Wall clock time and date at job start Tue Mar 31 2020 08:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.52999 * 109.47237 * 179.97438 * 3 2 1 5 5 C 1.50708 * 109.47076 * 180.02562 * 4 3 2 6 6 C 1.38361 * 119.85196 * 270.25154 * 5 4 3 7 7 C 1.37955 * 120.14138 * 180.25817 * 6 5 4 8 8 C 1.39575 * 119.85263 * 359.49245 * 7 6 5 9 9 C 1.47848 * 120.14487 * 180.27853 * 8 7 6 10 10 O 1.21550 * 119.99883 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00150 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00008 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47072 * 179.97438 * 12 11 9 14 14 C 1.53007 * 109.47237 * 300.00078 * 13 12 11 15 15 C 1.53003 * 109.47108 * 60.00050 * 13 12 11 16 16 C 1.50695 * 109.47227 * 180.02562 * 13 12 11 17 17 H 1.07998 * 120.00152 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00453 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99809 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00490 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47339 * 120.00077 * 20 18 16 23 23 H 1.48495 * 109.47518 * 240.00264 * 20 18 16 24 24 C 1.39579 * 119.71401 * 0.25207 * 8 7 6 25 25 C 1.37958 * 119.84937 * 0.02562 * 24 8 7 26 26 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46636 * 299.99806 * 1 2 3 28 28 H 1.08995 * 109.47176 * 60.00085 * 1 2 3 29 29 H 1.09004 * 109.47072 * 240.00028 * 2 1 3 30 30 H 1.09008 * 109.47356 * 120.00057 * 2 1 3 31 31 H 1.09004 * 109.47067 * 60.00025 * 3 2 1 32 32 H 1.08994 * 109.47476 * 300.00173 * 3 2 1 33 33 H 1.08997 * 109.47366 * 60.00289 * 4 3 2 34 34 H 1.09000 * 109.47611 * 300.00081 * 4 3 2 35 35 H 1.07998 * 119.92846 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.07573 * 179.77464 * 7 6 5 37 37 H 0.96996 * 119.99601 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.47252 * 300.00049 * 12 11 9 39 39 H 1.09007 * 109.46893 * 60.00137 * 12 11 9 40 40 H 1.09006 * 109.47149 * 59.99909 * 14 13 12 41 41 H 1.08996 * 109.47150 * 179.97438 * 14 13 12 42 42 H 1.08998 * 109.46941 * 300.00165 * 14 13 12 43 43 H 1.08997 * 109.47050 * 60.00035 * 15 13 12 44 44 H 1.08997 * 109.46729 * 180.02562 * 15 13 12 45 45 H 1.08997 * 109.47195 * 299.99728 * 15 13 12 46 46 H 0.96993 * 120.00086 * 180.02562 * 19 18 16 47 47 H 1.07997 * 120.07575 * 180.02562 * 24 8 7 48 48 H 1.08006 * 119.92205 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8633 0.0013 6 6 4.2975 3.5148 -1.1984 7 6 4.7623 4.8136 -1.2049 8 6 4.9955 5.4741 0.0024 9 6 5.4878 6.8682 0.0031 10 8 5.6909 7.4415 -1.0493 11 7 5.7125 7.5030 1.1706 12 6 6.2008 8.8842 1.1712 13 6 6.3702 9.3646 2.6139 14 6 5.0221 9.3000 3.3346 15 6 7.3777 8.4671 3.3353 16 6 6.8720 10.7856 2.6146 17 1 7.0517 11.2952 1.6795 18 6 7.1007 11.4354 3.8089 19 7 6.8814 10.8150 4.9476 20 14 7.7234 13.1965 3.8097 21 1 7.8891 13.6637 2.4099 22 1 6.7446 14.0673 4.5090 23 1 9.0309 13.2590 4.5109 24 6 4.7613 4.8129 1.2092 25 6 4.3019 3.5121 1.2016 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 4.1124 3.0041 -2.1319 36 1 4.9411 5.3199 -2.1420 37 1 5.5508 7.0453 2.0104 38 1 7.1610 8.9303 0.6574 39 1 5.4828 9.5237 0.6577 40 1 4.6587 8.2723 3.3341 41 1 5.1429 9.6418 4.3625 42 1 4.3044 9.9394 2.8206 43 1 8.3381 8.5131 2.8219 44 1 7.4980 8.8091 4.3632 45 1 7.0143 7.4395 3.3349 46 1 7.0420 11.2722 5.7878 47 1 4.9393 5.3185 2.1468 48 1 4.1206 2.9992 2.1347 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916032.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:34 Heat of formation + Delta-G solvation = -60.465573 kcal Electronic energy + Delta-G solvation = -24114.318150 eV Core-core repulsion = 20746.147160 eV Total energy + Delta-G solvation = -3368.170991 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.28580 -39.74139 -38.12562 -36.55641 -35.11666 -33.44753 -32.64944 -31.83701 -29.72738 -27.58962 -27.51617 -26.91676 -25.28844 -23.56072 -22.97288 -21.86912 -21.22128 -20.65899 -19.12831 -17.83449 -17.14082 -16.70551 -16.36636 -16.31553 -16.25778 -15.70132 -15.50779 -14.93001 -14.81608 -14.64650 -14.60642 -14.37834 -13.96878 -13.71584 -13.61001 -13.40524 -13.20831 -13.12370 -12.72206 -12.58719 -12.58417 -12.27711 -12.24716 -12.15017 -11.99023 -11.83538 -11.60638 -11.51437 -11.34047 -11.33086 -10.95468 -10.71060 -10.41771 -10.08981 -9.95050 -9.62446 -8.03646 -6.19156 -0.14661 0.42155 1.40670 1.44777 1.54292 1.85517 2.24771 2.48028 2.87487 3.19851 3.65523 3.82329 3.88037 4.02134 4.14719 4.21737 4.37018 4.38415 4.41959 4.46307 4.47410 4.63793 4.67237 4.76051 4.87282 4.93952 4.95502 4.98038 5.02400 5.05639 5.08575 5.11823 5.16567 5.21734 5.30845 5.35381 5.35978 5.41075 5.42558 5.53894 5.55443 5.64811 5.65490 5.66363 5.95790 6.12447 6.18750 6.41631 6.59815 6.84442 7.21592 7.48343 8.95673 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.028691 B = 0.002427 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.677723 B =11535.458576 C =12051.304051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.113 4.113 4 C -0.079 4.079 5 C -0.054 4.054 6 C -0.125 4.125 7 C -0.073 4.073 8 C -0.157 4.157 9 C 0.544 3.456 10 O -0.592 6.592 11 N -0.704 5.704 12 C 0.146 3.854 13 C 0.050 3.950 14 C -0.121 4.121 15 C -0.121 4.121 16 C -0.527 4.527 17 H 0.044 0.956 18 C 0.027 3.973 19 N -0.898 5.898 20 Si 0.947 3.053 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.281 1.281 24 C -0.085 4.085 25 C -0.124 4.124 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.408 0.592 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.035 0.965 46 H 0.261 0.739 47 H 0.135 0.865 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.666 -23.513 -5.973 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.054 4.054 6 C -0.143 4.143 7 C -0.092 4.092 8 C -0.160 4.160 9 C 0.333 3.667 10 O -0.475 6.475 11 N -0.355 5.355 12 C 0.022 3.978 13 C 0.050 3.950 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.173 4.173 19 N -0.537 5.537 20 Si 0.773 3.227 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.104 4.104 25 C -0.141 4.141 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.168 0.832 36 H 0.141 0.859 37 H 0.246 0.754 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.070 0.930 47 H 0.153 0.847 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.502 -23.043 -6.478 25.753 hybrid contribution 0.483 1.522 0.357 1.636 sum -9.019 -21.521 -6.121 24.124 Atomic orbital electron populations 1.21798 0.96028 1.01851 1.01688 1.21530 0.95773 0.96105 1.02590 1.21583 0.93845 0.97416 1.02210 1.20730 0.95810 0.90644 1.04463 1.20445 0.95143 0.97217 0.92581 1.21247 1.00082 0.93598 0.99345 1.21318 0.95780 0.95129 0.96975 1.19909 1.06943 0.93046 0.96080 1.18911 0.77181 0.87088 0.83481 1.90694 1.54946 1.69156 1.32697 1.46061 1.65831 1.15141 1.08487 1.21341 0.96748 0.80354 0.99309 1.18377 0.93671 0.94199 0.88772 1.21683 0.96133 0.97567 1.02523 1.21678 0.97418 0.96280 1.02510 1.21271 1.44639 0.98337 0.92319 0.93760 1.25465 0.95471 1.00962 0.95367 1.69907 1.49037 1.37431 0.97340 0.85682 0.78004 0.81174 0.77791 1.20095 1.20677 1.20666 1.21504 0.96653 0.95654 0.96606 1.21294 0.99736 0.93842 0.99276 0.92269 0.92994 0.92997 0.91443 0.91408 0.92172 0.92285 0.89581 0.89428 0.83184 0.85926 0.75392 0.94188 0.94209 0.94585 0.91611 0.96268 0.96254 0.91623 0.94572 0.92972 0.84703 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.91 71.98 0.71 -0.75 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.88 16 3 C -0.11 -1.20 5.20 30.59 0.16 -1.04 16 4 C -0.08 -0.83 5.34 29.85 0.16 -0.67 16 5 C -0.05 -0.88 5.14 -19.80 -0.10 -0.98 16 6 C -0.12 -2.37 9.68 22.23 0.22 -2.15 16 7 C -0.07 -1.91 9.60 22.53 0.22 -1.69 16 8 C -0.16 -4.61 5.87 -20.09 -0.12 -4.72 16 9 C 0.54 20.53 7.77 86.79 0.67 21.20 16 10 O -0.59 -26.82 16.35 -3.87 -0.06 -26.89 16 11 N -0.70 -26.10 4.91 -465.97 -2.29 -28.39 16 12 C 0.15 6.48 4.50 86.38 0.39 6.87 16 13 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 14 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 15 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 16 C -0.53 -28.21 8.01 25.60 0.21 -28.00 16 17 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 18 C 0.03 1.44 5.15 84.65 0.44 1.87 16 19 N -0.90 -47.92 9.36 21.45 0.20 -47.72 16 20 Si 0.95 42.93 29.54 68.60 2.03 44.95 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.09 -1.98 9.54 22.53 0.21 -1.76 16 25 C -0.12 -2.20 9.68 22.23 0.22 -1.98 16 26 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 34 H 0.09 0.74 8.08 -2.39 -0.02 0.72 16 35 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.12 3.41 7.65 -2.91 -0.02 3.38 16 37 H 0.41 13.11 4.20 -92.71 -0.39 12.72 16 38 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.04 1.35 6.86 -2.38 -0.02 1.34 16 41 H 0.07 3.26 6.07 -2.39 -0.01 3.24 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 45 H 0.04 1.35 6.86 -2.39 -0.02 1.34 16 46 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 47 H 0.14 2.82 6.41 -2.91 -0.02 2.80 16 48 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -63.14 381.47 5.11 -58.03 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.54 Total: 22.09 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 4.70 Total: -22.07 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.09 Total: -76.11 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -63.14 5.11 -58.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916032.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.435 kcal (2) G-P(sol) polarization free energy of solvation -63.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds