Wall clock time and date at job start Tue Mar 31 2020 08:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47237 * 300.00078 * 13 12 11 15 15 C 1.53003 * 109.47108 * 60.00050 * 13 12 11 16 16 C 1.50695 * 109.47227 * 180.02562 * 13 12 11 17 17 H 1.07998 * 120.00152 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00453 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99809 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00490 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47339 * 120.00077 * 20 18 16 23 23 H 1.48495 * 109.47518 * 240.00264 * 20 18 16 24 24 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 25 25 C 1.37958 * 119.84937 * 0.02562 * 24 8 7 26 26 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 28 28 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 29 29 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 30 30 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 31 31 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 32 32 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 33 33 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 35 35 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 37 37 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 39 39 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 40 40 H 1.09006 * 109.47149 * 59.99909 * 14 13 12 41 41 H 1.08996 * 109.47150 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.46941 * 300.00165 * 14 13 12 43 43 H 1.08997 * 109.47050 * 60.00035 * 15 13 12 44 44 H 1.08997 * 109.46729 * 180.02562 * 15 13 12 45 45 H 1.08997 * 109.47195 * 299.99728 * 15 13 12 46 46 H 0.96993 * 120.00086 * 180.02562 * 19 18 16 47 47 H 1.07997 * 120.07575 * 180.02562 * 24 8 7 48 48 H 1.08006 * 119.92205 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 5.0221 9.3000 3.3346 15 6 7.3777 8.4671 3.3353 16 6 6.8720 10.7856 2.6146 17 1 7.0517 11.2952 1.6795 18 6 7.1007 11.4354 3.8089 19 7 6.8814 10.8150 4.9476 20 14 7.7234 13.1965 3.8097 21 1 7.8891 13.6637 2.4099 22 1 6.7446 14.0673 4.5090 23 1 9.0309 13.2590 4.5109 24 6 4.7613 4.8129 1.2092 25 6 4.3019 3.5121 1.2016 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 4.1124 3.0041 -2.1319 36 1 4.9411 5.3199 -2.1420 37 1 5.5508 7.0453 2.0104 38 1 7.1610 8.9303 0.6574 39 1 5.4828 9.5237 0.6577 40 1 4.6587 8.2723 3.3341 41 1 5.1429 9.6418 4.3625 42 1 4.3044 9.9394 2.8206 43 1 8.3381 8.5131 2.8219 44 1 7.4980 8.8091 4.3632 45 1 7.0143 7.4395 3.3349 46 1 7.0420 11.2722 5.7878 47 1 4.9393 5.3185 2.1468 48 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:34 Heat of formation + Delta-G solvation = -47.247488 kcal Electronic energy + Delta-G solvation = -24113.744971 eV Core-core repulsion = 20746.147160 eV Total energy + Delta-G solvation = -3367.597811 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06224 -38.55797 -36.40027 -35.90188 -33.42520 -32.51439 -31.17646 -30.66431 -28.91141 -25.84423 -25.73853 -25.23101 -24.26200 -22.65303 -22.01025 -21.30600 -20.01124 -18.86499 -17.76977 -16.17353 -15.91255 -15.50291 -15.36481 -14.88491 -14.76878 -14.51458 -14.38227 -14.33821 -13.64789 -13.30828 -13.14695 -13.06797 -12.91295 -12.77215 -12.48684 -12.18452 -11.86420 -11.65126 -11.48323 -11.37529 -11.22476 -11.10392 -10.99440 -10.88384 -10.83728 -10.66734 -10.40027 -10.20982 -9.64747 -9.63314 -9.27122 -9.05179 -8.81557 -8.79069 -8.44568 -8.29614 -6.02855 -4.12679 0.86920 1.31752 3.07860 3.26945 3.35549 3.40143 3.71753 3.95288 4.38294 4.40209 4.53801 4.71456 4.73696 4.87162 4.88241 5.00019 5.14643 5.24000 5.29503 5.34078 5.35764 5.37927 5.47790 5.59750 5.64878 5.79118 5.81578 5.89970 5.94190 6.02087 6.19254 6.26222 6.32138 6.39503 6.44895 6.50265 6.76851 6.80767 6.82282 6.93633 7.00963 7.01461 7.34392 7.54573 7.68985 7.99829 8.03663 8.14630 8.37627 8.67408 8.88271 9.53116 10.98687 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.002427 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.677723 B =11535.458576 C =12051.304051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.083 4.083 5 C -0.065 4.065 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.130 4.130 9 C 0.545 3.455 10 O -0.550 6.550 11 N -0.710 5.710 12 C 0.131 3.869 13 C 0.055 3.945 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.504 4.504 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.083 4.083 25 C -0.125 4.125 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.397 0.603 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.005 0.995 41 H 0.086 0.914 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.086 0.914 45 H 0.005 0.995 46 H 0.259 0.741 47 H 0.128 0.872 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 -20.862 -6.431 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.120 4.120 5 C -0.066 4.066 6 C -0.146 4.146 7 C -0.080 4.080 8 C -0.133 4.133 9 C 0.332 3.668 10 O -0.430 6.430 11 N -0.361 5.361 12 C 0.009 3.991 13 C 0.054 3.946 14 C -0.189 4.189 15 C -0.189 4.189 16 C -0.543 4.543 17 H 0.077 0.923 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.102 4.102 25 C -0.143 4.143 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.234 0.766 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.024 0.976 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.105 0.895 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.145 0.855 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.700 -20.367 -6.957 23.215 hybrid contribution 0.287 0.806 0.528 1.005 sum -8.413 -19.562 -6.429 22.243 Atomic orbital electron populations 1.21778 0.95854 1.01534 1.01963 1.21549 0.95932 0.96767 1.02006 1.21617 0.94159 0.96809 1.02711 1.20668 0.95777 0.92489 1.03050 1.20058 0.97236 0.96059 0.93200 1.20983 1.01165 0.94777 0.97672 1.21268 0.94923 0.93882 0.97882 1.20149 1.03954 0.94879 0.94297 1.18303 0.78326 0.85748 0.84439 1.90728 1.53114 1.67800 1.31379 1.46263 1.65763 1.16374 1.07663 1.21762 0.97924 0.78746 1.00705 1.18376 0.93159 0.95230 0.87831 1.21838 0.96746 0.95983 1.04314 1.21834 0.97925 0.94806 1.04305 1.21015 1.43929 0.96620 0.92696 0.92340 1.24891 0.95214 0.97976 0.95537 1.69812 1.48954 1.36525 0.97178 0.86506 0.78417 0.84751 0.78157 1.19751 1.21076 1.21070 1.21383 0.96735 0.94744 0.97365 1.20957 1.00911 0.94720 0.97739 0.92842 0.92677 0.92721 0.92037 0.91988 0.91649 0.91708 0.90888 0.90834 0.85687 0.84760 0.76645 0.92533 0.92542 0.97600 0.89518 0.95365 0.95362 0.89527 0.97592 0.93063 0.85459 0.85607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.73 5.93 -26.73 -0.16 -0.89 16 3 C -0.12 -0.79 5.20 -26.73 -0.14 -0.93 16 4 C -0.08 -0.59 5.34 -27.88 -0.15 -0.74 16 5 C -0.07 -0.64 5.14 -104.53 -0.54 -1.18 16 6 C -0.13 -1.36 9.68 -39.64 -0.38 -1.74 16 7 C -0.06 -0.81 9.60 -39.19 -0.38 -1.18 16 8 C -0.13 -1.94 5.87 -104.97 -0.62 -2.55 16 9 C 0.55 10.12 7.77 -12.33 -0.10 10.02 16 10 O -0.55 -12.00 16.35 5.32 0.09 -11.91 16 11 N -0.71 -13.16 4.91 -61.25 -0.30 -13.46 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.82 16 13 C 0.05 1.27 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.50 -13.23 8.01 -34.44 -0.28 -13.50 16 17 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.89 -23.57 9.36 55.43 0.52 -23.05 16 20 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.08 -1.05 9.54 -39.18 -0.37 -1.42 16 25 C -0.13 -1.32 9.68 -39.64 -0.38 -1.70 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 34 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.81 7.65 -52.49 -0.40 1.41 16 37 H 0.40 6.62 4.20 -40.82 -0.17 6.44 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 41 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 45 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 46 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 47 H 0.13 1.48 6.41 -52.49 -0.34 1.14 16 48 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 381.47 15.07 5.75 5.75 Total: -1.00 -28.83 381.47 -9.81 -38.64 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -8.13 Total: 4.32 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -2.71 Total: -16.04 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.22 Total: -36.51 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.83 -9.81 -38.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.611 kcal (2) G-P(sol) polarization free energy of solvation -28.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds