Wall clock time and date at job start Tue Mar 31 2020 08:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46999 * 2 1 4 4 C 1.53000 * 109.46966 * 120.00235 * 2 1 3 5 5 C 1.50696 * 109.46730 * 174.99879 * 4 2 1 6 6 C 1.38238 * 119.99767 * 90.00546 * 5 4 2 7 7 C 1.38235 * 120.00108 * 179.97438 * 6 5 4 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46897 * 109.46900 * 90.00172 * 9 8 7 11 11 C 1.47848 * 110.99971 * 290.84020 * 10 9 8 12 12 C 1.54905 * 104.79736 * 213.64119 * 11 10 9 13 13 C 1.55145 * 101.65397 * 37.06811 * 12 11 10 14 14 O 1.42895 * 110.70735 * 82.72891 * 13 12 11 15 15 C 1.50699 * 110.85344 * 205.89818 * 13 12 11 16 16 H 1.07997 * 120.00400 * 113.68661 * 15 13 12 17 17 C 1.37873 * 120.00124 * 293.68009 * 15 13 12 18 18 N 1.31515 * 119.99921 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 120.00276 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46836 * 90.00453 * 19 17 15 21 21 H 1.48496 * 109.47406 * 210.00020 * 19 17 15 22 22 H 1.48496 * 109.46969 * 330.00575 * 19 17 15 23 23 C 1.47449 * 110.99981 * 169.99925 * 10 9 8 24 24 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 25 25 C 1.38234 * 120.00185 * 270.01952 * 5 4 2 26 26 H 1.09002 * 109.46965 * 299.99994 * 1 2 3 27 27 H 1.09003 * 109.47387 * 60.00016 * 1 2 3 28 28 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46965 * 240.00006 * 2 1 3 30 30 H 1.08993 * 109.46959 * 300.00367 * 3 2 1 31 31 H 1.09007 * 109.46912 * 60.00505 * 3 2 1 32 32 H 1.09001 * 109.46869 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46955 * 55.00224 * 4 2 1 34 34 H 1.09000 * 109.46884 * 294.99540 * 4 2 1 35 35 H 1.08000 * 120.00559 * 359.97438 * 6 5 4 36 36 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 38 38 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 39 39 H 1.09011 * 110.37055 * 332.46335 * 11 10 9 40 40 H 1.08997 * 110.37491 * 94.80813 * 11 10 9 41 41 H 1.09003 * 110.99395 * 278.97631 * 12 11 10 42 42 H 1.09000 * 111.02758 * 155.17516 * 12 11 10 43 43 H 0.96711 * 113.99528 * 66.40205 * 14 13 12 44 44 H 0.97006 * 120.00441 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.88379 * 242.66308 * 23 10 9 46 46 H 1.08998 * 109.88393 * 3.68305 * 23 10 9 47 47 H 1.08004 * 119.99934 * 179.72684 * 24 8 7 48 48 H 1.07999 * 119.99990 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1888 6 6 4.3291 0.1711 1.7274 7 6 5.7067 0.0718 1.6725 8 6 6.2972 -1.0280 1.0784 9 6 7.7992 -1.1361 1.0180 10 7 8.2888 -1.8287 2.2174 11 6 8.1102 -0.9915 3.4228 12 6 9.3179 -1.3391 4.3284 13 6 10.4504 -1.5222 3.2839 14 8 11.0079 -0.2589 2.9164 15 6 11.5215 -2.4426 3.8098 16 1 11.6825 -3.4045 3.3460 17 6 12.2961 -2.0566 4.8831 18 7 12.0999 -0.8854 5.4482 19 14 13.6234 -3.1977 5.5355 20 1 14.9020 -2.9230 4.8320 21 1 13.8009 -2.9690 6.9920 22 1 13.2226 -4.6082 5.3011 23 6 9.7186 -2.1647 2.0868 24 6 5.5100 -2.0258 0.5347 25 6 4.1323 -1.9290 0.5945 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.1300 1.4425 0.0005 33 1 1.6054 -1.7199 1.2950 34 1 1.7517 -0.1583 2.1369 35 1 3.8678 1.0306 2.1912 36 1 6.3218 0.8537 2.0929 37 1 8.0875 -1.6990 0.1303 38 1 8.2338 -0.1375 0.9723 39 1 8.1273 0.0654 3.1566 40 1 7.1754 -1.2425 3.9240 41 1 9.1406 -2.2634 4.8782 42 1 9.5443 -0.5192 5.0101 43 1 11.4790 0.1868 3.6338 44 1 12.6446 -0.6139 6.2036 45 1 9.8487 -3.2466 2.1098 46 1 10.1096 -1.7641 1.1516 47 1 5.9714 -2.8829 0.0667 48 1 3.5173 -2.7104 0.1731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:04 Heat of formation + Delta-G solvation = -60.051453 kcal Electronic energy + Delta-G solvation = -24799.978935 eV Core-core repulsion = 21431.825902 eV Total energy + Delta-G solvation = -3368.153033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.81445 -39.82644 -37.40182 -36.30865 -34.13494 -33.29757 -31.80887 -31.02674 -29.90906 -28.24139 -27.93065 -26.37504 -24.93314 -23.55922 -22.20208 -21.48996 -21.27994 -20.76505 -19.15664 -17.34572 -16.94375 -16.87990 -16.40525 -16.33564 -15.87495 -15.60294 -15.45392 -15.15474 -14.92746 -14.38118 -14.21880 -14.16636 -13.83691 -13.61066 -13.31628 -13.18757 -13.12846 -13.01050 -12.88855 -12.67607 -12.63752 -12.39707 -12.31963 -12.20567 -12.07507 -11.90425 -11.74334 -11.62824 -11.45970 -11.40200 -11.16614 -10.63888 -10.11930 -9.72618 -9.44431 -9.18253 -8.23162 -6.37926 0.46466 0.58322 1.40211 1.41997 1.51866 2.37905 2.79192 3.01142 3.32470 3.80155 3.87686 3.90918 3.97208 4.08742 4.13519 4.20405 4.23606 4.34106 4.39512 4.44377 4.50171 4.58493 4.63350 4.71717 4.76160 4.81545 4.82029 4.86206 4.91734 4.99990 5.09959 5.10514 5.11254 5.18644 5.24425 5.27595 5.37374 5.46532 5.47057 5.51578 5.51859 5.59089 5.78500 5.79809 5.79934 5.96026 6.15863 6.19303 6.22875 6.66471 7.32649 7.42146 8.82456 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.039463 B = 0.002598 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.362112 B =10774.795852 C =10900.041270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.072 4.072 5 C -0.083 4.083 6 C -0.119 4.119 7 C -0.123 4.123 8 C -0.086 4.086 9 C 0.090 3.910 10 N -0.521 5.521 11 C 0.060 3.940 12 C -0.125 4.125 13 C 0.221 3.779 14 O -0.600 6.600 15 C -0.556 4.556 16 H 0.057 0.943 17 C 0.027 3.973 18 N -0.916 5.916 19 Si 0.962 3.038 20 H -0.276 1.276 21 H -0.280 1.280 22 H -0.270 1.270 23 C 0.064 3.936 24 C -0.107 4.107 25 C -0.123 4.123 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.377 0.623 44 H 0.270 0.730 45 H 0.078 0.922 46 H 0.046 0.954 47 H 0.126 0.874 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 1.905 -9.086 22.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.109 4.109 5 C -0.083 4.083 6 C -0.137 4.137 7 C -0.141 4.141 8 C -0.087 4.087 9 C -0.037 4.037 10 N -0.245 5.245 11 C -0.067 4.067 12 C -0.164 4.164 13 C 0.181 3.819 14 O -0.409 6.409 15 C -0.595 4.595 16 H 0.076 0.924 17 C -0.173 4.173 18 N -0.556 5.556 19 Si 0.788 3.212 20 H -0.202 1.202 21 H -0.206 1.206 22 H -0.195 1.195 23 C -0.064 4.064 24 C -0.126 4.126 25 C -0.140 4.140 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.228 0.772 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.144 0.856 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -21.416 1.407 -9.488 23.466 hybrid contribution 2.019 0.531 1.071 2.346 sum -19.398 1.938 -8.417 21.234 Atomic orbital electron populations 1.21828 0.94046 1.02185 1.02130 1.21053 0.96179 0.96107 0.97340 1.21921 1.00907 0.96090 1.01902 1.20697 0.89492 1.01876 0.98855 1.20074 0.96607 0.94090 0.97558 1.21132 0.92735 0.99367 1.00430 1.21136 0.95595 0.97896 0.99518 1.19725 0.94280 0.95418 0.99256 1.21222 0.91945 0.96962 0.93585 1.63740 1.16644 1.41476 1.02635 1.22895 0.98207 0.94469 0.91138 1.22987 0.95415 0.99928 0.98066 1.19957 0.90190 0.81643 0.90117 1.86063 1.75122 1.36249 1.43494 1.21881 1.18766 1.03412 1.15401 0.92449 1.25729 0.98931 0.96797 0.95863 1.69676 1.40923 1.21042 1.23991 0.85494 0.79105 0.79275 0.77364 1.20218 1.20581 1.19453 1.22730 0.86276 0.99901 0.97493 1.21132 0.94029 0.97940 0.99456 1.21229 0.94244 0.98492 1.00076 0.92332 0.92334 0.92148 0.91684 0.92537 0.92297 0.93418 0.90155 0.90598 0.85006 0.87122 0.89698 0.95198 0.94644 0.90941 0.93104 0.92791 0.77188 0.92098 0.90334 0.93576 0.85563 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 71.98 0.66 -0.88 16 2 C -0.09 -1.20 2.91 -10.79 -0.03 -1.24 16 3 C -0.15 -2.20 8.76 71.98 0.63 -1.57 16 4 C -0.07 -1.08 4.84 29.85 0.14 -0.94 16 5 C -0.08 -1.71 4.71 -19.87 -0.09 -1.81 16 6 C -0.12 -2.73 7.96 22.27 0.18 -2.55 16 7 C -0.12 -3.40 8.93 22.27 0.20 -3.20 16 8 C -0.09 -2.54 5.09 -19.86 -0.10 -2.64 16 9 C 0.09 3.04 4.72 85.56 0.40 3.44 16 10 N -0.52 -20.46 5.15 -890.07 -4.59 -25.05 16 11 C 0.06 2.45 5.60 86.77 0.49 2.94 16 12 C -0.13 -5.99 5.67 31.98 0.18 -5.81 16 13 C 0.22 11.26 0.85 -10.36 -0.01 11.25 16 14 O -0.60 -32.21 13.08 -148.98 -1.95 -34.16 16 15 C -0.56 -30.39 8.22 25.60 0.21 -30.18 16 16 H 0.06 3.11 7.53 -2.91 -0.02 3.08 16 17 C 0.03 1.43 5.28 84.65 0.45 1.87 16 18 N -0.92 -49.70 10.69 21.45 0.23 -49.47 16 19 Si 0.96 42.64 29.54 68.60 2.03 44.67 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 C 0.06 2.83 6.21 86.64 0.54 3.37 16 24 C -0.11 -2.76 9.70 22.27 0.22 -2.55 16 25 C -0.12 -2.66 9.70 22.27 0.22 -2.45 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.05 0.84 6.26 -2.39 -0.01 0.82 16 33 H 0.08 1.07 8.09 -2.39 -0.02 1.05 16 34 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 35 H 0.13 2.54 8.04 -2.91 -0.02 2.52 16 36 H 0.11 3.13 7.49 -2.91 -0.02 3.11 16 37 H 0.08 2.63 7.97 -2.39 -0.02 2.61 16 38 H 0.03 1.07 7.79 -2.39 -0.02 1.06 16 39 H 0.04 1.44 6.99 -2.38 -0.02 1.42 16 40 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.05 2.51 8.05 -2.39 -0.02 2.49 16 42 H 0.05 2.74 7.76 -2.39 -0.02 2.72 16 43 H 0.38 20.84 6.98 -74.05 -0.52 20.32 16 44 H 0.27 13.90 8.31 -92.70 -0.77 13.13 16 45 H 0.08 3.48 7.63 -2.39 -0.02 3.46 16 46 H 0.05 2.02 7.48 -2.39 -0.02 2.00 16 47 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 48 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -58.15 375.73 0.40 -57.75 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: 0.40 Total: 39.20 kcal Atomic # 6 Polarization: -37.21 SS G_CDS: 4.28 Total: -32.93 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -4.36 Total: -74.52 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.95 Total: -34.16 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -58.15 0.40 -57.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.303 kcal (2) G-P(sol) polarization free energy of solvation -58.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds