238 * 119.99428 * 0.27832 * 23 22 21 25 25 C 1.38224 * 120.00106 * 97.21582 * 20 17 2 26 26 H 1.09002 * 109.46586 * 264.81081 * 1 2 3 27 27 H 1.08994 * 109.46921 * 24.80973 * 1 2 3 28 28 H 1.08997 * 109.46881 * 144.81557 * 1 2 3 29 29 H 1.09004 * 109.46825 * 299.99986 * 5 3 2 30 30 H 1.08995 * 109.47274 * 59.99551 * 5 3 2 31 31 H 1.08999 * 109.46506 * 299.99690 * 6 5 3 32 32 H 1.08994 * 109.47020 * 59.99522 * 6 5 3 33 33 H 1.09007 * 109.47372 * 299.99907 * 7 6 5 34 34 H 1.09003 * 109.47050 * 59.99547 * 7 6 5 35 35 H 1.08996 * 109.47564 * 300.00037 * 8 7 6 36 36 H 1.09001 * 109.46710 * 60.00108 * 8 7 6 37 37 H 0.96999 * 120.00268 * 180.02562 * 12 11 9 38 38 H 1.09001 * 109.47121 * 179.97438 * 18 17 2 39 39 H 1.08991 * 109.46906 * 299.99767 * 18 17 2 40 40 H 1.09006 * 109.46694 * 59.99619 * 18 17 2 41 41 H 1.08999 * 109.47426 * 299.99911 * 19 17 2 42 42 H 1.09001 * 109.47370 * 60.00685 * 19 17 2 43 43 H 1.09001 * 109.47152 * 180.02562 * 19 17 2 44 44 H 1.07998 * 119.99795 * 359.97438 * 21 20 17 45 45 H 1.08008 * 120.00015 * 180.02562 * 22 21 20 46 46 H 1.07998 * 120.00151 * 179.97438 * 23 22 21 47 47 H 1.08001 * 119.99420 * 179.72762 * 24 23 22 48 48 H 1.08007 * 120.00340 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6353 -0.0002 7 6 1.6146 4.9602 -0.0002 8 6 2.6088 6.1231 -0.0004 9 6 1.8552 7.4282 -0.0011 10 1 0.7753 7.4282 -0.0018 11 6 2.5446 8.6224 -0.0018 12 7 1.8871 9.7612 -0.0029 13 14 4.4126 8.6224 -0.0027 14 1 4.9070 8.6218 -1.4030 15 1 4.9080 9.8351 0.6967 16 1 4.9080 7.4101 0.6976 17 6 2.1976 -1.2687 -0.0006 18 6 3.1172 -1.3272 1.2209 19 6 3.0363 -1.3727 -1.2759 20 6 1.2191 -2.4137 0.0519 21 6 0.6942 -2.8192 1.2648 22 6 -0.2037 -3.8691 1.3129 23 6 -0.5771 -4.5132 0.1482 24 6 -0.0482 -4.1110 -1.0640 25 6 0.8462 -3.0582 -1.1126 26 1 -0.3632 -0.0930 1.0235 27 1 -0.3633 0.9328 -0.4312 28 1 -0.3633 -0.8399 -0.5921 29 1 0.7584 2.5302 -0.8892 30 1 0.7590 2.5299 0.8907 31 1 3.0068 3.5775 0.8894 32 1 3.0056 3.5775 -0.8906 33 1 0.9875 5.0177 -0.8900 34 1 0.9883 5.0182 0.8900 35 1 3.2356 6.0655 0.8895 36 1 3.2354 6.0653 -0.8904 37 1 2.3720 10.6013 -0.0038 38 1 3.6619 -2.2714 1.2207 39 1 3.8248 -0.4991 1.1829 40 1 2.5195 -1.2531 2.1295 41 1 2.3813 -1.3311 -2.1461 42 1 3.7441 -0.5446 -1.3139 43 1 3.5811 -2.3169 -1.2765 44 1 0.9857 -2.3157 2.1747 45 1 -0.6141 -4.1857 2.2605 46 1 -1.2783 -5.3337 0.1859 47 1 -0.3366 -4.6171 -1.9735 48 1 1.2564 -2.7415 -2.0603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588990333.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:30:22 Heat of formation + Delta-G solvation = -41.636319 kcal Electronic energy + Delta-G solvation = -24653.307800 eV Core-core repulsion = 21285.953307 eV Total energy + Delta-G solvation = -3367.354493 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76568 -40.02168 -37.35639 -36.54777 -34.80859 -34.13229 -32.00083 -31.67125 -30.73830 -28.36849 -27.84316 -27.05463 -24.76014 -23.63814 -23.10170 -21.84547 -21.30168 -19.51948 -18.85354 -18.21518 -17.40747 -17.19953 -17.04843 -16.32864 -16.08965 -15.67260 -15.56262 -15.06072 -14.75570 -14.62101 -14.52474 -14.30092 -13.82558 -13.78695 -13.70752 -13.56929 -13.47735 -13.21969 -12.97916 -12.96977 -12.76289 -12.53098 -12.51078 -12.26254 -12.04704 -11.84439 -11.75112 -11.56995 -11.46628 -11.33846 -11.25282 -10.76069 -10.49002 -9.82216 -9.73401 -9.59089 -8.29678 -6.32600 0.33964 0.50987 1.34596 1.36040 1.49022 1.67089 2.05194 2.35849 2.94501 3.05620 3.39845 3.78460 3.79324 4.01795 4.03224 4.12708 4.15279 4.24478 4.25491 4.31598 4.57481 4.59721 4.60837 4.61537 4.67791 4.70836 4.72529 4.74550 4.82712 4.84195 4.87434 4.95882 5.06979 5.14627 5.16850 5.18566 5.22342 5.26603 5.28260 5.54496 5.59979 5.64669 5.65736 5.68451 5.69523 5.72188 6.09584 6.29633 6.43858 6.75215 7.24030 7.32083 8.86893 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.032969 B = 0.002423 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.086229 B =11554.116926 C =11906.575217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.605 5.605 3 C 0.512 3.488 4 O -0.570 6.570 5 C -0.131 4.131 6 C -0.094 4.094 7 C -0.093 4.093 8 C -0.016 4.016 9 C -0.530 4.530 10 H 0.037 0.963 11 C 0.003 3.997 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.253 1.253 17 C 0.213 3.787 18 C -0.159 4.159 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.116 4.116 26 H 0.064 0.936 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.521 -34.811 -0.031 35.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.339 5.339 3 C 0.302 3.698 4 O -0.450 6.450 5 C -0.170 4.170 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.054 4.054 9 C -0.568 4.568 10 H 0.055 0.945 11 C -0.194 4.194 12 N -0.591 5.591 13 Si 0.771 3.229 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.176 1.176 17 C 0.129 3.871 18 C -0.217 4.217 19 C -0.216 4.216 20 C -0.092 4.092 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.135 4.135 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.141 0.859 45 H 0.157 0.843 46 H 0.160 0.840 47 H 0.158 0.842 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.877 -34.640 -0.028 34.981 hybrid contribution 0.725 0.776 0.029 1.062 sum -4.152 -33.864 0.001 34.117 Atomic orbital electron populations 1.22021 0.77959 1.04281 1.02821 1.48169 1.07836 1.04587 1.73264 1.21059 0.87769 0.86039 0.74942 1.90622 1.15647 1.87789 1.50903 1.21723 0.99189 0.90228 1.05877 1.21259 0.97385 0.92876 1.01729 1.21332 0.97761 0.92744 1.01232 1.19570 0.95980 0.93765 0.96060 1.21539 0.93966 0.91325 1.49933 0.94482 1.25999 1.03919 0.95119 0.94320 1.70057 1.37954 0.98218 1.52888 0.85694 0.79769 0.78234 0.79184 1.19209 1.20702 1.17637 1.19203 0.90364 0.81266 0.96267 1.22220 0.99826 1.02832 0.96796 1.22215 1.00138 1.02707 0.96543 1.19644 0.98369 0.96856 0.94381 1.21199 0.97097 0.97456 0.97292 1.21407 0.97492 0.95790 0.99514 1.21517 0.99677 1.00062 0.92393 1.21426 0.96911 0.96836 0.99028 1.21312 0.97829 0.96332 0.97991 0.91718 0.89386 0.90395 0.87055 0.87217 0.93039 0.92931 0.92524 0.92586 0.96829 0.96921 0.92516 0.90928 0.92335 0.92015 0.91616 0.92820 0.90660 0.85919 0.84315 0.84020 0.84188 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 9.28 127.77 1.19 2.20 16 2 N -0.61 -12.28 2.82 -803.41 -2.27 -14.55 16 3 C 0.51 13.56 7.10 87.66 0.62 14.18 16 4 O -0.57 -19.32 12.20 -3.02 -0.04 -19.35 16 5 C -0.13 -3.20 4.18 29.85 0.12 -3.07 16 6 C -0.09 -3.13 4.50 30.59 0.14 -2.99 16 7 C -0.09 -3.64 5.15 30.59 0.16 -3.48 16 8 C -0.02 -0.80 4.04 29.85 0.12 -0.68 16 9 C -0.53 -31.48 9.66 25.60 0.25 -31.23 16 10 H 0.04 2.38 7.99 -2.91 -0.02 2.35 16 11 C 0.00 0.18 5.47 84.66 0.46 0.65 16 12 N -0.95 -60.87 13.96 21.45 0.30 -60.57 16 13 Si 0.95 46.35 27.47 68.60 1.88 48.23 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 17 C 0.21 4.11 0.90 2.86 0.00 4.11 16 18 C -0.16 -3.33 7.85 71.98 0.57 -2.76 16 19 C -0.16 -3.18 7.51 71.98 0.54 -2.64 16 20 C -0.09 -1.41 3.05 -19.87 -0.06 -1.47 16 21 C -0.11 -1.54 8.79 22.27 0.20 -1.35 16 22 C -0.12 -1.36 10.05 22.27 0.22 -1.13 16 23 C -0.12 -1.16 10.05 22.27 0.22 -0.93 16 24 C -0.12 -1.32 10.05 22.27 0.22 -1.10 16 25 C -0.12 -1.55 8.51 22.27 0.19 -1.36 16 26 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 1.08 6.26 -2.39 -0.01 1.06 16 28 H 0.08 1.02 6.28 -2.39 -0.02 1.01 16 29 H 0.11 2.28 7.42 -2.38 -0.02 2.26 16 30 H 0.11 2.28 8.11 -2.39 -0.02 2.26 16 31 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 32 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 33 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 36 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 37 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.06 1.59 6.01 -2.39 -0.01 1.57 16 40 H 0.06 1.18 6.54 -2.38 -0.02 1.17 16 41 H 0.06 1.18 6.62 -2.39 -0.02 1.16 16 42 H 0.05 1.41 6.32 -2.39 -0.02 1.39 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.12 1.66 6.40 -2.91 -0.02 1.64 16 45 H 0.14 1.00 8.06 -2.91 -0.02 0.97 16 46 H 0.14 0.76 8.06 -2.91 -0.02 0.74 16 47 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 48 H 0.13 1.60 6.01 -2.91 -0.02 1.58 16 Total: -1.00 -73.16 371.46 5.91 -67.25 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.87 Total: 12.06 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 5.16 Total: -33.07 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.97 Total: -75.12 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.88 Total: 48.23 kcal Total: -73.16 5.91 -67.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588990333.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.614 kcal (2) G-P(sol) polarization free energy of solvation -73.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds