Wall clock time and date at job start Tue Mar 31 2020 08:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47117 * 2 1 4 4 C 1.53001 * 109.47064 * 119.99522 * 2 1 3 5 5 C 1.50703 * 109.47060 * 65.00341 * 4 2 1 6 6 C 1.38238 * 119.99990 * 89.99536 * 5 4 2 7 7 C 1.38232 * 119.99643 * 179.97438 * 6 5 4 8 8 C 1.38230 * 120.00706 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00662 * 180.02562 * 8 7 6 10 10 N 1.46904 * 109.47037 * 89.99651 * 9 8 7 11 11 C 1.47439 * 111.00045 * 290.12992 * 10 9 8 12 12 C 1.54322 * 107.36952 * 236.65966 * 11 10 9 13 13 C 1.55398 * 102.90031 * 337.89642 * 12 11 10 14 14 O 1.42894 * 110.90261 * 277.37719 * 13 12 11 15 15 C 1.50696 * 111.02695 * 153.63025 * 13 12 11 16 16 H 1.07991 * 120.00591 * 247.60311 * 15 13 12 17 17 C 1.37885 * 119.99573 * 67.60648 * 15 13 12 18 18 N 1.31515 * 119.99698 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99798 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47012 * 60.00381 * 19 17 15 21 21 H 1.48504 * 109.46873 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47355 * 300.00111 * 19 17 15 23 23 C 1.47843 * 110.99640 * 169.28284 * 10 9 8 24 24 C 1.38238 * 119.99695 * 0.27471 * 8 7 6 25 25 C 1.38232 * 120.00068 * 269.97875 * 5 4 2 26 26 H 1.09003 * 109.47501 * 300.00018 * 1 2 3 27 27 H 1.09003 * 109.47334 * 59.99829 * 1 2 3 28 28 H 1.09008 * 109.47257 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47427 * 239.99571 * 2 1 3 30 30 H 1.09001 * 109.47098 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47059 * 299.99843 * 3 2 1 32 32 H 1.09003 * 109.46950 * 59.99644 * 3 2 1 33 33 H 1.08994 * 109.47815 * 305.00397 * 4 2 1 34 34 H 1.08999 * 109.46901 * 184.99639 * 4 2 1 35 35 H 1.07999 * 120.00040 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.99797 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46848 * 330.00053 * 9 8 7 38 38 H 1.08996 * 109.46914 * 209.99969 * 9 8 7 39 39 H 1.09002 * 109.88998 * 356.14887 * 11 10 9 40 40 H 1.09003 * 109.88733 * 117.17548 * 11 10 9 41 41 H 1.09005 * 110.70342 * 96.18020 * 12 11 10 42 42 H 1.08997 * 110.70605 * 219.41644 * 12 11 10 43 43 H 0.96697 * 114.00262 * 292.32457 * 14 13 12 44 44 H 0.97001 * 119.99346 * 179.97438 * 18 17 15 45 45 H 1.08996 * 110.37823 * 265.19398 * 23 10 9 46 46 H 1.09002 * 110.37399 * 27.53914 * 23 10 9 47 47 H 1.07995 * 120.00520 * 179.73021 * 24 8 7 48 48 H 1.08000 * 119.99690 * 359.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 -2.1733 1.1890 6 6 2.4814 -3.0966 0.5951 7 6 2.1160 -4.4286 0.5403 8 6 0.9108 -4.8375 1.0798 9 6 0.5126 -6.2897 1.0206 10 7 1.0034 -6.9813 2.2201 11 6 2.4726 -7.1025 2.1962 12 6 2.8132 -8.6026 2.3197 13 6 1.5347 -9.1960 2.9740 14 8 1.5586 -9.0191 4.3918 15 6 1.3700 -10.6507 2.6170 16 1 0.5515 -10.9624 1.9852 17 6 2.2643 -11.5839 3.0971 18 7 3.2613 -11.2043 3.8661 19 14 2.0597 -13.3873 2.6551 20 1 2.1319 -13.5468 1.1805 21 1 3.1430 -14.1789 3.2917 22 1 0.7421 -13.8698 3.1413 23 6 0.4209 -8.3360 2.3261 24 6 0.0683 -3.9134 1.6691 25 6 0.4357 -2.5820 1.7279 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6443 1.2952 35 1 3.4233 -2.7772 0.1740 36 1 2.7725 -5.1500 0.0767 37 1 0.9469 -6.7496 0.1328 38 1 -0.5737 -6.3670 0.9754 39 1 2.8618 -6.7099 1.2568 40 1 2.9035 -6.5542 3.0340 41 1 2.9816 -9.0417 1.3363 42 1 3.6815 -8.7490 2.9622 43 1 2.2398 -9.5375 4.8414 44 1 3.8902 -11.8608 4.2042 45 1 -0.4642 -8.3199 2.9620 46 1 0.1716 -8.7204 1.3371 47 1 -0.8753 -4.2320 2.0867 48 1 -0.2203 -1.8607 2.1924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:08 Heat of formation + Delta-G solvation = -43.296292 kcal Electronic energy + Delta-G solvation = -24753.990601 eV Core-core repulsion = 21386.564127 eV Total energy + Delta-G solvation = -3367.426475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.70284 -38.22927 -36.44730 -34.67983 -32.11819 -31.96937 -30.81972 -29.55088 -28.07577 -27.38524 -27.01317 -24.76993 -23.59012 -22.59552 -21.00906 -20.10320 -19.79944 -19.47838 -17.08340 -16.13155 -15.68583 -15.26976 -15.02785 -14.89959 -14.74523 -14.46155 -14.36235 -13.88806 -13.58894 -13.29202 -12.91064 -12.63135 -12.54407 -12.43263 -12.30820 -12.01329 -11.91840 -11.67802 -11.38719 -11.23519 -11.20646 -11.00572 -10.94811 -10.90112 -10.75448 -10.73618 -10.47710 -10.45433 -10.21418 -9.83837 -9.22097 -8.73144 -8.59484 -8.37325 -8.02816 -7.55949 -6.21728 -4.29792 1.48108 1.57682 3.23046 3.28176 3.30836 3.85029 4.29068 4.59718 4.64639 4.75232 4.84479 4.97382 5.03612 5.09538 5.14714 5.20255 5.29434 5.39693 5.45101 5.55577 5.61338 5.64783 5.69464 5.70449 5.74680 5.85501 5.87463 5.91355 6.03694 6.08165 6.10118 6.13522 6.19077 6.23656 6.26450 6.50081 6.57515 6.69993 6.72433 6.85908 6.89747 7.08848 7.17052 7.44609 7.47919 7.66456 7.79582 7.84455 8.15255 8.71950 9.39191 9.63704 10.85343 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.041252 B = 0.002572 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.589010 B =10884.409575 C =11025.384772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.074 4.074 5 C -0.088 4.088 6 C -0.120 4.120 7 C -0.111 4.111 8 C -0.066 4.066 9 C 0.085 3.915 10 N -0.520 5.520 11 C 0.046 3.954 12 C -0.148 4.148 13 C 0.254 3.746 14 O -0.581 6.581 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.901 3.099 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.057 3.943 24 C -0.099 4.099 25 C -0.118 4.118 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.118 0.882 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.381 0.619 44 H 0.268 0.732 45 H 0.071 0.929 46 H 0.046 0.954 47 H 0.120 0.880 48 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 19.737 -7.612 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.089 4.089 6 C -0.138 4.138 7 C -0.129 4.129 8 C -0.067 4.067 9 C -0.043 4.043 10 N -0.244 5.244 11 C -0.081 4.081 12 C -0.187 4.187 13 C 0.213 3.787 14 O -0.390 6.390 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.070 4.070 24 C -0.117 4.117 25 C -0.136 4.136 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.233 0.767 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.064 0.936 47 H 0.138 0.862 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.686 20.364 -7.218 21.772 hybrid contribution 0.788 -1.919 -0.835 2.236 sum -1.898 18.445 -8.053 20.216 Atomic orbital electron populations 1.21919 0.95178 1.02361 1.01300 1.21081 0.96161 0.95639 0.98092 1.21856 1.00898 0.96036 1.01687 1.20648 1.00915 0.91456 0.98134 1.19748 0.94922 0.95138 0.99055 1.20918 0.99380 0.92992 1.00466 1.21073 0.96131 0.95658 1.00044 1.19835 0.94371 0.95312 0.97143 1.21206 1.00145 0.90372 0.92592 1.63644 1.06723 1.18972 1.35077 1.22837 0.87714 0.98358 0.99219 1.23334 1.02144 0.92259 1.00978 1.19535 0.88174 0.91458 0.79539 1.86103 1.60996 1.71484 1.20422 1.21552 1.12279 0.92147 1.31517 0.92110 1.25012 0.94384 0.99448 0.94312 1.69583 1.15116 1.34869 1.34125 0.86514 0.77918 0.84066 0.78663 1.20202 1.21118 1.20020 1.23026 0.98951 0.86299 0.98676 1.20998 0.99825 0.92597 0.98323 1.20956 0.96340 0.95758 1.00540 0.92851 0.93081 0.91917 0.91188 0.92746 0.92775 0.92702 0.91206 0.91253 0.86626 0.86435 0.94348 0.90612 0.94436 0.91901 0.92747 0.90851 0.76722 0.92171 0.91035 0.93620 0.86154 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.77 37.15 0.33 -0.88 16 2 C -0.09 -0.74 2.91 -90.62 -0.26 -1.00 16 3 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 4 C -0.07 -0.67 4.84 -27.88 -0.13 -0.80 16 5 C -0.09 -1.02 4.71 -104.62 -0.49 -1.51 16 6 C -0.12 -1.47 9.70 -39.58 -0.38 -1.85 16 7 C -0.11 -1.54 8.74 -39.59 -0.35 -1.89 16 8 C -0.07 -0.98 5.11 -104.62 -0.53 -1.52 16 9 C 0.08 1.39 4.75 -4.97 -0.02 1.36 16 10 N -0.52 -10.36 5.15 -232.68 -1.20 -11.56 16 11 C 0.05 0.94 6.25 -2.84 -0.02 0.92 16 12 C -0.15 -3.46 5.65 -24.77 -0.14 -3.60 16 13 C 0.25 6.40 0.89 -89.49 -0.08 6.32 16 14 O -0.58 -15.70 13.18 -35.23 -0.46 -16.16 16 15 C -0.54 -14.43 8.25 -34.44 -0.28 -14.72 16 16 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 17 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 18 N -0.90 -24.13 10.78 55.43 0.60 -23.53 16 19 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C 0.06 1.27 5.86 -2.29 -0.01 1.25 16 24 C -0.10 -1.35 9.70 -39.58 -0.38 -1.74 16 25 C -0.12 -1.42 7.96 -39.58 -0.32 -1.73 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.57 6.27 -51.92 -0.33 0.25 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.12 1.58 6.91 -52.48 -0.36 1.22 16 37 H 0.04 0.62 7.90 -51.93 -0.41 0.21 16 38 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 39 H 0.04 0.68 5.50 -51.93 -0.29 0.39 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.05 1.28 8.04 -51.93 -0.42 0.86 16 42 H 0.07 1.82 7.84 -51.93 -0.41 1.42 16 43 H 0.38 10.46 6.93 45.56 0.32 10.77 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 46 H 0.05 0.96 7.68 -51.93 -0.40 0.56 16 47 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 48 H 0.12 1.18 8.04 -52.49 -0.42 0.76 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -27.91 375.18 -11.01 -38.92 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.74 Total: 11.30 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.84 Total: -20.26 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.60 Total: -35.10 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.46 Total: -16.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.91 -11.01 -38.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.378 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds